mRNA_Ecto-sp13_S_contig20227.6644.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20227.6644.1
Unique NamemRNA_Ecto-sp13_S_contig20227.6644.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 7.660e-42
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLYTGENTSTSSLVGCYQDESDARIMEFALTDTSSMTM 234
            +CWCGSDGADYALHGES +CTYPCSGDA Q CGGFD ANVYL+TGE TSTSSLVGCYQDESDARIMEFALTDTSSMTM
Sbjct:  140 ECWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVYLFTGE-TSTSSLVGCYQDESDARIMEFALTDTSSMTM 216          
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 7.400e-37
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLYTGENTSTSSLVGCYQDESDARIMEFALTDTSSMT 231
            +CWCGS G DYALHGES DCTY C+G+A QTCGGFD ANVY YT E+T TSS VGCYQDESDAR+ME ALTD+SSMT
Sbjct:   23 ECWCGSAGMDYALHGESTDCTYGCAGNADQTCGGFDAANVYRYTNESTPTSSFVGCYQDESDARMMELALTDSSSMT 99          
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.970e-34
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLYTGENT-STSSLVGCYQDESDARIMEFALTDTSSMT 231
            +CWCGS GADY LHGES DCTY C+GDA QTCGGFD ANVYLYTG++  STS+ VGCYQDESDARIME ALTD+SSMT
Sbjct:  373 ECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVYLYTGDDALSTSTFVGCYQDESDARIMELALTDSSSMT 450          
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 4.870e-34
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    1 QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLYTGENTSTSSLVGCYQDESDARIMEFALTDTSSMT 231
            +CWCGS G +YALHGES DCTY C+GDA QTCGGFD ANVY YT E+T TSS VGCYQDESDARIME ALTD+SSMT
Sbjct:  678 ECWCGSAGVEYALHGESTDCTYACAGDADQTCGGFDAANVYRYTDESTPTSSFVGCYQDESDARIMELALTDSSSMT 754          
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.730e-33
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLYTGENT-STSSLVGCYQDESDARIMEFALTDTSSMT 231
            +CWCGS GADY LHGES DCTY C+GDA QTCGGFD ANVYLYTG++  +TSS VGCYQDESDARIME ALTD+SSMT
Sbjct:  788 ECWCGSAGADYILHGESADCTYACAGDADQTCGGFDAANVYLYTGDDVPTTSSFVGCYQDESDARIMELALTDSSSMT 865          
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.300e-32
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLYTGENTSTSSLVGCYQDESDARIMEFALTDTSSMTM 234
            +CWCGS   DYALHGES DCTY C+GDA QTCGGFD ANVY YT E+T+ S+ VGCYQDES +RIME ALTD+SSM+M
Sbjct:  251 ECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTDESTAISAFVGCYQDESGSRIMELALTDSSSMSM 328          
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: A0A6H5JX48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.040e-23
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLYTGENTSTSS----------LVGCYQDESDARIMEFALTDTSSMT 231
            +CWCGS GADYALHGES DCTYPC+GDA Q CGGFD ANVY YT  +T + +           +GCY+D+ + RIM+  +   SSMT
Sbjct:  604 ECWCGSAGADYALHGESTDCTYPCAGDADQMCGGFDAANVYRYTDGSTPSPTPSPTEAGSHLALGCYEDDREDRIMDELVLSDSSMT 690          
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.970e-21
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLY-TGENTSTSSLVGCYQDESDARIMEFALTDTSSMT 231
            +CWCG  G DY  HGES +CTY C G+  +TCGGF  A+VY Y T E T T S VGC+QD+ D RIME ALT++SSMT
Sbjct:  172 ECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQD-RIMELALTESSSMT 248          
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.520e-21
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLYTGENTSTSS----------LVGCYQDESDARIMEFALTDTSSMT 231
            +CWCGS GADYALHGES DCTY CSGD  QTCGGFD ANVY Y  ++T + +           +GCY D+ + RIM+  +    SMT
Sbjct:  351 ECWCGSAGADYALHGESTDCTYACSGDTDQTCGGFDAANVYRYPDDSTPSPTPSPTEAASFVALGCYGDDREDRIMDELVLSDPSMT 437          
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Match: D7FTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.460e-18
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 1
Query:   76 GDAAQTCGGFDVANVYLYTGENTSTSSLVGCYQDESDARIMEFALTDTSSMTM 234
            GDA QTCGGFD ANVY YT  N  TSS VGCYQDESDARIME ALTD+SSMTM
Sbjct:  352 GDADQTCGGFDAANVYQYTDGNAPTSSFVGCYQDESDARIMELALTDSSSMTM 404          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20227.6644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LEL0_ECTSI7.660e-4289.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE8_ECTSI7.400e-3777.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS2_ECTSI1.970e-3479.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE6_ECTSI4.870e-3479.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS1_ECTSI1.730e-3379.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTD7_ECTSI2.300e-3273.08WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JX48_9PHAE8.040e-2355.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNS1_ECTSI3.970e-2160.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEK9_ECTSI4.520e-2152.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTD8_ECTSI1.460e-1881.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20227contigEcto-sp13_S_contig20227:943..1176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score148.3
Seed ortholog evalue1.5e-33
Seed eggNOG ortholog2880.D8LEL0
Model size234
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Cds size234
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463016.711279-CDS-Ecto-sp13_S_contig20227:942..11761681463016.711279-CDS-Ecto-sp13_S_contig20227:942..1176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20227 943..1176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20227.6644.1prot_Ecto-sp13_S_contig20227.6644.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20227 943..1176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20227.6644.1

>prot_Ecto-sp13_S_contig20227.6644.1 ID=prot_Ecto-sp13_S_contig20227.6644.1|Name=mRNA_Ecto-sp13_S_contig20227.6644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
QCWCGSDGADYALHGESNDCTYPCSGDAAQTCGGFDVANVYLYTGENTST
SSLVGCYQDESDARIMEFALTDTSSMTM
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mRNA from alignment at Ecto-sp13_S_contig20227:943..1176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20227.6644.1 ID=mRNA_Ecto-sp13_S_contig20227.6644.1|Name=mRNA_Ecto-sp13_S_contig20227.6644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20227:943..1176+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGCTGGTGTGGTTCTGATGGTGCGGACTACGCTTTGCACGGGGAGTC CAACGACTGCACCTACCCCTGCTCGGGGGACGCTGCCCAAACGTGCGGCG GGTTTGATGTCGCCAACGTGTACCTTTACACGGGCGAGAACACGTCGACA TCGTCCCTCGTGGGATGCTACCAGGACGAATCGGATGCCCGCATCATGGA ATTCGCGCTGACGGACACTTCTTCGATGACAATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20227:943..1176+

>mRNA_Ecto-sp13_S_contig20227.6644.1 ID=mRNA_Ecto-sp13_S_contig20227.6644.1|Name=mRNA_Ecto-sp13_S_contig20227.6644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20227:943..1176+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGCTGGTGTGGTTCTGATGGTGCGGACTACGCTTTGCACGGGGAGTC
CAACGACTGCACCTACCCCTGCTCGGGGGACGCTGCCCAAACGTGCGGCG
GGTTTGATGTCGCCAACGTGTACCTTTACACGGGCGAGAACACGTCGACA
TCGTCCCTCGTGGGATGCTACCAGGACGAATCGGATGCCCGCATCATGGA
ATTCGCGCTGACGGACACTTCTTCGATGACAATG
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