mRNA_Ecto-sp13_S_contig20246.6652.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20246.6652.1
Unique NamemRNA_Ecto-sp13_S_contig20246.6652.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20246.6652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20246contigEcto-sp13_S_contig20246:2288..2953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size667
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.2886195-UTR-Ecto-sp13_S_contig20246:2287..26141681463017.2886195-UTR-Ecto-sp13_S_contig20246:2287..2614Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20246 2288..2614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.297073-CDS-Ecto-sp13_S_contig20246:2614..29531681463017.297073-CDS-Ecto-sp13_S_contig20246:2614..2953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20246 2615..2953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20246.6652.1prot_Ecto-sp13_S_contig20246.6652.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20246 2615..2953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20246.6652.1

>prot_Ecto-sp13_S_contig20246.6652.1 ID=prot_Ecto-sp13_S_contig20246.6652.1|Name=mRNA_Ecto-sp13_S_contig20246.6652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MKSSLLLPRAPRYSLSSTTERETRVSYDRERSELTDNNKPQPTKEKKCTS
GPWRLHDQRAAASVHGTRRNETKGMQPQFPGPCMLWAVVSDTLTTPHPGS
ACTLLYTSHDLAQ
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mRNA from alignment at Ecto-sp13_S_contig20246:2288..2953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20246.6652.1 ID=mRNA_Ecto-sp13_S_contig20246.6652.1|Name=mRNA_Ecto-sp13_S_contig20246.6652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20246:2288..2953+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCATTGCAACAGTAATAAGTAGTGGTAGCCTTCGAAGGTTTCTTGCAT
TTAGCACACATATTGGATAGGGCGTACAATCGGGGAAGTTGGGTTGGGGT
TAGGGTTAAGGAATGGGGCCTGCGTCCCCCTCCCATCTCTATTTCCTTAT
AAACTTCTAGATCACGTGAAGGCGGTCCGATTGCAAGCAGACGGAGAAGG
CGCAGCAGCCCTCGCAACGACCCAGCTCGGACGCCGCTCGCCACTCTTCG
CTCTCGGTCTCGACACTTCGCCAGAAAAGATACAAGTCAGTTCGTCCTCG
GCTTAACAATATTGTACGATATTCTTGATGAAGTCCTCGCTACTTCTGCC
TCGCGCGCCACGTTACTCCTTGAGCTCTACGACTGAACGAGAGACACGAG
TTTCTTACGACAGAGAGAGATCGGAACTCACAGACAACAACAAACCACAG
CCCACAAAAGAAAAAAAATGTACAAGTGGACCTTGGCGTCTTCATGATCA
ACGCGCCGCGGCCTCCGTGCATGGCACAAGAAGAAACGAAACAAAGGGTA
TGCAACCACAGTTTCCTGGGCCATGCATGCTCTGGGCGGTCGTGTCAGAT
ACCCTCACAACCCCCCACCCCGGGAGTGCTTGCACCCTCCTATACACCTC
CCACGACCTTGCTCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20246:2288..2953+

>mRNA_Ecto-sp13_S_contig20246.6652.1 ID=mRNA_Ecto-sp13_S_contig20246.6652.1|Name=mRNA_Ecto-sp13_S_contig20246.6652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20246:2288..2953+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCTCGCTACTTCTGCCTCGCGCGCCACGTTACTCCTTGAGCTC
TACGACTGAACGAGAGACACGAGTTTCTTACGACAGAGAGAGATCGGAAC
TCACAGACAACAACAAACCACAGCCCACAAAAGAAAAAAAATGTACAAGT
GGACCTTGGCGTCTTCATGATCAACGCGCCGCGGCCTCCGTGCATGGCAC
AAGAAGAAACGAAACAAAGGGTATGCAACCACAGTTTCCTGGGCCATGCA
TGCTCTGGGCGGTCGTGTCAGATACCCTCACAACCCCCCACCCCGGGAGT
GCTTGCACCCTCCTATACACCTCCCACGACCTTGCTCAA
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