mRNA_Ecto-sp13_S_contig2025.6654.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2025.6654.1
Unique NamemRNA_Ecto-sp13_S_contig2025.6654.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: D7FKL7_ECTSI (HU-CCDC81_euk_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL7_ECTSI)

HSP 1 Score: 731 bits (1887), Expect = 5.850e-261
Identity = 413/566 (72.97%), Postives = 425/566 (75.09%), Query Frame = 1
Query:   88 MRLRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFDCAALCRNGSTTTRTDTSSSCGGEHEEREEWDGVSTGRSRSSSGLPPRPPAGSGLGARHGSDDGXXXXXXXHLTNAEPPPGTPCPGASERGGWNQAPTDDDGAGGRSCPGGCVLGKKFDEEVERQRAQEVAAERGRKRGSGKRCRTREKASRSPTRLVWESAFRDHVTALEGLAEDDVNLANRTRLLQLAEDRRKSEERENKQREMHDLLTFVQGQIHAEIEDRRALEVESKRNGEKPLTFSARRDRASTLTEKYRGTAWRAPDWGPRRARATNITRDELLGCLQRQIREREEERVRGNRRRLVEEKAAIEKLDRDYDAKEAWKKAEREVAQMELKRSWEVHGQIKRMRALAKAGPTALRNYALSQNIIDQDGKNNDSPEGRARTGWTEPGPRAITGPSKLYMKGVCRYRPWVDVSEEGRRVNGNDCRGGGSGNYRPEAEDRDSSRPSTALLETPSSVGFDSRLSARHVN 1785
            MRLRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFDCAALCRNGSTTTRTDTSSSCGGE  EREEWDG+STGRSRSSSGL PR PAGSGLGAR+ SDDG XXXXXX   NAEPPPGTPC G SER GWNQ PT         CPG  VLGK+FDEEVERQRAQEVAAERGRKRGSGKRC+TREK        VWESAFRDHVTALEGLAEDD+                                          IEDRRALEVESKRNG+KPLTFSARRDRAST+ EKYRGTAWRAPDWGPRRARA+N+TRDELLGCLQ                           LDRDYDAKEA KKAEREVAQMELKRSWE                       LSQ+IIDQDGKN D+PEGRARTGWTE GPRAITGPSKLYMKGVCRYRPWVD  E GRRVNGND RGGG GN RPEAED D  RPST L E PSSVGFDSRLSAR V+
Sbjct:    1 MRLRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFDCAALCRNGSTTTRTDTSSSCGGERGEREEWDGLSTGRSRSSSGLSPRRPAGSGLGARNCSDDGHXXXXXXXXRNAEPPPGTPCTGISERDGWNQPPTXXXXXXXGRCPGEGVLGKEFDEEVERQRAQEVAAERGRKRGSGKRCKTREK--------VWESAFRDHVTALEGLAEDDM------------------------------------------IEDRRALEVESKRNGDKPLTFSARRDRASTVNEKYRGTAWRAPDWGPRRARASNLTRDELLGCLQ---------------------------LDRDYDAKEARKKAEREVAQMELKRSWE-----------------------LSQSIIDQDGKN-DAPEGRARTGWTEAGPRAITGPSKLYMKGVCRYRPWVDAGERGRRVNGNDSRGGGGGNDRPEAEDGDCRRPSTTLSEAPSSVGFDSRLSARRVH 465          
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: F0YCP0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCP0_AURAN)

HSP 1 Score: 87.4 bits (215), Expect = 2.470e-14
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 LEILVHRGTVDVPNFMRVGWQ---RFQTLDGEMRL-----------RPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFDCAAL 390
            L+ ++ R    VPNF +  WQ    F   D + RL           RPVF+  E FCR+H LP +R     L +     ++YS LA+RY++ +TKDMV+ ALR+V R +G+ ++SG  + V  S G+L  +  K +F FD A+L
Sbjct:   43 LDRVIQRRGAAVPNFGKFTWQVLGGFTPADLDPRLAGKKAASKIPLRPVFMFAENFCRSHGLPWRRQNEADLVK--CGDLDYSNLALRYSSHLTKDMVFAALRDVTRRVGEKIASGFALRVKMSVGSLVCEHGKCRFEFDAASL 184          
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: A0A8J2SU03_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SU03_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.430e-12
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    4 EILVHRGTVDVPNFMRVGWQ---RFQTLDGEMR------LRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFDCAALCR 396
            ++L  RG   +P F R  WQ    ++  D + R      LRPVF  +E FC+AH LP + I    L   A   +NYS LA+R+T+ +TKDMV+ ALR++ R IGD ++SG  +++ F  G L     K +F FD + L R
Sbjct:   56 KLLAKRGA-SIPGFGRFTWQVLGDYKPSDLQDRPDELIPLRPVFQFSEDFCKAHLLPWRPIAEDKLVECAD--LNYSILALRHTSRLTKDMVWSALRDLQRKIGDRIASGYSLTLDFGVGQLVSDRGKPRFLFDASKLRR 192          
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: A0A7S3LXY3_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LXY3_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 1.790e-12
Identity = 43/116 (37.07%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   34 VPNFMRVGWQRFQTLDGEMRL-RPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFD 378
            +P F R  W R ++  G+ +L RP+FIL+E F ++H+L +K+           E +NY+KLAIR+T+ ++KD VY A+R++ + +G  ++ G  V V F  G L  K+++  F FD
Sbjct:   85 MPQFARFAW-RVESEKGDSKLLRPIFILSESFGKSHNLRYKKGTPKLPGLVGCEDINYAKLAIRFTSTLSKDNVYTAMRDLVQKLGSTIADGRDVRVDFRVGRLVAKDKRVDFLFD 199          
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: A0A5D6XS35_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS35_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.940e-12
Identity = 38/123 (30.89%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   28 VDVPNFMRVGWQRFQTLDGEMRLRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFDCAALCR 396
            V +  F  + W+       + +LRPVF+L++ F R + L H++   P     A E +N++K+AI+++  +TKD+V+  +R++ + +G+   +G Q+S+ FS G L  K R     FD   + R
Sbjct:  180 VHIATFASISWETCTNSRNQPKLRPVFVLSDTFARTYGLQHRKPPSPGGLG-ALEEINFTKIAIKFSRTLTKDLVFSGVRDLLQRLGELAGAGAQLSIAFSVGRLVAKNRVVSMVFDPVQIPR 301          
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: W2I8D9_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2I8D9_PHYPR)

HSP 1 Score: 79.3 bits (194), Expect = 6.760e-12
Identity = 39/117 (33.33%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   28 VDVPNFMRVGWQRFQTLDGEMRLRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFD 378
            V +  F  + W+ F     + +LRP+F L++ F + + L  KR   P     + E +N++K+AI+++  +TKD+V+ A+R++ + IG   S+G  +S+ FSFG L  K R     FD
Sbjct:   52 VHIATFATITWETFTNSRNQPKLRPIFFLSDTFTKTYVLSQKRPPLPSANLASLEDINFTKIAIKFSRNLTKDLVFCAIRDLVQKIGMVASTGVPMSIEFSFGRLIAKNRCISMLFD 168          
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: A0A3F2RWM9_9STRA (HU-CCDC81_euk_2 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWM9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.100e-12
Identity = 39/117 (33.33%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   28 VDVPNFMRVGWQRFQTLDGEMRLRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFD 378
            V V  F  + W+ F     + +LRP F L++ F + + L  KR   P       E +N++K+AI+++  +TKD+V+  +R++ + IG   S+G  VS+ F+FG L  K R     FD
Sbjct:  135 VHVATFATITWETFTDSRNQPKLRPTFFLSDTFIKTYGLSQKRPPLPSATLAPLEDINFTKIAIKFSHSLTKDLVFSGVRDMVQKIGYVASTGAPVSITFNFGRLIAKNRCISVLFD 251          
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: A0A225UVB3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UVB3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.480e-12
Identity = 38/117 (32.48%), Postives = 66/117 (56.41%), Query Frame = 1
Query:   28 VDVPNFMRVGWQRFQTLDGEMRLRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFD 378
            V +  F  + W+ F     + +LRP F L++ F + ++L  KR   P     A E +N++K+AI+++  +TKD+V+ A+R++ + IG   S+G  +S+  +FG L  K R     FD
Sbjct:   52 VHIATFATITWETFTNSRNQPKLRPTFFLSDTFIKTYNLSQKRPPLPTANLAALEDINFTKIAIKFSRNLTKDLVFCAIRDMVQKIGMVASTGAPMSITLNFGRLIAKNRCVSVLFD 168          
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: A0A8K1FKM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKM3_PYTOL)

HSP 1 Score: 79.0 bits (193), Expect = 8.670e-12
Identity = 35/117 (29.91%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   28 VDVPNFMRVGWQRFQTLDGEMRLRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFD 378
            V +  F  + W+       + +LRP+F+L++ F +++ L  K+ L PP    + E +N++K+AI+++  +TKD+V+  +R++ + IG+   +G  +S+ F+ G L  K R     FD
Sbjct:   52 VHIATFATISWETCTNSRNQPKLRPLFLLSDTFIKSYGLQQKKPLTPPCLA-SLEDINFTKIAIKFSKNLTKDLVFSGIRDLLQKIGEVAGAGTPMSITFNIGRLIAKNRCISLVFD 167          
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Match: A0A2P4XRT6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.050e-11
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   16 HRGTVDVPNFMRVGWQRFQTLDGEMRLRPVFILNEGFCRAHDLPHKRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMSSGGQVSVVFSFGTLEVKERKFQFTFD 378
            H   V +  F  + W+ F     + +LRP F L++ F + + L  KR   P     + E +N++K+AI+++  +TKD+V+ A+R++ + IG   S+G  +S+ F+FG L  K R     FD
Sbjct:   48 HGKGVHIATFATITWETFTNSRNQPKLRPTFFLSDTFVKTYGLSQKRPPLPSANLASLEDINFTKIAIKFSHNLTKDLVFCAIRDMVQKIGMVASTGVAMSIEFNFGRLIAKNRCISVLFD 168          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2025.6654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FKL7_ECTSI5.850e-26172.97HU-CCDC81_euk_2 domain-containing protein n=1 Tax=... [more]
F0YCP0_AURAN2.470e-1437.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SU03_9STRA1.430e-1239.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3LXY3_9EUKA1.790e-1237.07Hypothetical protein n=4 Tax=Palpitomonas bilix Ta... [more]
A0A5D6XS35_9STRA2.940e-1230.89Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W2I8D9_PHYPR6.760e-1233.33Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A3F2RWM9_9STRA8.100e-1233.33HU-CCDC81_euk_2 domain-containing protein n=3 Tax=... [more]
A0A225UVB3_9STRA8.480e-1232.48Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A8K1FKM3_PYTOL8.670e-1229.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4XRT6_9STRA2.050e-1132.23Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2025contigEcto-sp13_S_contig2025:1..8877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score745.0
Seed ortholog evalue2.8e-212
Seed eggNOG ortholog2880.D7FKL7
Model size1788
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.Domain of unknown function (DUF4496)
EggNOG OGs2C7PM@1,2RCZ3@2759
Cds size1788
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2025.6654.1prot_Ecto-sp13_S_contig2025.6654.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2025 1..8877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.4103196-CDS-Ecto-sp13_S_contig2025:0..871681463017.4103196-CDS-Ecto-sp13_S_contig2025:0..87Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 1..87 +
1681463017.4202464-CDS-Ecto-sp13_S_contig2025:1539..17341681463017.4202464-CDS-Ecto-sp13_S_contig2025:1539..1734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 1540..1734 +
1681463017.4324856-CDS-Ecto-sp13_S_contig2025:2109..23151681463017.4324856-CDS-Ecto-sp13_S_contig2025:2109..2315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 2110..2315 +
1681463017.4440048-CDS-Ecto-sp13_S_contig2025:2764..31221681463017.4440048-CDS-Ecto-sp13_S_contig2025:2764..3122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 2765..3122 +
1681463017.45587-CDS-Ecto-sp13_S_contig2025:3316..33791681463017.45587-CDS-Ecto-sp13_S_contig2025:3316..3379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 3317..3379 +
1681463017.4657695-CDS-Ecto-sp13_S_contig2025:3860..39811681463017.4657695-CDS-Ecto-sp13_S_contig2025:3860..3981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 3861..3981 +
1681463017.4788654-CDS-Ecto-sp13_S_contig2025:4976..50621681463017.4788654-CDS-Ecto-sp13_S_contig2025:4976..5062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 4977..5062 +
1681463017.4885645-CDS-Ecto-sp13_S_contig2025:6067..61811681463017.4885645-CDS-Ecto-sp13_S_contig2025:6067..6181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 6068..6181 +
1681463017.5004175-CDS-Ecto-sp13_S_contig2025:6837..69181681463017.5004175-CDS-Ecto-sp13_S_contig2025:6837..6918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 6838..6918 +
1681463017.509399-CDS-Ecto-sp13_S_contig2025:7173..73261681463017.509399-CDS-Ecto-sp13_S_contig2025:7173..7326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 7174..7326 +
1681463017.5180619-CDS-Ecto-sp13_S_contig2025:8039..82841681463017.5180619-CDS-Ecto-sp13_S_contig2025:8039..8284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 8040..8284 +
1681463017.5265992-CDS-Ecto-sp13_S_contig2025:8798..88771681463017.5265992-CDS-Ecto-sp13_S_contig2025:8798..8877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2025 8799..8877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2025.6654.1

>prot_Ecto-sp13_S_contig2025.6654.1 ID=prot_Ecto-sp13_S_contig2025.6654.1|Name=mRNA_Ecto-sp13_S_contig2025.6654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=596bp
LEILVHRGTVDVPNFMRVGWQRFQTLDGEMRLRPVFILNEGFCRAHDLPH
KRILRPPLFRKAAEAVNYSKLAIRYTTFMTKDMVYGALREVFRGIGDAMS
SGGQVSVVFSFGTLEVKERKFQFTFDCAALCRNGSTTTRTDTSSSCGGEH
EEREEWDGVSTGRSRSSSGLPPRPPAGSGLGARHGSDDGHHHHDDDHLTN
AEPPPGTPCPGASERGGWNQAPTDDDGAGGRSCPGGCVLGKKFDEEVERQ
RAQEVAAERGRKRGSGKRCRTREKASRSPTRLVWESAFRDHVTALEGLAE
DDVNLANRTRLLQLAEDRRKSEERENKQREMHDLLTFVQGQIHAEIEDRR
ALEVESKRNGEKPLTFSARRDRASTLTEKYRGTAWRAPDWGPRRARATNI
TRDELLGCLQRQIREREEERVRGNRRRLVEEKAAIEKLDRDYDAKEAWKK
AEREVAQMELKRSWEVHGQIKRMRALAKAGPTALRNYALSQNIIDQDGKN
NDSPEGRARTGWTEPGPRAITGPSKLYMKGVCRYRPWVDVSEEGRRVNGN
DCRGGGSGNYRPEAEDRDSSRPSTALLETPSSVGFDSRLSARHVN*
back to top

mRNA from alignment at Ecto-sp13_S_contig2025:1..8877+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2025.6654.1 ID=mRNA_Ecto-sp13_S_contig2025.6654.1|Name=mRNA_Ecto-sp13_S_contig2025.6654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8877bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2025:1..8877+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGAAATACTTGTCCATAGGGGAACCGTGGACGTCCCAAACTTCATGCG GGTCGGATGGCAGCGTTTTCAAACCTTGGATGGGGAAGTGAGTTGGGACT GAAGCACGGGAGGCTGAGGGATGAAGTGCTGTGGAGGCTGGGGGAAGAGC AAGACTTCAAGTGACGCATACAAAAAATAGGAACATGCGCACCACTGCTT GCTGAATACTTCATGTAGACAGAACCGCAGAAAACGACAGCAGTAGACTA TCGTACGGCGGTAATTACGATAAGACTAAACCCTCTACATACTGCAGCAG TAGTCTACATTTAAATTTGATGGGTTCACAACGCAACCCGGAGCTTCATA CCTCAAGCAAATCTCGTTCGGTCCTGTAAAACATGATTAAAAACATGCAA TGACAGCACTGCTGTGGGACGATGTGCAGTTGTACAGTAGTCTACTCTAG TGTAGACCTTAGGGATCGGGCTGCTGTATCCCCCGATAGGCCTAGTGGCT AGAGTGACAAGAGGGTGAAGGAATGCCGTATGCACGAGTGACGAATGCGA GGGAAGCACAGCAAGTGATGGGACATGCCAGCCCCGAAGGGGGCACATTG GTTGCATGGCAGTAAATTCTAGACGTGGCAGTCTTTACTGCCGCGGATAA TCGGCGCCAAGTATTGTGAGCGTCATCATCCTGCAGGACTTGGACTTTTT CGGCCACGACAAGAGGAATACCGCGCCGTTACTCTCCCGAAGCCCCTCTT CCTTGCAATATCCCTGATGGCAATAGTAGCGAGTGCAATACGCATGCCTC ATTGTCCTGCCACAAAGCTCGGGGGCACAGGTAGTACTCTTCGGAAGGAT TGCTTTGAAGCTATTGCGAGCATTTTCGGCGTGGTGAAGGGACTGTGAGT TCAACGACTACGAGATACCAGGTCCCAAAAGCACCCATTAACATCGTGGA AACTTAGACACGTACCTGCACAGTTGGCGGTGCACAGTTGGTGCTTTGAC AGGTTTTCCTTATCAGGGATATTTGCCGCTTGAGGACAGACGTCGACTTG TGTATCTTGTTCACTGGAAACCCATAGATCTACATCCGTCGACGTGCTCT TGTCTTTCGCACCGGAGATGAGGGTATTGCTTCGATTCAGGGATCTCACC TTTGTGCATCCTTACTCCTGTAAGTTCTACACGCATCGCGTGAGGAGGCG TTTGTTGCGTCCTGTCAGACGCACTCCAGCGGGAAGTGTTGACGCCGCCG TGTCCACAGCAAAGAATATGTCCGGACAACTATTGTCTCGTAGTTCGCCA ACAGCGTGTGATCAATAATACCAGCCACGAGAGAACCCTCGTATGATCTG GTACACAGGCACAGAACGAGACATTTCCGACCTCAACAGACCAAGAACCC AAGAAGATTTCTGACAGATTCCGGAACCGATGGTAAATCGGACAACTAAA TCAGAATCGAGGTAAAACGAAGTAAGATTCGAAGAGTATACGCCACAAAC ATGCCCGAAACTAACCTTTGAGCCACTCGCTTTGCTCAGATGCGACTCCG GCCGGTTTTCATCCTCAACGAGGGATTTTGCCGCGCGCACGACCTCCCGC ACAAGCGGATTCTTCGCCCCCCGCTGTTTAGAAAGGCGGCGGAAGCGGTG AACTACTCCAAGCTTGCCATCCGCTACACGACTTTTATGACCAAAGACAT GGTCTACGGCGCTCTACGAGAAGTCTTTCGAGGGGTGAGCAAATCGCTGT GTTTCTGTTTCCCGATGCAATGATGTAGACACAGCTGGGATTACGATACG CCAAGGCTCATGGTACCCAGCGGAAAAACAGAACAGTAGGAGGAAGGCTA AAGATCTCCCACTTGCCCCCAAACCAGGGGAATTACAAAAAACTGATGGA AACAGAGTCGTAACCCCCGCCGTTGGATGTATATGAACAGCAGTAAGCAT TCCTTCTGCATCCCTGGCGGAGACTTGTAGTATCCCCTTCTTCCCTAGGC ACTACGAGCCCCCCTCGACTTGCTTATTGGCATTTCAACGTTCGAGAAGG TAATTTTCTCGCGCAAATGACTATAAACTGCTACCGAACCCGCGTCGATT CTATTTTAGATAGGGGATGCGATGTCATCGGGAGGTCAAGTAAGCGTGGT GTTTTCCTTCGGCACTCTCGAGGTCAAGGAAAGAAAGTTCCAGTTCACGT TCGACTGCGCGGCCCTCTGTCGGAACGGGAGCACCACCACGCGTACGGAC ACCTCGAGCAGCTGCGGTGGAGAGCACGAGGAGCGGGAGGAGTGGGACGG GGTTTCTACCGGCAGGTGAAGTAGCAGAGAGTAACATTTTCGCAGTTTTC CGCTTGGAATTCAAAGCGTTGGTAGACTATCGCGACGGTTGTGCGCACTT CCACAGGCGGCTCGTGTGAGCTGCACGGCCTCAATAGCCGCCGCAGAGAA GTATTTTATTTGTTGTTCCCTTGAGGGAGTCGGGTAGAGATCATTGTCAA TACCATCGAGGTTTCTTCTGAGACCAGGGGTGGCGAGGCTTGTCTCACCC GCGGCTTACATCTTGTTATCGAAACATCCCCCCTTGACCAGAGGCCACGC CAGTGTCGAGCTAGCGCGGTGCCCCGCACCACGCCTCGGACGAACCGTCT GTCTCTGTGCCGTCGAATCCAAGCCACAGATTTCGTGGTTTCATCCTCGC CGCATCCAACAACAAGCACCTTCAAGCTGGATTTCCCTCCGCCCCCATGG ACACCCCCGCTCAGATCCAGATCATCCTCGGGGCTACCGCCGCGACCTCC TGCTGGGAGCGGGTTGGGAGCCCGCCATGGCAGTGACGACGGCCATCACC ATCATGACGACGATCATCTCACGAATGCCGAACCACCGCCTGGTACACCT TGCCCGGGTGCCTCGGAGCGGGGTGGTTGGAACCAGGCGCCAACCGACGA TGATGGAGCAGGAGGCCGCAGCTGCCCTGGGGGGTGTGTGCTCGGCAAGA AGTTCGATGAGGAGGTTGAGAGGCAGAGAGCCCAGGAGGTTGCGGCGGAG AGGGGAAGGAAGCGTGGGTCCGGCAAGCGGTGCAGGACACGCGAAAAGGC GAGTCGAAGTCCCACGCGTCTGGTGCATTCCGCGACGGCGGTAGAGAGAA AATCATCTCCTAGCTAGGAATTTCCCATGCTATTAACTGTGATCCCTGGT ACTGTTATGGAGGCCGCGTTCGAAGCACCACTAGAACATCTCGCAACCCG TTGATAACATCCTAGATGCCTGGTACCGCACGGCCTCGCGTTTCGCGTCC CGGTGACGGGCTGCAGGTTTGGGAATCCGCTTTCCGAGACCATGTGACTG CACTGGAGGGTCTAGCCGAGGATGACGTGGTAAGACACCCGGGCGGTCTC AAATCAGGGGCGGGGGGGGAGGGGAGGGCACTCACGAGTGCGCGGTTGTG CTTCCCTCCAAAGATAGAACAAAGTGTACGTGCATCAAGAAATTAAACGT GTGCGTGTCTTCGCTTTGTTTCCATGATGTTTTCTCTCAAGTCGATCGTT TGCTGGGGTATCAATCCCAAATCGATCTCGCCGCCGTGGATTGCCTGGAT GAAGCCATCGTGGCCCTTCGTGGCCCATCATTCGTCAAATCGTGCTCAAT GACAATGTACGTAGCGTCCAGAAGCACTACCCTCTCGGTCGTATTGGGCG ATGGCAACTGTCGAAGAACTGCCACCGCAAGAGGTGTCCGGCTCTCAATA CGACGTCGATCTCCCGGAACACTGACCAGAAAAATAATTGGATCATGTGC AGTCGCATACCTGCGCCTTGCTGTGAAAATCCTGTCATGGGTGGACACCG CCACCACCAGAATCTTGCCAACAGGACAAGACTCTTGCAGCTAGCGGAGG ACAGGAGGAAGTCGGAGGAGCGCGAGAACAAACAGCGCGAGATGCACGAC TTGCTCACCTTTGTGCAGGGACAAATTCATGGTAAATAGCAAAACGCAGG ACCTCAAAGTTGTCGATCAGGGAGTCCGGGAGACGAGTCCTTCATCTGCT CGGCAGGAAACACACAGCCTTTTCTGCGCTTTTCTTTACGCGGAAGTGCA GTCGAGTTGCAGACATCCAACTCCCCGAGTCACAAAAGATTGCTACGAAA TTCTCCTTCCAGTTTGCTTCATACACACGACGATCTGGCAAGTGGCGGTA CTCCTTAGGTCTCTCTTAACAAGTGCCTTGTCTAGAGTAAAATATTATGG TACTTTTTAGGTTGCCTTGAGACGACGAGAGTAAACCTCGTGCATCTCCC ATTAAAACAGCTAGCAGAACGTGGTTTTCTTCGAGAAGGTCACAGCAGCA ACAACCACCGGACCCACAGTATCAACGGCAACAGCAGAAAAGCACCAACA TCAACCGGAGTTAGGAAATGCCTTCCAAACAAGGCCAACATCGAAGCGCC CAGTGCTTGACACAGAAGTCTGATAATCGCCTACGGGACACAAACACACG AAAGCCTTGAATTACAGTATAGGGTGTGTAATTGTTATCCCATTTAGTTC TGGAGGTCGGTCCTTACTCGCTTCGGTACAATTCTGGACGCACCAACCGG GGCAATACAGGAGGAAGGCCACACAGTAGTTGTATTCTCCGCCTTCCTCC TGGCGATGCGTACCTTGTTTTTTTCGCGTGAAGAATCCCGCGGTTTTTTT CCCTCATAGACTGTGAAGCAGAATTTTGGCGTGCACACAAGGTTTTTGCT TTCCCCGTTGCTTGGGTATGTTGCCATGGAAACTCTCCGTTCGTGGTAGT GCACAGAGATTCGAACCCACGTCCACACGTCAGAAGGCCACGAGCAGGTT ACCTATGAACCACGTAGCCATTGTAAGTGTGACCTATGTACCGTGTTTAT TTCGCTCTGCCTCTCGTGATGTTGTTTCAACTCCTTTACGTGGCCCACGG CGTCGCTGCCACGTGCTCTCTGTGAGCAGAGATCGAAGACCGGCGTGCGC TAGAGGTGGAAAGCAAGAGGAACGGAGAAAAGCCGCTAACATTCAGCGCT CGCAGAGATCGGGTGCGTTCTCGATTGGAGCGCGTTTTCCTTCACCATCA TGTGGAAGTGTTACACTGAAACCCTTCTCCATGACCATGACTTTCTGAAT TGAACACAACGAACCCTGTCGGATGAGATGAAGAATACTCAATCCGAAAC GGGGGGTAAACTGCAGCAATTGTGGTATTTCCGAAGCGGGGTCTGGGCAC TTGTCGGTGAGTGTATCATGGCGTATCCTTCCAACTAGGCTGCCCCACTC GGAAAGGCAGAGAGATGTCGAAAGAGGACCGTCCTCCAAGTAAGGCGCCA TCTCTCACACGAAAGGAAGAGCACGCTTCCCCACAAGACGAAACAGGAGA TACTCTATCTTCTTTTTCATGACGACCTTTCGTAGGAGGAACGCACAATG CGAAGACCTTGGACATTTGGGTGGTGCTTTGCAATGGAACTGTCGTTATT CGGCGAAAATAAGACCAGGAACGCGACGATTAGTTTTACTCGTTCACTAA ACACTTGGAAGTGATTTGCGGAATACCCTCCATTTTCACTCCGAGACGTG GTGGCATGTTCATGAGAAAAGTGCAGCAACGGGTGCCGAGACATGCGCTC TTGGCCCCAAACTACCTCAATCAGTACCAACCGCTGGAAGCCTTCGGTGG CAATATCCCCCGACAACAAGTACTAGGGCGTGCCACCTCTTGATTACCAA CGACGGACGCAGCACCATCACGGTATGCCAATATTCAAATCGGACGAGTT GGTGTTGCTCTCTCAACCCCACCCTCCGATTTGCCCAAAGAGCTTGTTCT GGGAGCGGTTATGCATTTCATCCACAGGCTACACCAAAGGTGGTCTCGAC CATTGGTGTTTGACGGCAGTAGGCGTTTCGCTACACCCTTCAGCATGTGC TGATTTTTTCGCCTTCTTGAGATTGAGCTCTGTACAATGACTTCGGTTAA ACAATGGAATCGCCATCATTTGAAGGTAGAAGGCCATCTGCGTCGCCCCT TATTCTTGCGGCGGCAGGCCAGCACGCTTACCGAGAAGTACCGAGGCACG GCGTGGCGTGCCCCGGACTGGGGCCCGCGGAGAGCTCGCGCGACCAACAT TACTCGCGACGAGCTCCTCGGCTGCTTGCAGGTGCGCCCTGGCTGCGTAG GTTACGCTTCGACACGTCCATGGGTCTGGTATCATCATCGCTATTTGAGT TTCTTTCTCAGGGACGGCCTTGCTGATTGCGGCGTTTCTCGCAATATGAC TGGCGGTTTCTACAGTGAAGCGGTCATTTTGATATGTATGGCTCGGCAGT ATGTCTCGGGAACGCAGGGATAAACGCATAAATCAGTACAAACGACAGGT CGCCGCCACGACGTAGTTTATTCGTAAGACTCAACAAAGCCGACTGTCTT ACGATTAAATTCTTGTGTTGCGAGTTGTGAAGCACCCGGTGCGATGGTTT ATGTCACTTTCACCAATCAGTCGTCATCAAGAAAGTTGTGGGTTAAATGC ATGGACTGCATGTATGTTTCGCCTGGCTCGTATCAAGACCCGAGGCGCCT TTCTAAACATTTTGTACCACACCGGTATTCGGAATCTTGGAGATGTCAAC GAGAAAAGTTACACACGGTCAACGAACTAGGTAGGTACTGCTCCCCATCG ACTTCATGATCGTCGCAATACCGCCTTCACCAAAGTGTTCCGCGTTAAAC CAACCCAAAACCTCGAGGGTGAAAGGATATTTCCTGCTTGTTTAGTCGGT TTGATAACGCCATGGCAAAACTGTTTGGATGCTACAGCGCCAAATTCGGG AGAGGGAAGAAGAGCGAGTGCGCGGCAATCGTAGGCGGCTGGTCGAAGAG AAGGCTGCCATCGAGAAGGTTCGGCACCGTCGTGTGACGAAAAAAATCTC GCGCCCAACAATCGCTTTGTGTGACGTTGCTGAACACCTGGGTGCAATGT GAGAGGAATTACAAGAAAAACCCGCGCGAGGAGCGTTGCACAGGAAAAGC TTGTTTTCACAAGGAGAGATCGCGGGCGAACGTCTGTCCCACACCAGATC GAAAGCGGTTTTGGCCTGGATTCTAAATCGTTGGTTTTCCAATCCTTCAC CTCGCGTTGTTGCCAATTCCCAGCTGGACCGGGACTACGATGCAAAGGAA GCGTGGAAAAAGGCCGAGAGGGAGGTGGCCCAGATGGAGCTCAAGCGAAG CTGGGAGGTACACGGGCAGATCAAGCGCATGAGAGCCTTAGCCAAGGCTG GCCCAACAGCCCTAAGAAATTACGCGGTACGTTGAATGGCTGATCAAAAA CAACAACACGGGGCCACGAGATGGTTCCATCCGCGCGGATCCCGCAGTTT TCATCCGTTCTCATCTCGACGCCATTCTCTATGCGAAAATTTGATAGTTA GCTTGTTTGGAGGCAGTGGTGGCTTGTGTTCAGGAGGACCCGATTCGCAG GGCATGCATTGATTGACTTTAACCAGAACTGGTACACGTTCGTTCGCGTC TGGCGCCAGCTGGATACTGGTTCAAGCCTCCTTGGTCGCACGTTTTTCTC CTGACTTGGACAGTTTCCCATGGACACATTGTGTGTCAGTTCTGGGAGCA CCTCTCGGAGTCGATTCTACATATGACCCTGTGACGCTTCCATCGAATTA TCCGTCCTGGCCACAAGAGGTTCCCAGCTAAGGGTAAATTGTGTGGGTGG AGAGTGTTAAGGAGGACCCGATTCGCAGGGTATCCGTTGACTGAATTTTT CCCAGAATTGGTACATCCTCGCACTTGCAGGAGACACAGAAGCTTTGGTG GTGGTGACACTGAGCTTATTTCGAAAGTTTTTTACCAAGGACCTATGAAA CGGTTACGTTAGACAAGTTCGGCGGAAGGCGTCGAGCTGATCTCAGGTGA TTTTTCACAAAAAGTCAAGGGGCCGTTGCGAGTATCCGCACATGTGTATC CGACATGCCCCTCTCGGGATCAATCACTGCATCTGACAGCTGAGCCAAAA CATCATCGACCAAGACGGCAAAAACAACGACTCTCCGGAAGGGAGAGCTC GGACTGGTTGGACGGAACCCGGACCCAGAGCAATCACGGGGCCGTCGAAG CTGTACATGAAGGGGGTGTGCAGATATCGCCCGTGGGTGGATGTGAGCGA GGAAGGACGCCGCGTCAACGGCAACGACTGCCGTGGTGGTGGCAGTGGAA ATTATCGACCAGAAGCCGAAGATAGGGATTCTAGGTGAGGTGGTATTATT TGACAGGGGCACGGTTTACACATTACCTCGAGGAATTGAATTTGGTCAAC GCTCGACAAAATGAAGAAACGCGCCAGTATTGAGAGTCACATGACATGGT GACAAAGCGCCGCAGAGCGTCCACCATCGTGAAGAGTGTCGTGGCCAGCA AGCCGGGAGCCTACTCCGTCCTGTGCAATCGGAAAAAACACGTTGGATCA AGTATCCGCCACGTGTGAACTACGGCCGGTTTTGCCCTGAACAACTATCG GTGACAGCCGGAAAGTTGAAACGTACAGTAGTTCACGTCGGAGGCAGACA TGGATCGGCTCATCGTGCTTCCCTTCACGATACCGTTACCCCAAGCGAAA GTGACTGACTCGATGTGCCGATGATTTTCCGTGGGTTATTCTATGGAACC TAGGGCCCACGAAATCGACACTGCTCTCGAGAGAGCCCTGCATTGACTTT CCCCTTTACCCCTCCCTCGCTATAAATGTACTCCCGCATTCCCTGCAGTC GACCTTCAACGGCGCTCTTGGAGACACCTTCATCGGTCGGTTTCGACTCT AGGCTTTCCGCACGACATGTAAACTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2025:1..8877+

>mRNA_Ecto-sp13_S_contig2025.6654.1 ID=mRNA_Ecto-sp13_S_contig2025.6654.1|Name=mRNA_Ecto-sp13_S_contig2025.6654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2025:1..8877+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGAAATACTTGTCCATAGGGGAACCGTGGACGTCCCAAACTTCATGCG
GGTCGGATGGCAGCGTTTTCAAACCTTGGATGGGGAAATGCGACTCCGGC
CGGTTTTCATCCTCAACGAGGGATTTTGCCGCGCGCACGACCTCCCGCAC
AAGCGGATTCTTCGCCCCCCGCTGTTTAGAAAGGCGGCGGAAGCGGTGAA
CTACTCCAAGCTTGCCATCCGCTACACGACTTTTATGACCAAAGACATGG
TCTACGGCGCTCTACGAGAAGTCTTTCGAGGGATAGGGGATGCGATGTCA
TCGGGAGGTCAAGTAAGCGTGGTGTTTTCCTTCGGCACTCTCGAGGTCAA
GGAAAGAAAGTTCCAGTTCACGTTCGACTGCGCGGCCCTCTGTCGGAACG
GGAGCACCACCACGCGTACGGACACCTCGAGCAGCTGCGGTGGAGAGCAC
GAGGAGCGGGAGGAGTGGGACGGGGTTTCTACCGGCAGATCCAGATCATC
CTCGGGGCTACCGCCGCGACCTCCTGCTGGGAGCGGGTTGGGAGCCCGCC
ATGGCAGTGACGACGGCCATCACCATCATGACGACGATCATCTCACGAAT
GCCGAACCACCGCCTGGTACACCTTGCCCGGGTGCCTCGGAGCGGGGTGG
TTGGAACCAGGCGCCAACCGACGATGATGGAGCAGGAGGCCGCAGCTGCC
CTGGGGGGTGTGTGCTCGGCAAGAAGTTCGATGAGGAGGTTGAGAGGCAG
AGAGCCCAGGAGGTTGCGGCGGAGAGGGGAAGGAAGCGTGGGTCCGGCAA
GCGGTGCAGGACACGCGAAAAGGCGAGTCGAAGTCCCACGCGTCTGGTTT
GGGAATCCGCTTTCCGAGACCATGTGACTGCACTGGAGGGTCTAGCCGAG
GATGACGTGAATCTTGCCAACAGGACAAGACTCTTGCAGCTAGCGGAGGA
CAGGAGGAAGTCGGAGGAGCGCGAGAACAAACAGCGCGAGATGCACGACT
TGCTCACCTTTGTGCAGGGACAAATTCATGCAGAGATCGAAGACCGGCGT
GCGCTAGAGGTGGAAAGCAAGAGGAACGGAGAAAAGCCGCTAACATTCAG
CGCTCGCAGAGATCGGGCCAGCACGCTTACCGAGAAGTACCGAGGCACGG
CGTGGCGTGCCCCGGACTGGGGCCCGCGGAGAGCTCGCGCGACCAACATT
ACTCGCGACGAGCTCCTCGGCTGCTTGCAGCGCCAAATTCGGGAGAGGGA
AGAAGAGCGAGTGCGCGGCAATCGTAGGCGGCTGGTCGAAGAGAAGGCTG
CCATCGAGAAGCTGGACCGGGACTACGATGCAAAGGAAGCGTGGAAAAAG
GCCGAGAGGGAGGTGGCCCAGATGGAGCTCAAGCGAAGCTGGGAGGTACA
CGGGCAGATCAAGCGCATGAGAGCCTTAGCCAAGGCTGGCCCAACAGCCC
TAAGAAATTACGCGCTGAGCCAAAACATCATCGACCAAGACGGCAAAAAC
AACGACTCTCCGGAAGGGAGAGCTCGGACTGGTTGGACGGAACCCGGACC
CAGAGCAATCACGGGGCCGTCGAAGCTGTACATGAAGGGGGTGTGCAGAT
ATCGCCCGTGGGTGGATGTGAGCGAGGAAGGACGCCGCGTCAACGGCAAC
GACTGCCGTGGTGGTGGCAGTGGAAATTATCGACCAGAAGCCGAAGATAG
GGATTCTAGTCGACCTTCAACGGCGCTCTTGGAGACACCTTCATCGGTCG
GTTTCGACTCTAGGCTTTCCGCACGACATGTAAACTAA
back to top