mRNA_Ecto-sp13_S_contig20257.6657.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20257.6657.1
Unique NamemRNA_Ecto-sp13_S_contig20257.6657.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: D8LCU3_ECTSI (Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCU3_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 4.770e-120
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 501
            AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV
Sbjct:   35 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 199          
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: A0A835YPF4_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPF4_9STRA)

HSP 1 Score: 339 bits (869), Expect = 1.190e-115
Identity = 156/165 (94.55%), Postives = 164/165 (99.39%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 501
            A+EIL +ESNVQPV+CPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVV+LLVALKVRF+DRITILRGNHESRQITQVYGFYDECLRKYGNA+VWNCFTELFDYLPMTALVED+IFCLHGGLSPSIDTLDHARALDR+QEVPHEGPMCDLV
Sbjct:   35 AKEILAAESNVQPVKCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVTLLVALKVRFRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWNCFTELFDYLPMTALVEDRIFCLHGGLSPSIDTLDHARALDRLQEVPHEGPMCDLV 199          
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: A0A6U1NEW3_9STRA (Serine/threonine-protein phosphatase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NEW3_9STRA)

HSP 1 Score: 311 bits (798), Expect = 1.010e-106
Identity = 143/161 (88.82%), Postives = 152/161 (94.41%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPM 489
            A+EIL  ESNVQPV CPVT+CGDIHGQ+YD+LELFRIGG CPSTNYLFMGDYVDRGYYSLE VSLLV LKVR+KDRITILRGNHESRQITQVYGFYDECLRKYGNASVW  FT+LFDYLPM+A+VE KIFCLHGGLSPSIDTLDHARALDR+QEVPHEGPM
Sbjct:   33 AKEILAEESNVQPVNCPVTVCGDIHGQYYDMLELFRIGGQCPSTNYLFMGDYVDRGYYSLETVSLLVGLKVRYKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWKYFTDLFDYLPMSAVVEGKIFCLHGGLSPSIDTLDHARALDRVQEVPHEGPM 193          
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: A0A507EBQ0_9FUNG (Serine/threonine-protein phosphatase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EBQ0_9FUNG)

HSP 1 Score: 314 bits (805), Expect = 2.260e-106
Identity = 140/165 (84.85%), Postives = 158/165 (95.76%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 501
            ARE+L  ESNVQPV+CPVT+CGDIHGQF+DL+ELFRIGG+CP TNYLFMGDYVDRGYYS+E VSLLVALK+RF+DR+TILRGNHESRQITQVYGFYDECLRKYGNA+VW  FT+LFDYLP+TAL++D+IFCLHGGLSPSIDTLDH R+LDRIQEVPHEGPMCDL+
Sbjct:   37 AREVLMEESNVQPVKCPVTVCGDIHGQFHDLMELFRIGGNCPDTNYLFMGDYVDRGYYSVETVSLLVALKLRFRDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIDDQIFCLHGGLSPSIDTLDHIRSLDRIQEVPHEGPMCDLL 201          
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: A0A0L0SWW1_ALLM3 (Serine/threonine-protein phosphatase n=2 Tax=Blastocladiales TaxID=4805 RepID=A0A0L0SWW1_ALLM3)

HSP 1 Score: 314 bits (805), Expect = 4.430e-106
Identity = 140/165 (84.85%), Postives = 158/165 (95.76%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 501
            AREIL  E+NVQPV+CPVT+CGDIHGQF+DL+ELFRIGG+CP TNYLFMGDYVDRGYYS+E V+LLVALKVR++DR+TILRGNHESRQITQVYGFYDECLRKYGNASVW  FT+LFDYLP+TAL+E+++FCLHGGLSPSIDTLDH RALDRIQEVPHEGPMCDL+
Sbjct:   34 AREILMEEANVQPVKCPVTVCGDIHGQFHDLMELFRIGGNCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRVTILRGNHESRQITQVYGFYDECLRKYGNASVWKMFTDLFDYLPLTALIEEQVFCLHGGLSPSIDTLDHIRALDRIQEVPHEGPMCDLL 198          
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: M4C2T5_HYAAE (Serine/threonine-protein phosphatase n=30 Tax=Oomycota TaxID=4762 RepID=M4C2T5_HYAAE)

HSP 1 Score: 314 bits (805), Expect = 6.380e-106
Identity = 142/165 (86.06%), Postives = 157/165 (95.15%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 501
            A+EIL  ESNVQPV+CPVT+CGDIHGQFYDLLELFRIGG CP TNYLFMGDYVDRGYYSLE V+LLVALKVR ++RITILRGNHESRQITQVYGFYDECLRKYGNA+VW  FT+LFD+LPMTAL+E+++FC+HGGLSPSIDTLDHARALDR+QEVPHEGPMCDLV
Sbjct:   35 AKEILAGESNVQPVKCPVTVCGDIHGQFYDLLELFRIGGACPDTNYLFMGDYVDRGYYSLESVALLVALKVRHRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDHLPMTALIENRVFCMHGGLSPSIDTLDHARALDRVQEVPHEGPMCDLV 199          
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: A0A075B1U4_ROZAC (Serine/threonine-protein phosphatase n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B1U4_ROZAC)

HSP 1 Score: 313 bits (803), Expect = 8.630e-106
Identity = 140/165 (84.85%), Postives = 157/165 (95.15%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 501
            ARE+L  ESNVQPVRCPVT+CGDIHGQF+DL+ELF+IGG+CP TNYLFMGDYVDRGYYS+E V+LLV +KVRFKDR+TILRGNHESRQITQVYGFYDECLRKYGNA+VW  FT+LFDYLP+TAL+E++IFCLHGGLSPSIDTLDH RALDRIQEVPHEGPMCDL+
Sbjct:   36 AREVLMEESNVQPVRCPVTVCGDIHGQFHDLIELFKIGGNCPDTNYLFMGDYVDRGYYSVETVTLLVVMKVRFKDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIENQIFCLHGGLSPSIDTLDHIRALDRIQEVPHEGPMCDLL 200          
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: T0PTX8_SAPDV (Serine/threonine-protein phosphatase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0PTX8_SAPDV)

HSP 1 Score: 314 bits (804), Expect = 9.680e-106
Identity = 142/165 (86.06%), Postives = 157/165 (95.15%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 501
            A+EIL +ESNVQPVRCPVT+CGDIHGQFYDLLELF IGG CP TNYLFMGDYVDRGYYSLE V+LLVALKVR ++RITILRGNHESRQITQVYGFYDECLRKYGNA+VW  FT+LFD+LPMTAL+E+++FC+HGGLSPSIDTLDHARALDR+QEVPHEGPMCDLV
Sbjct:   37 AKEILSAESNVQPVRCPVTVCGDIHGQFYDLLELFCIGGQCPDTNYLFMGDYVDRGYYSLESVTLLVALKVRHRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDFLPMTALIENRVFCMHGGLSPSIDTLDHARALDRVQEVPHEGPMCDLV 201          
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: A0A0D2WYK4_CAPO3 (Serine/threonine-protein phosphatase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WYK4_CAPO3)

HSP 1 Score: 312 bits (800), Expect = 2.160e-105
Identity = 144/165 (87.27%), Postives = 155/165 (93.94%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 501
            AREIL  ESNVQPVRCPVT+CGD+HGQF+DL+ELFRIGG  P TNYLFMGDYVDRGYYS+E VSLLVALKVR+ DRITILRGNHESRQITQVYGFYDECLRKYGNASVW  FT+LFDYLP+TALVE++IFCLHGGLSPSIDTLDH RALDRIQEVPHEGPMCDL+
Sbjct:   29 AREILMEESNVQPVRCPVTVCGDVHGQFHDLMELFRIGGKAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRITILRGNHESRQITQVYGFYDECLRKYGNASVWKYFTDLFDYLPLTALVENQIFCLHGGLSPSIDTLDHIRALDRIQEVPHEGPMCDLL 193          
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Match: A0A4P9XHL8_9FUNG (Serine/threonine-protein phosphatase n=2 Tax=Zoopagales TaxID=78899 RepID=A0A4P9XHL8_9FUNG)

HSP 1 Score: 311 bits (798), Expect = 8.720e-105
Identity = 139/165 (84.24%), Postives = 157/165 (95.15%), Query Frame = 1
Query:    7 AREILGSESNVQPVRCPVTICGDIHGQFYDLLELFRIGGDCPSTNYLFMGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDECLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARALDRIQEVPHEGPMCDLV 501
            ARE+L +ESNVQPVRCPVT+CGDIHGQ +DL ELFRIGG+CP TNYLFMGDYVDRGYYS+E V+LLVA+KVR++DR+TILRGNHESRQITQVYGFYDECLRKYGNA+VW  FT+LFDYLP+TAL++D+IFCLHGGLSPSIDTLDH RALDRIQEVPHEGPMCDL+
Sbjct:   50 AREVLMAESNVQPVRCPVTVCGDIHGQLHDLQELFRIGGNCPDTNYLFMGDYVDRGYYSVETVTLLVAMKVRYRDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIDDQIFCLHGGLSPSIDTLDHVRALDRIQEVPHEGPMCDLL 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20257.6657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCU3_ECTSI4.770e-120100.00Serine/threonine-protein phosphatase (Fragment) n=... [more]
A0A835YPF4_9STRA1.190e-11594.55Serine/threonine-protein phosphatase n=1 Tax=Tribo... [more]
A0A6U1NEW3_9STRA1.010e-10688.82Serine/threonine-protein phosphatase (Fragment) n=... [more]
A0A507EBQ0_9FUNG2.260e-10684.85Serine/threonine-protein phosphatase n=1 Tax=Chytr... [more]
A0A0L0SWW1_ALLM34.430e-10684.85Serine/threonine-protein phosphatase n=2 Tax=Blast... [more]
M4C2T5_HYAAE6.380e-10686.06Serine/threonine-protein phosphatase n=30 Tax=Oomy... [more]
A0A075B1U4_ROZAC8.630e-10684.85Serine/threonine-protein phosphatase n=1 Tax=Rozel... [more]
T0PTX8_SAPDV9.680e-10686.06Serine/threonine-protein phosphatase n=3 Tax=Sapro... [more]
A0A0D2WYK4_CAPO32.160e-10587.27Serine/threonine-protein phosphatase n=1 Tax=Capsa... [more]
A0A4P9XHL8_9FUNG8.720e-10584.24Serine/threonine-protein phosphatase n=2 Tax=Zoopa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20257contigEcto-sp13_S_contig20257:455..2632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score251.1
Seed ortholog evalue2.5e-64
Seed eggNOG ortholog2880.D8LCU3
Model size503
KEGG koko:K04382
KEGG Pathwayko03015,ko04013,ko04071,ko04111,ko04113,ko04114,ko04136,ko04138,ko04140,ko04151,ko04152,ko04261,ko04350,ko04390,ko04391,ko04530,ko04728,ko04730,ko05142,ko05160,ko05165,map03015,map04013,map04071,map04111,map04113,map04114,map04136,map04138,map04140,map04151,map04152,map04261,map04350,map04390,map04391,map04530,map04728,map04730,map05142,map05160,map05165
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0371@2759
Ec32 ortholog descriptionProtein phosphatase 2A catalytic subunit C
Ec32 orthologEc-07_006920.1
EC3.1.3.16
Cds size351
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03036,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20257.6657.1prot_Ecto-sp13_S_contig20257.6657.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20257 903..2632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.700257-UTR-Ecto-sp13_S_contig20257:454..5551681463017.700257-UTR-Ecto-sp13_S_contig20257:454..555Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20257 455..555 +
1681463017.7159193-UTR-Ecto-sp13_S_contig20257:853..9021681463017.7159193-UTR-Ecto-sp13_S_contig20257:853..902Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20257 854..902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.7255552-CDS-Ecto-sp13_S_contig20257:902..9681681463017.7255552-CDS-Ecto-sp13_S_contig20257:902..968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20257 903..968 +
1681463017.7343092-CDS-Ecto-sp13_S_contig20257:1217..13911681463017.7343092-CDS-Ecto-sp13_S_contig20257:1217..1391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20257 1218..1391 +
1681463017.7431872-CDS-Ecto-sp13_S_contig20257:2143..22211681463017.7431872-CDS-Ecto-sp13_S_contig20257:2143..2221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20257 2144..2221 +
1681463017.7517173-CDS-Ecto-sp13_S_contig20257:2599..26321681463017.7517173-CDS-Ecto-sp13_S_contig20257:2599..2632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20257 2600..2632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20257.6657.1

>prot_Ecto-sp13_S_contig20257.6657.1 ID=prot_Ecto-sp13_S_contig20257.6657.1|Name=mRNA_Ecto-sp13_S_contig20257.6657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MGDYVDRGYYSLEVVSLLVALKVRFKDRITILRGNHESRQITQVYGFYDE
CLRKYGNASVWNCFTELFDYLPMTALVEDKIFCLHGGLSPSIDTLDHARA
LDRIQEVPHEGPMCDLV
back to top

mRNA from alignment at Ecto-sp13_S_contig20257:455..2632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20257.6657.1 ID=mRNA_Ecto-sp13_S_contig20257.6657.1|Name=mRNA_Ecto-sp13_S_contig20257.6657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2178bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20257:455..2632+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTAGGCGAGGGAGATCTTAGGCTCGGAATCAAACGTACAGCCGGTGCG ATGCCCGGTAACAATCTGCGGGGATATTCACGGACAGTTCTATGACTTGC TGTAAGTGGAGCTTTCGGTTTCCGCTCGCGCTCGTGGCGTGGAGGGATTG GAGTTATGTCGTGGCGCTGTTGGGGCGGGCGTTTAGCGTGCGTCAAAGTG CTCGTGTGTGTTTCGCGGCGACGGCTGCGGCGGCGGCTGCTAGACCTAGC TCTCTCTGTTTTTCGCATTCGTGTCCTCCGGATTTGATTCGTTACTGCTG TTGTTCACGTTGCTTGTTTGTGTTGTGTGTTAGTCAGCGTCGACCAGAGG AGAAGTCAGTCTCATCGTGTGTGCATTATTTTCTGGTTTAATTTGGCAGG GAGCTTTTTCGGATCGGGGGAGACTGCCCTTCGACGAACTACCTCTTCAT GGGTGACTACGTGGACAGGGGTTACTACTCGCTAGAGGTCGTCAGTCTTC TGGTTGCCCTCAAGGTGCGTTAATTGTGTATGTAACAAGATGGCGAGTCG AAAACTACGATGATTTGATTACGTCCTGGCCCCCAAGTCACTCGATTGGC TCCGTCCGTCCCCTCCAAACTAGGTCCGGTTCAACGACAGCACTTCCACG CTGTCGTGTATGTCTGCGTTGCGTGGAGATCAAACGTTGCCCCCCAAACC ATCTACGATGATTTACCAATCACCATGCTGGCAACAAATCGCTTGATCGG CCCTCCAACGTAGGTCCGGTTCAAGGATCGCATCACTATCCTGCGGGGCA ACCACGAGTCCCGCCAGATCACGCAGGTCTACGGGTTCTACGACGAATGC CTCCGCAAGTACGGCAACGCCTCGGTGTGGAATTGCTTCACCGAGCTCTT CGACTACTTGCCCATGACAGCCCTGGTCGAAGACAAGGTGAGGTGTTCCC TCCCCGGTGGCGGGCCACGGATGAGAGAGGTGTGGGGTAATGAGCCCCCA TTAGGGTGCACACCGTATACGACACAAGACAACACACTCCCTGGACCGAT TTTCAAAGCTCGATCACGCCACGACCAAGAGGTTGCATGAAATAGTCGAT ACAGTTTCGGAAAGCTCTCGACGGCACGGCTTCGACGTCACCATTTTCAG CGCTGTGACTCTCTCTGCTGTTGAGAAATCAAGCTTCGAAAATCAGTCCG GGGGTGTGTCATCTTGTGTCGCATCAGAGCGACTTTCAGCCAATGTCAGG TTTTTGGGTGGTCAGAAAGGTCTCGGTTATGATGTGTTGTTGCTTGTAGG CCTCCTTATTTCTGGCGCTCCATCATCGTTTTGCATTTCCTTCTCTAAAT AGACACCGCTTCCTCAGCTTGCAGCTTACGTATTGTAAGCACTCGAGGTA AGACCGGTCTCCCCACCCACCCGTACTTATGCCTGATAATACAGTCGGAG CCCCTGATTTTCATTGATTCTTTAGGTAGTGGTGTTTCAGAACTAGTTTT TGTATACGGTGAAATGGCGTCATACGGATGAAACGTTGAAGATGTTGTCG CTGGGTTTTCGACTTAACATGGCCGCCTAATCGCTGTGTCACTATGCGGC CTGGTACTGGGTGCGGCGACCATGTTGCCATGTATGCCCCTGGTTGTTGA CGGTGTTGTTTTTCATGGCTGTTGTTGATGTTCTCGCAGATCTTCTGTCT CCACGGAGGCCTCTCGCCATCCATCGACACGCTGGACCACGCCCGGGCCT TGGACAGGATACAGGAGGTGCGTTGCGGGTGTAATGGTGGATGCTCGACA GCGGCATCGATGCGCAATCCTAGTGTGCGAGGGTATACAACTCCTTGATT GGTGTAGCGATATGTAGCAGGCGATGGCGGTGAGCATGGAGGGTGATGCT TCCATTACATGAATTGACGTAACCCCCCAACCAACCAACCACCCCTGACT TGCTGCTTGTAGTTGCCTGGTTCACCCCCCCTCCCCCCTCCCTCCGATAT GCATGAGTGGACGTAATCCAGAACCACCCACCCGCCCTGACTTCCTGCGT GTAGGTGCCCCTACGACACTATGTGTGAACTGATTCACCCCACCTCTTCC CCCCTCATTCCGCATTGCATGATTTGACGTTACCCCTGCGTGCAGGTGCC CCACGAGGGCCCTATGTGCGACCTTGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20257:455..2632+

>mRNA_Ecto-sp13_S_contig20257.6657.1 ID=mRNA_Ecto-sp13_S_contig20257.6657.1|Name=mRNA_Ecto-sp13_S_contig20257.6657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20257:455..2632+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGACTACGTGGACAGGGGTTACTACTCGCTAGAGGTCGTCAGTCT
TCTGGTTGCCCTCAAGGTCCGGTTCAAGGATCGCATCACTATCCTGCGGG
GCAACCACGAGTCCCGCCAGATCACGCAGGTCTACGGGTTCTACGACGAA
TGCCTCCGCAAGTACGGCAACGCCTCGGTGTGGAATTGCTTCACCGAGCT
CTTCGACTACTTGCCCATGACAGCCCTGGTCGAAGACAAGATCTTCTGTC
TCCACGGAGGCCTCTCGCCATCCATCGACACGCTGGACCACGCCCGGGCC
TTGGACAGGATACAGGAGGTGCCCCACGAGGGCCCTATGTGCGACCTTGT
T
back to top