mRNA_Ecto-sp13_S_contig20247.6653.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20247.6653.1
Unique NamemRNA_Ecto-sp13_S_contig20247.6653.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: D7G331_ECTSI (Lysocardiolipin acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G331_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 5.690e-136
Identity = 203/207 (98.07%), Postives = 204/207 (98.55%), Query Frame = 1
Query:  130 MVASARGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYLCFRRAYRRWSGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPKV 750
            MVASARGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYL FRRAYRRWSGFVGYLFFAMAAFLLENLCGIKVKITGDR EFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPG GWATQMLLFVFLKRDKTKDLQRVREISDYLVGL+MPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPKV
Sbjct:    1 MVASARGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYLFFRRAYRRWSGFVGYLFFAMAAFLLENLCGIKVKITGDRLEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGFGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLDMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPKV 207          
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: A0A6H5KSC6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC6_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 2.100e-79
Identity = 132/159 (83.02%), Postives = 133/159 (83.65%), Query Frame = 1
Query:  355 VKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQ--------------------MLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPKVVRWLR*C 771
            VKITGDR EFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPG GWATQ                    MLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNH+KSLAFAKKEGLAEYQYVLHPKVVR    C
Sbjct:  147 VKITGDRVEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGFGWATQASKSLGSLRRFSEQASTLEKMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHIKSLAFAKKEGLAEYQYVLHPKVVRGFSEC 305          
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: A0A7S4KEA5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KEA5_GUITH)

HSP 1 Score: 204 bits (518), Expect = 7.250e-61
Identity = 101/207 (48.79%), Postives = 141/207 (68.12%), Query Frame = 1
Query:  148 GFVFVAVLFVSSLLYSVTLLTPAL-LLLIPISPPGVYLCFRRAYRRWSGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPKVVRWLR 765
            G V +  L  S+L+ S+ L+ P+L LL++P          R  YR+WS +V  ++F +A  ++E    +K+ ++GD   + E A+I+CNHRTR+DWMF+WCLCLR G L+ +KIVLK+SLK IPG GWA Q  LFVFL RDK+ DL+ + E+  Y     +P +L+LFPEGTDLSP+N  KS AFA + GL +Y++VLHPKV+ W R
Sbjct:   34 GLVLILTLVWSALVGSMALIMPSLCLLVLPFDGS------RMLYRQWSAYVAKMWFTLATLMIERYAKVKIVLSGDDLPYAEPAMIVCNHRTRIDWMFMWCLCLRLGLLNCMKIVLKDSLKSIPGFGWAMQSFLFVFLARDKSIDLKHMGEMLGYHTNNKLPLSLILFPEGTDLSPHNMAKSDAFASQNGLTKYRHVLHPKVIGWAR 234          
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: A0A835YZY7_9STRA (Lysocardiolipin acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZY7_9STRA)

HSP 1 Score: 190 bits (483), Expect = 8.320e-54
Identity = 100/206 (48.54%), Postives = 139/206 (67.48%), Query Frame = 1
Query:  145 RGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYLCFRRAYRRWSGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPKVVRWL 762
            R  +F+A+L + + +Y + LL PAL +L+ I PP    C R  YR W+G V   +F  AA +LE+L G++V + GD     E ALI+ NHRTRVDWMF+WCLC R  QL+ L+IVL++++K +PG+GW  Q  LFVFL RD+++DL  +R++  YLV  + PTTLLLFPEGTDLS +N  K+  +A+   L  + YVL PKV  +L
Sbjct:   18 RSLLFLALLLLQTFVYVIFLLAPALPMLLSI-PPLRDSCMR-CYRYWAGMVEVAYFGFAAAMLEHLLGVRVVVYGDEVPPRERALILSNHRTRVDWMFIWCLCARTHQLAQLRIVLQDAVKSLPGIGWGCQAFLFVFLARDRSRDLAHMRQVFRYLVTHHYPTTLLLFPEGTDLSRSNLEKAHKYAESRRLQRHDYVLQPKVAGFL 221          
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: L1IMF4_GUITC (PlsC domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IMF4_GUITC)

HSP 1 Score: 186 bits (473), Expect = 4.870e-53
Identity = 98/207 (47.34%), Postives = 133/207 (64.25%), Query Frame = 1
Query:  148 GFVFVAVLFVSSLLYSVTLLTPAL-LLLIPISPPGVYLCFRRAYRRWSGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPKVVRWLR 765
            G V +  L  S+L+ S+ L+ P+L LL++P          R  YR+WS +V                 +K+ ++GD   + E A+I+CNHRTR+DWMF+WCLCLR G L+ +KIVLK+SLK IPG GWA Q  LFVFL RDK+ DL+ + E+  Y     +P +L+LFPEGTDLSP+N  KS AFA + GL +Y++VLHPKV+ W R
Sbjct:    3 GLVLILTLVWSALVGSMALIMPSLCLLVLPFDGS------RMLYRQWSAYVAK---------------VKIVLSGDDLPYAEPAMIVCNHRTRIDWMFMWCLCLRLGLLNCMKIVLKDSLKSIPGFGWAMQSFLFVFLARDKSIDLKHMGEMLGYHTNNKLPLSLILFPEGTDLSPHNMAKSDAFASQNGLTKYRHVLHPKVIGWAR 188          
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: A0A8J4ULC8_CLAMG (Lysocardiolipin acyltransferase 1 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4ULC8_CLAMG)

HSP 1 Score: 155 bits (392), Expect = 1.250e-42
Identity = 89/204 (43.63%), Postives = 121/204 (59.31%), Query Frame = 1
Query:  139 SARGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYLCFRRAYRRW-SGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPK 747
            S RG  F+  LF+SS   SV +L PAL +++ +SP         A+ RW +  +   +  +   LLE + G+KV ITGD    GE ++II NHRTR+DWMFLWC  LR   L   KI LK +LK +PG GWA Q+  F+F+ R    D   +  + +Y   +  P  LLLFPEGTDL+ N   +S  FA+K GL +Y+YVLHP+
Sbjct:    5 SIRGVYFILTLFLSSFFGSVIMLGPALPIML-LSP---------AWYRWLTDRIVATWLTLPVALLEIVFGVKVIITGDGFVPGERSVIIMNHRTRLDWMFLWCCLLRHSYLRLEKICLKAALKAVPGFGWAMQVASFIFIHRKWEDDQNHLTNMLEYFCDIRQPLQLLLFPEGTDLTENTRARSDEFAEKNGLPKYEYVLHPR 198          
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: A0A3B3QP71_9TELE (Lysocardiolipin acyltransferase 1 n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QP71_9TELE)

HSP 1 Score: 159 bits (403), Expect = 2.330e-42
Identity = 91/207 (43.96%), Postives = 125/207 (60.39%), Query Frame = 1
Query:  130 MVASARGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYLCFRRAYRRW-SGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPK 747
            M  SARG  FV  LF++S   SV +L P L L++ +SP         A+ RW +  +   +  +   LLE + G+KV ITGD    GE ++I+ NHRTR+DWMFLWC  LR   L   KI LK +LK +PG GWA Q+  FVF++R   +D + + ++ DY   +  P  LL+FPEGTDL+ N   +S  FA+K GL  Y+YVLHP+
Sbjct:    1 MAVSARGLYFVTTLFLTSFFGSVFMLGPVLPLML-LSP---------AWYRWLTDRIVATWLTLPVALLELVFGVKVVITGDGFIPGERSVIVMNHRTRLDWMFLWCCLLRYSYLRLEKICLKAALKAVPGFGWAMQVACFVFIQRRWEQDRRHLGDMLDYFCAIREPLQLLIFPEGTDLTENTRARSDDFAEKNGLPRYEYVLHPR 197          
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: UPI0007DB7B39 (lysocardiolipin acyltransferase 1 isoform X2 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0007DB7B39)

HSP 1 Score: 154 bits (390), Expect = 4.430e-42
Identity = 92/206 (44.66%), Postives = 122/206 (59.22%), Query Frame = 1
Query:  133 VASARGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYLCFRRAYRRW-SGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPK 747
            + S +G  FV  LF+ S   S+ +L P L L+  +SP         A+ RW +  V   +  +   LLE + G KV ITGD    GE ++II NHRTR+DWMFLW   LR   L   KI LK SLKGIPG GWA Q+  F+F+ R   +D +   ++ DY   ++ P  LLLFPEGTDL+ N   +S AFA+K GL +Y+YVLHP+
Sbjct:    1 MVSWKGIYFVLALFLGSFFGSIFMLAPVLPLMF-VSP---------AWYRWITDRVVATWLTLPVALLEIVFGAKVVITGDGFIPGERSVIIMNHRTRMDWMFLWNCLLRYSYLRLEKICLKSSLKGIPGFGWAMQVAAFIFIHRKWEEDKKHFEKMLDYFCDIHEPLQLLLFPEGTDLTDNTKARSNAFAEKNGLQKYEYVLHPR 196          
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: A0A3B5JVL8_TAKRU (PlsC domain-containing protein n=8 Tax=Eupercaria TaxID=1489922 RepID=A0A3B5JVL8_TAKRU)

HSP 1 Score: 157 bits (398), Expect = 1.130e-41
Identity = 91/207 (43.96%), Postives = 123/207 (59.42%), Query Frame = 1
Query:  130 MVASARGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYLCFRRAYRRW-SGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPK 747
            M  SARG  FV  LF+ S   S+ +L P L L+  +SP         A+ RW +  +   +  +   LLE + G+KV ITGD    GE ++II NHRTR+DWMFLWC  LR   L   KI LK +LK +PG GWA Q+  FVF++R   +D + +  + DY   +  P  LLLFPEGTDL+ N   +S AFA + GL +++YVLHP+
Sbjct:    1 MAVSARGLYFVVTLFLGSFFGSIFMLGPVLPLMF-LSP---------AWYRWITDRIVATWLTLPVSLLELVFGVKVVITGDGFIPGERSVIIMNHRTRLDWMFLWCCLLRYSYLRLEKICLKAALKAVPGFGWAMQVACFVFIQRRWVEDKKHMENMLDYFCDIREPLQLLLFPEGTDLTENTRQRSDAFAAQNGLPKFEYVLHPR 197          
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Match: UPI0015D6416C (lysocardiolipin acyltransferase 1 isoform X2 n=1 Tax=Cygnus atratus TaxID=8868 RepID=UPI0015D6416C)

HSP 1 Score: 153 bits (387), Expect = 1.460e-41
Identity = 95/224 (42.41%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  133 VASARGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYLCFRRAYRRW-SGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVDWMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKDLQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQYVLHPK------VVRWLR*CTCSC 783
            + S +G  FV  LF+ S   S+ +L P L L+  +SP         A+ RW +  V   +  +   LLE + G KV +TGD    GE ++II NHRTR+DWMFLW   LR   L   KI LK SLK IPG GWA Q+  F+F++R    D     ++ DY   +N P  LL+FPEGTDL+ +   +S  FA+K GL +Y+YVLHP+      VV  LR   CSC
Sbjct:    1 MVSWKGIYFVVALFLGSFFGSIFMLGPFLPLMF-VSP---------AWYRWITDCVVATWLTLPVALLEMVFGAKVVVTGDGFVPGERSVIIMNHRTRMDWMFLWNCLLRYSYLRLEKICLKSSLKSIPGFGWAMQVAAFIFIQRKWEDDKSHFEKMLDYFCDINEPLQLLIFPEGTDLTESTKARSNDFAEKNGLRKYEYVLHPRTTGFTFVVECLREDECSC 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20247.6653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G331_ECTSI5.690e-13698.07Lysocardiolipin acyltransferase n=1 Tax=Ectocarpus... [more]
A0A6H5KSC6_9PHAE2.100e-7983.02Reverse transcriptase domain-containing protein n=... [more]
A0A7S4KEA5_GUITH7.250e-6148.79Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A835YZY7_9STRA8.320e-5448.54Lysocardiolipin acyltransferase n=1 Tax=Tribonema ... [more]
L1IMF4_GUITC4.870e-5347.34PlsC domain-containing protein n=2 Tax=Guillardia ... [more]
A0A8J4ULC8_CLAMG1.250e-4243.63Lysocardiolipin acyltransferase 1 (Fragment) n=1 T... [more]
A0A3B3QP71_9TELE2.330e-4243.96Lysocardiolipin acyltransferase 1 n=2 Tax=Paramorm... [more]
UPI0007DB7B394.430e-4244.66lysocardiolipin acyltransferase 1 isoform X2 n=1 T... [more]
A0A3B5JVL8_TAKRU1.130e-4143.96PlsC domain-containing protein n=8 Tax=Eupercaria ... [more]
UPI0015D6416C1.460e-4142.41lysocardiolipin acyltransferase 1 isoform X2 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20247contigEcto-sp13_S_contig20247:367..2750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score402.5
Seed ortholog evalue1.2e-109
Seed eggNOG ortholog2880.D7G331
Preferred nameLCLAT1
Model size961
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K13356,ko:K13513,ko:K14684
KEGG TC2.A.29.23
KEGG ReactionR02241,R09034,R09036,R09037,R09381,R09470
KEGG Pathwayko00073,ko00561,ko00564,ko01100,ko01110,ko04146,ko04212,map00073,map00561,map00564,map01100,map01110,map04146,map04212
KEGG ModuleM00089
Hectar predicted targeting categorysignal anchor
GOsGO:0002009,GO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009653,GO:0009888,GO:0009987,GO:0012505,GO:0016020,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0031984,GO:0032048,GO:0032502,GO:0035965,GO:0042171,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046473,GO:0046474,GO:0046486,GO:0046488,GO:0048729,GO:0048856,GO:0060429,GO:0071617,GO:0071704,GO:0090407,GO:0098827,GO:1901576
Exons3
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG1505@2759
Ec32 ortholog descriptionLysocardiolipin acyltransferase
Ec32 orthologEc-24_003010.1
EC1.2.1.84,2.3.1.51
Cds size639
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.3292234-UTR-Ecto-sp13_S_contig20247:366..4951681463017.3292234-UTR-Ecto-sp13_S_contig20247:366..495Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20247 367..495 +
1681463017.3813026-UTR-Ecto-sp13_S_contig20247:2557..27501681463017.3813026-UTR-Ecto-sp13_S_contig20247:2557..2750Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20247 2558..2750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.3486006-CDS-Ecto-sp13_S_contig20247:495..7201681463017.3486006-CDS-Ecto-sp13_S_contig20247:495..720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20247 496..720 +
1681463017.3564641-CDS-Ecto-sp13_S_contig20247:1668..18511681463017.3564641-CDS-Ecto-sp13_S_contig20247:1668..1851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20247 1669..1851 +
1681463017.3662574-CDS-Ecto-sp13_S_contig20247:2326..25571681463017.3662574-CDS-Ecto-sp13_S_contig20247:2326..2557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20247 2327..2557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20247.6653.1prot_Ecto-sp13_S_contig20247.6653.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20247 496..2557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20247.6653.1

>prot_Ecto-sp13_S_contig20247.6653.1 ID=prot_Ecto-sp13_S_contig20247.6653.1|Name=mRNA_Ecto-sp13_S_contig20247.6653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MVASARGFVFVAVLFVSSLLYSVTLLTPALLLLIPISPPGVYLCFRRAYR
RWSGFVGYLFFAMAAFLLENLCGIKVKITGDRSEFGEAALIICNHRTRVD
WMFLWCLCLRQGQLSSLKIVLKESLKGIPGLGWATQMLLFVFLKRDKTKD
LQRVREISDYLVGLNMPTTLLLFPEGTDLSPNNHLKSLAFAKKEGLAEYQ
YVLHPKVVRWLR*
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mRNA from alignment at Ecto-sp13_S_contig20247:367..2750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20247.6653.1 ID=mRNA_Ecto-sp13_S_contig20247.6653.1|Name=mRNA_Ecto-sp13_S_contig20247.6653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20247:367..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTCTCAGTGGGCGGCCGGCTTCCCAACGACAACGCCCGAGGAGAGC GGACCATCCTTTTGCTTGAAGACAGGAGTGGAAGGAAAGAGTCGTCAAAG TAGTACGCGGCCGTGGTTCATACAACGGCATGGTGGCCTCCGCTCGCGGC TTTGTGTTCGTTGCCGTGCTCTTTGTGTCTTCCCTCTTGTACTCGGTGAC CCTGTTGACGCCGGCGCTGCTGCTGTTGATCCCGATCTCGCCGCCTGGGG TGTACTTATGCTTCCGGAGGGCGTACAGGCGATGGTCTGGCTTCGTCGGT TACCTCTTTTTCGCAATGGCGGCATTCTTGTTGGAGAATTTGTGCGGCAT CAAGGTGCGTACATACGTGCGCGACAAGCAACAAACCAGCGTAGTTGTTG TTGAAGGTCAATGTTGTCCGCTTCGGCTAAGAAAGGTTCAAGTTCCGGTT GGGGTTGAGCGCAGCGCGTGAAGTAGCGGGACACGTGTGGCAGTTTGAAC GTTGTGTATTGCATACAACGCACTGCGATTTACTTTCAATCAATACCAAT CACCTTGCTCACGTTTGAATTAATTTGCTTGTGCGGGTGACAGACCTAGA GGACGTTCCGGGTTCATCCCGGCGTCCTGTATGCTGCAGCACTACAGCAG TACAGCAGGTGTACCGTTCAAAAATGCGGTCAAATCTCTGACTTGTGAGA AGCAGAACATGTACAAGAGACAATATATTCGGACGACAAGGTTTCCTCTG CTGTCAAATCTGATGAATGCATACGTGCACACGCATGAGGGTGTATGCAT ACAGCCATTCTTGCGCAATCAGCGGGTATGTACCACATACAGCAGTAGCG CGAGAGAAAGAAGCAAAATTACGTCAACCAGTCATTTTTTTCACCGCGGT GTGTTTTTGATCTGAGTTCTTTCTCGCCAGGCCGCCATGATGGTGATAGT GATGATGCTTAGCCTGATTCAACTCAACCTACACCCAACTTCTGCGTGTG TGCGCCCTTTTCTACTCATACGGAACCTGACTGGTGTTGTAGTCGATAGT GGCCTAGGACCATCCCGCTGCCCAGCATCTCCCGACGATCACAGTAGATT GTCTTGGGTACACATCGTACGGGTGCATCCGAGTATCGCCGCGGATTGCA TTCTGCACATTGAGACTCTCTCTTCCTAATCAAAGAGCACGCTTGTCCCG GTACCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTAGATTACAAGGAG GAAATAAATCATGACACAACAAATCTCGGCCTGGTGTATTGCCCTTACTC AGGTGAAAATCACAGGAGACCGTTCGGAGTTTGGAGAAGCCGCCTTGATC ATCTGTAACCACCGTACGAGGGTGGACTGGATGTTCCTGTGGTGCTTGTG CCTGCGACAAGGACAGCTATCGAGCCTGAAGATCGTCTTGAAGGAATCGC TCAAGGGAATTCCAGGGCTCGGTTGGGCCACCCAGGCGAGCGAAACCCTC CCGGTAGTCCACGCAGATTTTCCGAGTGTATGCAAACATGTTGAATATCG TATGGAATCGGCTAAGTTAGGGTTGCGGTCTGCGTTGCCCCTGCCTGATC TTTCTTCCGTAGACACCTACTTTTCTTTGCGTGTAGACAGTCCGAAAACG TCAGGCGTTTTGCCATTTGTCGATGTTTTGCTGTCGTTCGTCTTTTCTCT GTTGTGCTACAGTATTGTTTACCCAGTAGTTTCCAGGGAATCGACACTAA TCCTTGACCGAGTAGGACGCATGCCACATTACAGTGGCAGCTGCGAGAAT CTCGAGGAGTTGGTTGAGTTGAAGGTTTCAAGCAACGAAGCTCTTGCTTG CCGCGCAGAAAGGCGGCGAAGCTTCGCTGCCATTGTTGTTGCTCTCTCCT CGTTGCTTACAGCCGAATATTTGCTCGATCGGGAACGTATGTATCGCGGC ATGATAACAGATGCTGCTCTTCGTGTTCCTGAAGAGAGACAAGACCAAGG ACTTGCAGCGGGTGAGGGAGATCAGCGACTACCTAGTGGGCCTCAACATG CCCACGACGCTGCTCCTGTTCCCGGAGGGCACAGACTTGAGCCCGAACAA CCACCTCAAGAGCCTCGCCTTCGCCAAGAAGGAAGGGCTCGCCGAGTACC AGTACGTGCTGCATCCGAAGGTGGTTCGATGGCTTCGGTGATGCACATGC AGTTGTCTTTTGGTATAAATCCATTTCTTAATTGTTGATAAAGAGTACAG AATATGTTGGCCTCATTTCGTGCTTGAGCGGGTGTTGTGGGGTCTCACGG CTCTGCCTCCCGTTGCAACCGGGCTGACGCCACACATACCATGACCATCG AAGCAGTTACAGATTAATCCATGCGGTGCTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20247:367..2750+

>mRNA_Ecto-sp13_S_contig20247.6653.1 ID=mRNA_Ecto-sp13_S_contig20247.6653.1|Name=mRNA_Ecto-sp13_S_contig20247.6653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20247:367..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCCTCCGCTCGCGGCTTTGTGTTCGTTGCCGTGCTCTTTGTGTC
TTCCCTCTTGTACTCGGTGACCCTGTTGACGCCGGCGCTGCTGCTGTTGA
TCCCGATCTCGCCGCCTGGGGTGTACTTATGCTTCCGGAGGGCGTACAGG
CGATGGTCTGGCTTCGTCGGTTACCTCTTTTTCGCAATGGCGGCATTCTT
GTTGGAGAATTTGTGCGGCATCAAGGTGAAAATCACAGGAGACCGTTCGG
AGTTTGGAGAAGCCGCCTTGATCATCTGTAACCACCGTACGAGGGTGGAC
TGGATGTTCCTGTGGTGCTTGTGCCTGCGACAAGGACAGCTATCGAGCCT
GAAGATCGTCTTGAAGGAATCGCTCAAGGGAATTCCAGGGCTCGGTTGGG
CCACCCAGATGCTGCTCTTCGTGTTCCTGAAGAGAGACAAGACCAAGGAC
TTGCAGCGGGTGAGGGAGATCAGCGACTACCTAGTGGGCCTCAACATGCC
CACGACGCTGCTCCTGTTCCCGGAGGGCACAGACTTGAGCCCGAACAACC
ACCTCAAGAGCCTCGCCTTCGCCAAGAAGGAAGGGCTCGCCGAGTACCAG
TACGTGCTGCATCCGAAGGTGGTTCGATGGCTTCGGTGA
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