mRNA_Ecto-sp13_S_contig20239.6649.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20239.6649.1
Unique NamemRNA_Ecto-sp13_S_contig20239.6649.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20239.6649.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE)

HSP 1 Score: 357 bits (916), Expect = 1.640e-110
Identity = 237/336 (70.54%), Postives = 244/336 (72.62%), Query Frame = 1 
Query:    1 LSRRLEEAASARAEEAHRDVVAQKRKAVAARSENAELVRAQREACERRAAALRQEQRALELLEADGRQLIADADVARGQRERVYRHAAARVRERREAREEAERRVRAVRSEGHATARKAESVLTAEGRSMRPVPLLRDPVEVQRVTDKRAERATRDAEALRK-----------------------------------------VSASGMATIKAVAKSRVRKVVHDAFPVADPPPASGGAAVKEEVPGPLTAEIKEAAQLSKDARVLVQHDP-------------------------TMSFEQALKVLAATRRSRTEQRGKRKAWDSGSVDGRVPG 810
            LSRRLEEAASARAEEAHRDVVAQKRKAVAARSENAELVRAQREACERRAA LR+EQRALELLEADGRQLIA+A+VARGQRE V         ERREAREEAERRVRAVR EGHATAR AESVL+AEGRSMRPVPLLRDPVEVQRVT KRAERA RDAEALRK                                         VSAS MATIKAVAKSRVRKVVHDAFPV DP PASGGA VK EVPG L+AEI+EAAQ+SK ARVLVQHDP                         TMSFEQALK LAA RR RTEQRGKRKAWDSGSVDGR PG
Sbjct:  510 LSRRLEEAASARAEEAHRDVVAQKRKAVAARSENAELVRAQREACERRAAELRREQRALELLEADGRQLIAEANVARGQRESVC--------ERREAREEAERRVRAVRGEGHATARMAESVLSAEGRSMRPVPLLRDPVEVQRVTHKRAERAARDAEALRKGPEGGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSASDMATIKAVAKSRVRKVVHDAFPVVDPAPASGGAEVKGEVPGLLSAEIEEAAQMSKAARVLVQHDPXXXXXXXXXXXXXXXXXXXXXXXXXTMSFEQALKGLAAIRRFRTEQRGKRKAWDSGSVDGRAPG 837
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BLAST of mRNA_Ecto-sp13_S_contig20239.6649.1 vs. uniprot
Match: D7G6J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J9_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 7.630e-41
Identity = 107/177 (60.45%), Postives = 128/177 (72.32%), Query Frame = 1 
Query:    1 LSRRLEEAASARAEEAHRDVVAQKRKAVAARSENAELVRAQREACERRAAALRQEQRALELLEADGRQLIADADVARGQRERVYRHAAARVRERREAREEAERRVRAVRSEGHATARKAESVLTAEGRSMRPVPLLRDPVEVQRVTDKRAERATRDAEALRKVSASGMATIKAVAKS 531
            + RRLEEAASARA EA RDVVA+K K +AAR ENAELVRAQ EACERR A LR+EQ+ALE+LEA GRQL+ DA+V RG+RER++R A  R R+R        RRV  VR EGHATA +AESVL  EGRSMRPV  L+DP E +R+ DK   R  +D   L++VSA  +A +  VA S
Sbjct:    1 MRRRLEEAASARAAEAQRDVVAEKPKTLAARRENAELVRAQSEACERRVAELRREQQALEILEAQGRQLVIDANVVRGERERIFRRADERARQRXXXXXXXXRRVWEVRGEGHATAVRAESVLREEGRSMRPVSQLKDPQEARRIVDKLEARKAKDVAVLQRVSAEDVAKVTEVAIS 177
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BLAST of mRNA_Ecto-sp13_S_contig20239.6649.1 vs. uniprot
Match: D7G3H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H7_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 2.840e-37
Identity = 93/133 (69.92%), Postives = 108/133 (81.20%), Query Frame = 1 
Query:    1 LSRRLEEAASARAEEAHRDVVAQKRKAVAARSENAELVRAQREACERRAAALRQEQRALELLEADGRQLIADADVARGQRERVYRHAAARVRERREAREEAERRVRAVRSEGHATARKAESVLTAEGRSMRPV 399
            + RRLEEA SARA E  +DVVA+KRKA+AAR ENAELVRAQREACE R A LR+EQ+ LE+LEA GRQL+ DA++ RG+RER++R A  RVR+RR  RE AERRV  VR EGHATA +AESVL  EGRSMRPV
Sbjct:  240 IQRRLEEAVSARAAEVQQDVVAEKRKALAARRENAELVRAQREACECRVAELRREQQVLEILEAQGRQLVDDANIVRGERERIFRRAEERVRQRRAEREAAERRVWEVRGEGHATAVRAESVLRDEGRSMRPV 372
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20239.6649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZQ9_9PHAE1.640e-11070.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J9_ECTSI7.630e-4160.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3H7_ECTSI2.840e-3769.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20239contigEcto-sp13_S_contig20239:78..889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size812
Hectar predicted targeting categoryother localisation
Exons1
Cds size810
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463017.054461-CDS-Ecto-sp13_S_contig20239:79..8891681463017.054461-CDS-Ecto-sp13_S_contig20239:79..889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20239 80..889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20239.6649.1prot_Ecto-sp13_S_contig20239.6649.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20239 80..889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20239.6649.1

>prot_Ecto-sp13_S_contig20239.6649.1 ID=prot_Ecto-sp13_S_contig20239.6649.1|Name=mRNA_Ecto-sp13_S_contig20239.6649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=270bp
LSRRLEEAASARAEEAHRDVVAQKRKAVAARSENAELVRAQREACERRAA
ALRQEQRALELLEADGRQLIADADVARGQRERVYRHAAARVRERREAREE
AERRVRAVRSEGHATARKAESVLTAEGRSMRPVPLLRDPVEVQRVTDKRA
ERATRDAEALRKVSASGMATIKAVAKSRVRKVVHDAFPVADPPPASGGAA
VKEEVPGPLTAEIKEAAQLSKDARVLVQHDPTMSFEQALKVLAATRRSRT
EQRGKRKAWDSGSVDGRVPG
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mRNA from alignment at Ecto-sp13_S_contig20239:78..889-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20239.6649.1 ID=mRNA_Ecto-sp13_S_contig20239.6649.1|Name=mRNA_Ecto-sp13_S_contig20239.6649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=812bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20239:78..889- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAGCCGACGCTTGGAAGAGGCCGCGTCCGCGCGGGCGGAGGAAGCGCA
CCGGGACGTAGTAGCTCAGAAGCGGAAGGCTGTTGCGGCTCGGTCCGAAA
ATGCGGAGCTGGTGCGCGCCCAGCGGGAGGCCTGTGAGCGTAGGGCGGCC
GCCCTCCGGCAAGAGCAGCGGGCACTCGAGCTGCTTGAAGCGGACGGGCG
CCAGCTCATCGCGGACGCCGACGTCGCTCGCGGCCAGCGTGAGCGGGTCT
ACCGACATGCCGCGGCGCGGGTCCGCGAGCGCCGGGAGGCCCGGGAGGAG
GCGGAGCGCCGGGTGCGAGCGGTTCGAAGTGAGGGCCACGCGACCGCGCG
GAAGGCGGAATCGGTCCTCACCGCGGAAGGCCGGTCGATGCGCCCGGTGC
CCCTGCTGCGGGACCCTGTGGAGGTTCAGCGTGTAACAGACAAACGGGCG
GAGCGCGCGACTCGCGACGCCGAGGCTCTCCGCAAGGTGTCCGCATCGGG
CATGGCCACCATCAAGGCGGTCGCTAAGTCCAGGGTCCGGAAGGTGGTTC
ACGATGCCTTCCCTGTCGCTGATCCTCCTCCTGCATCGGGCGGTGCTGCG
GTCAAGGAGGAGGTGCCCGGTCCCCTGACCGCCGAAATAAAGGAGGCGGC
GCAATTGTCCAAGGATGCTCGGGTGCTTGTCCAACATGATCCGACGATGT
CCTTCGAGCAGGCTCTAAAGGTGCTTGCTGCTACCCGCCGGTCTCGCACG
GAGCAGCGCGGCAAGCGCAAGGCTTGGGACTCCGGGTCTGTCGACGGTCG
TGTCCCCGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20239:78..889-

>mRNA_Ecto-sp13_S_contig20239.6649.1 ID=mRNA_Ecto-sp13_S_contig20239.6649.1|Name=mRNA_Ecto-sp13_S_contig20239.6649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20239:78..889- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAGCCGACGCTTGGAAGAGGCCGCGTCCGCGCGGGCGGAGGAAGCGCA
CCGGGACGTAGTAGCTCAGAAGCGGAAGGCTGTTGCGGCTCGGTCCGAAA
ATGCGGAGCTGGTGCGCGCCCAGCGGGAGGCCTGTGAGCGTAGGGCGGCC
GCCCTCCGGCAAGAGCAGCGGGCACTCGAGCTGCTTGAAGCGGACGGGCG
CCAGCTCATCGCGGACGCCGACGTCGCTCGCGGCCAGCGTGAGCGGGTCT
ACCGACATGCCGCGGCGCGGGTCCGCGAGCGCCGGGAGGCCCGGGAGGAG
GCGGAGCGCCGGGTGCGAGCGGTTCGAAGTGAGGGCCACGCGACCGCGCG
GAAGGCGGAATCGGTCCTCACCGCGGAAGGCCGGTCGATGCGCCCGGTGC
CCCTGCTGCGGGACCCTGTGGAGGTTCAGCGTGTAACAGACAAACGGGCG
GAGCGCGCGACTCGCGACGCCGAGGCTCTCCGCAAGGTGTCCGCATCGGG
CATGGCCACCATCAAGGCGGTCGCTAAGTCCAGGGTCCGGAAGGTGGTTC
ACGATGCCTTCCCTGTCGCTGATCCTCCTCCTGCATCGGGCGGTGCTGCG
GTCAAGGAGGAGGTGCCCGGTCCCCTGACCGCCGAAATAAAGGAGGCGGC
GCAATTGTCCAAGGATGCTCGGGTGCTTGTCCAACATGATCCGACGATGT
CCTTCGAGCAGGCTCTAAAGGTGCTTGCTGCTACCCGCCGGTCTCGCACG
GAGCAGCGCGGCAAGCGCAAGGCTTGGGACTCCGGGTCTGTCGACGGTCG
TGTCCCCGGA
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