mRNA_Ecto-sp13_S_contig2025.6655.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2025.6655.1
Unique NamemRNA_Ecto-sp13_S_contig2025.6655.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2025.6655.1 vs. uniprot
Match: D7FKL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.680e-19
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 MHELLIRFNGLKVPSCSTIHRGAPRTVVRRVHGYATRILRVP 126
            MHEL IRF+ LKVPSCST+HRGAPRTVVRRVH YATRILRVP
Sbjct:    1 MHELHIRFDALKVPSCSTVHRGAPRTVVRRVHAYATRILRVP 42
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BLAST of mRNA_Ecto-sp13_S_contig2025.6655.1 vs. uniprot
Match: A0A6H5KI77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI77_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.140e-12
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 2 
Query:   35 RYPAARRFIEEHHGLSFAEFMGTRRASCAYP 127
            RYPAARRFIEEHHGLSFAEF+GTRRASCAYP
Sbjct:  831 RYPAARRFIEEHHGLSFAEFIGTRRASCAYP 861
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BLAST of mRNA_Ecto-sp13_S_contig2025.6655.1 vs. uniprot
Match: A0A6H5L0V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:   38 YPAARRFIEEHHGLSFAEFMGTRRASCAYP 127
            YPAAR FIE+HHG++F +FM TRR SC +P
Sbjct:  784 YPAARTFIEQHHGMAFVDFMSTRRGSCLHP 813
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BLAST of mRNA_Ecto-sp13_S_contig2025.6655.1 vs. uniprot
Match: D7FKL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL9_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 5.210e-6
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:   38 YPAARRFIEEHHGLSFAEFMGTRRASCAYP 127
            YPAAR FIE+HHG+ F +FM +RR SC +P
Sbjct:  883 YPAAREFIEQHHGMPFVDFMASRRGSCMHP 912
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BLAST of mRNA_Ecto-sp13_S_contig2025.6655.1 vs. uniprot
Match: D7FRS3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRS3_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 9.750e-6
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:   38 YPAARRFIEEHHGLSFAEFMGTRRASCAYP 127
            YPAAR FIE+ HG+SF +F+ TRR SC +P
Sbjct:  796 YPAAREFIEQRHGMSFVDFLATRRGSCMHP 825
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2025.6655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKL8_ECTSI3.680e-1988.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI77_9PHAE2.140e-1296.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0V3_9PHAE1.090e-666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL9_ECTSI5.210e-663.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS3_ECTSI9.750e-663.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2025contigEcto-sp13_S_contig2025:12776..13037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000690.1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.5515158-CDS-Ecto-sp13_S_contig2025:12775..128681681463017.5515158-CDS-Ecto-sp13_S_contig2025:12775..12868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 12776..12868 -
1681463017.5604675-CDS-Ecto-sp13_S_contig2025:13001..130371681463017.5604675-CDS-Ecto-sp13_S_contig2025:13001..13037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 13002..13037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2025.6655.1prot_Ecto-sp13_S_contig2025.6655.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2025 12776..13037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2025.6655.1

>prot_Ecto-sp13_S_contig2025.6655.1 ID=prot_Ecto-sp13_S_contig2025.6655.1|Name=mRNA_Ecto-sp13_S_contig2025.6655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MHELLIRFNGLKVPSCSTIHRGAPRTVVRRVHGYATRILRVP*
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mRNA from alignment at Ecto-sp13_S_contig2025:12776..13037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2025.6655.1 ID=mRNA_Ecto-sp13_S_contig2025.6655.1|Name=mRNA_Ecto-sp13_S_contig2025.6655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=262bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2025:12776..13037- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGAGCTGCTCATTCGCTTTAATGGTCTGAAGGTGAGAGAACCAGC
ACCTGGTTGGGAAAAAAGGTGTGCTTCCGAGAAGCTCCGACGCAGGTTCG
TTGCAATCTGTTCGATTTTACGCACGCGACTTGACAAACCACGCGCGGCT
TGGAACCCATGACCCTCAGGTACCCAGCTGCTCGACGATTCATCGAGGAG
CACCACGGACTGTCGTTCGCCGAGTTCATGGGTACGCGACGCGCATCTTG
CGCGTACCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2025:12776..13037-

>mRNA_Ecto-sp13_S_contig2025.6655.1 ID=mRNA_Ecto-sp13_S_contig2025.6655.1|Name=mRNA_Ecto-sp13_S_contig2025.6655.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2025:12776..13037- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGAGCTGCTCATTCGCTTTAATGGTCTGAAGGTACCCAGCTGCTC
GACGATTCATCGAGGAGCACCACGGACTGTCGTTCGCCGAGTTCATGGGT
ACGCGACGCGCATCTTGCGCGTACCCTAA
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