mRNA_Ecto-sp13_S_contig2022.6642.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A6H5L214_9PHAE (Plug_translocon domain-containing protein n=3 Tax=PX clade TaxID=569578 RepID=A0A6H5L214_9PHAE) HSP 1 Score: 165 bits (417), Expect = 4.370e-47 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG
Sbjct: 82 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 171
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A7S2XXJ1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXJ1_9STRA) HSP 1 Score: 156 bits (395), Expect = 7.430e-44 Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
IVTS LVMQLLAGSRIIEVNQ++KEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDL TLGAGNAILII QLFFAGLIVIILDELLQKG
Sbjct: 82 IVTSGLVMQLLAGSRIIEVNQALKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLGTLGAGNAILIIAQLFFAGLIVIILDELLQKG 171
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A482RU87_9ARCH (Preprotein translocase subunit SecY n=2 Tax=cellular organisms TaxID=131567 RepID=A0A482RU87_9ARCH) HSP 1 Score: 151 bits (382), Expect = 1.570e-42 Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
I+TS LVMQLLAGSRIIEVNQS+KEDRALF+GAQKLFGILITIGEA+AYVVSGMYGDL+TLGAGNAILII QLF AG++VIILDELLQKG
Sbjct: 9 IITSGLVMQLLAGSRIIEVNQSLKEDRALFNGAQKLFGILITIGEAIAYVVSGMYGDLATLGAGNAILIILQLFAAGMVVIILDELLQKG 98
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A6V2TM26_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TM26_HETAK) HSP 1 Score: 151 bits (382), Expect = 5.940e-42 Identity = 78/90 (86.67%), Postives = 87/90 (96.67%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
IVTS LVMQLLAGSRIIEVNQ +KEDRALF+GAQKLFGILIT+GEAVAYV+SGMYGDL+TLGAGNA+LII QLFFAGL+V++LDELLQKG
Sbjct: 82 IVTSGLVMQLLAGSRIIEVNQGVKEDRALFNGAQKLFGILITLGEAVAYVISGMYGDLATLGAGNALLIITQLFFAGLVVLLLDELLQKG 171
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A812V906_SYMMI (Sec61a protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V906_SYMMI) HSP 1 Score: 148 bits (374), Expect = 9.300e-42 Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
IVTS LVMQLLAGSRIIEVNQS+KEDRALFSGAQKLFGILIT+GEA+AYVVSGMYGDL++LGAGNA+LII QL AGL++IILDELLQKG
Sbjct: 82 IVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITVGEAIAYVVSGMYGDLNSLGAGNALLIILQLIAAGLVIIILDELLQKG 171
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A7S1MN71_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MN71_ALECA) HSP 1 Score: 141 bits (355), Expect = 1.950e-41 Identity = 72/90 (80.00%), Postives = 85/90 (94.44%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
I+TS +VMQLLAGSRII+V+QS+KEDRALF GAQKLFG+LIT+GEAVAYV+SGMYGDL LGAGN++LII QLFFAG+IVI+LDEL+QKG
Sbjct: 24 IITSGMVMQLLAGSRIIDVDQSLKEDRALFGGAQKLFGMLITMGEAVAYVMSGMYGDLRELGAGNSLLIIMQLFFAGIIVILLDELMQKG 113
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A0G4G804_VITBC (Plug_translocon domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G804_VITBC) HSP 1 Score: 148 bits (374), Expect = 8.880e-41 Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
IVTS +VMQLLAGS+II+V+QS+KEDRALFSGAQKLFG+LITIGEA+AYVVSGMYGDL LGAGNAILII QLFFAGLIVIILDELLQKG
Sbjct: 86 IVTSGMVMQLLAGSKIIDVDQSLKEDRALFSGAQKLFGMLITIGEAIAYVVSGMYGDLKELGAGNAILIILQLFFAGLIVIILDELLQKG 175
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A7S4MCE0_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4MCE0_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.220e-40 Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
IVTS LVMQLLAGSRIIEVN ++KEDRALF GAQKLFGILIT+GEA+AYVVSGMYGDL+T+GAGNA+LII QLFFAGLIV+ LDELLQKG
Sbjct: 82 IVTSGLVMQLLAGSRIIEVNYNVKEDRALFQGAQKLFGILITVGEAIAYVVSGMYGDLATIGAGNALLIISQLFFAGLIVLTLDELLQKG 171
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A4D9D8Z0_9STRA (Plug_translocon domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8Z0_9STRA) HSP 1 Score: 147 bits (370), Expect = 3.350e-40 Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
IVTS LVMQLLAGSRIIEVNQS+KEDRALFSGAQKLFGILITIGEAVAYV SGMYGDL++LG GNAILII QLF AG+IVI LDELLQKG
Sbjct: 84 IVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKG 173
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Match: A0A7S1D8Y6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8Y6_CYCTE) HSP 1 Score: 144 bits (362), Expect = 6.730e-40 Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1
Query: 1 IVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 270
IVTS LVMQLLAGSRIIEV+ ++KEDRALFSGAQKLFGILIT+GEA+AYVVSGMYGDL ++GAGNAILII QLF AGLIV+ LDELLQKG
Sbjct: 88 IVTSGLVMQLLAGSRIIEVDYNVKEDRALFSGAQKLFGILITVGEAIAYVVSGMYGDLGSIGAGNAILIIAQLFCAGLIVLTLDELLQKG 177 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2022.6642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig2022.6642.1 >prot_Ecto-sp13_S_contig2022.6642.1 ID=prot_Ecto-sp13_S_contig2022.6642.1|Name=mRNA_Ecto-sp13_S_contig2022.6642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp MQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDback to top mRNA from alignment at Ecto-sp13_S_contig2022:13763..14933+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig2022.6642.1 ID=mRNA_Ecto-sp13_S_contig2022.6642.1|Name=mRNA_Ecto-sp13_S_contig2022.6642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2022:13763..14933+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2022:13763..14933+ >mRNA_Ecto-sp13_S_contig2022.6642.1 ID=mRNA_Ecto-sp13_S_contig2022.6642.1|Name=mRNA_Ecto-sp13_S_contig2022.6642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2022:13763..14933+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |