mRNA_Ecto-sp13_S_contig2022.6641.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: A0A836CIL5_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL5_9STRA) HSP 1 Score: 174 bits (441), Expect = 6.900e-54 Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = 3
Query: 39 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFDHDFLAIVIQRWQPAGVA 344
M++VEETLERIKVQPGVEGYVICDM+GQVLRRFPTMSQETAE+YA +M HLA KARGVVRD+NPK EL Y+RIRAKRHEV+VAFD +FLAIVIQRWQPAG +
Sbjct: 1 MAQVEETLERIKVQPGVEGYVICDMQGQVLRRFPTMSQETAEMYAASMMHLAHKARGVVRDLNPKSELNYLRIRAKRHEVMVAFDKEFLAIVIQRWQPAGTS 102
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: D7FWL6_ECTSI (Robl_LC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL6_ECTSI) HSP 1 Score: 165 bits (418), Expect = 1.380e-50 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 3
Query: 39 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFDHD 299
MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAF +
Sbjct: 1 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFGEE 87
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: A0A6T7GUX9_9STRA (Dynein light chain roadblock n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7GUX9_9STRA) HSP 1 Score: 157 bits (396), Expect = 4.880e-47 Identity = 76/100 (76.00%), Postives = 90/100 (90.00%), Query Frame = 3
Query: 39 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFDHDFLAIVIQRWQPAG 338
MSEVEETLER+KVQ GVEGYVIC+ +G VLRRFP MSQE AE YA++MRHLA KARGVVRD+NP+ EL+Y+RIRAKRHEV++AFD++FL IVIQ+W PAG
Sbjct: 1 MSEVEETLERVKVQNGVEGYVICNRQGLVLRRFPQMSQEHAEQYADSMRHLANKARGVVRDLNPQNELRYLRIRAKRHEVMIAFDNEFLVIVIQKWTPAG 100
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: A0A6U1LT09_9STRA (Dynein light chain roadblock n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LT09_9STRA) HSP 1 Score: 155 bits (391), Expect = 2.810e-46 Identity = 74/99 (74.75%), Postives = 91/99 (91.92%), Query Frame = 3
Query: 39 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFDHDFLAIVIQRWQPA 335
MSEVEETLER+KVQPGVEGYVIC+ +GQVLRRFP+M Q+ AE+YA++MR LA KARGVVRD+NP+ EL+Y+RIRA+R EV+VA+D++FL IVIQRWQPA
Sbjct: 1 MSEVEETLERVKVQPGVEGYVICNKQGQVLRRFPSMRQDLAELYADSMRCLAAKARGVVRDLNPQHELRYLRIRARREEVMVAYDNEFLVIVIQRWQPA 99
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: F0Y2Y8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Y8_AURAN) HSP 1 Score: 150 bits (379), Expect = 1.820e-44 Identity = 73/99 (73.74%), Postives = 85/99 (85.86%), Query Frame = 3
Query: 39 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFDHDFLAIVIQRWQPA 335
MSEVEETLER+K+Q GVEGYVIC +GQVLRR P+M+Q AEIYA+ M L+ KARGVVRD+NPK EL+Y+R+RAKRHEVLVAFD +FL IVIQRW PA
Sbjct: 1 MSEVEETLERVKIQAGVEGYVICSKQGQVLRRLPSMTQAQAEIYADFMSQLSRKARGVVRDLNPKNELRYLRLRAKRHEVLVAFDQEFLVIVIQRWTPA 99
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: A0A7S3H6W3_9STRA (Dynein light chain roadblock n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6W3_9STRA) HSP 1 Score: 142 bits (358), Expect = 4.360e-41 Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 3
Query: 39 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFDHDFLAIVIQRWQPA 335
MSEVEET+ERIKVQ GVEGYVIC+ +GQVLRRFPTMS E AE YA M L +ARGVVRD++PK EL Y+R+RAKRHE++VA+D F+ IVIQRW PA
Sbjct: 1 MSEVEETIERIKVQSGVEGYVICNKQGQVLRRFPTMSLEDAERYATTMISLTTQARGVVRDLDPKNELSYLRVRAKRHEIMVAYDVQFIVIVIQRWTPA 99
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: A0A812SWU6_SYMMI (DYNLRB1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SWU6_SYMMI) HSP 1 Score: 132 bits (332), Expect = 1.490e-37 Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 3
Query: 42 SEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAF 290
SEVEET+ERIKVQPGVEGYVIC+ +GQVLRRFPTM+QETAE Y+EAM L+ +AR VVRD+NPK ELKY+R+RAKRHE++VAF
Sbjct: 1 SEVEETIERIKVQPGVEGYVICNKQGQVLRRFPTMTQETAEQYSEAMMSLSSQARSVVRDLNPKNELKYLRVRAKRHEIMVAF 83
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: A0A7S1XSI3_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSI3_9STRA) HSP 1 Score: 129 bits (323), Expect = 6.090e-36 Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 3
Query: 39 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFDHDFLAIVIQRWQPA 335
MS+VEETLERIK++PGV GYVIC+ +G VLRRFP+M+ E A+ YA AM+ LA KA GVVRD+NP L+Y+RIR KR EV+VA D FL IVIQRW PA
Sbjct: 1 MSDVEETLERIKMKPGVIGYVICNSDGTVLRRFPSMTPEQAQQYAAAMQKLAAKAGGVVRDMNPTDALEYLRIRCKRQEVVVARDDRFLVIVIQRWMPA 99
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: A0A7S2F8W6_9STRA (Dynein light chain roadblock n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8W6_9STRA) HSP 1 Score: 129 bits (323), Expect = 7.510e-36 Identity = 65/101 (64.36%), Postives = 82/101 (81.19%), Query Frame = 3
Query: 39 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQE--TAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFDHDFLAIVIQRWQPA 335
MSEVEETLERIK + GVEGYVIC+ G VLRR+P ++ A +YAE+MR LA KAR VVRD++P+ EL+Y+RIRAK HEV+VAFD +FL +VIQ+W+PA
Sbjct: 6 MSEVEETLERIKEKEGVEGYVICNRHGDVLRRYPNEPKDFQDAAVYAESMRILAWKARSVVRDLDPENELQYLRIRAKTHEVIVAFDLEFLVVVIQKWEPA 106
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Match: A0A7S0SZ17_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZ17_9STRA) HSP 1 Score: 127 bits (318), Expect = 5.000e-35 Identity = 60/99 (60.61%), Postives = 78/99 (78.79%), Query Frame = 3
Query: 39 MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHLALKARGVVRDVNPKGELKYMRIRAKRHEVLVAFDHDFLAIVIQRWQPA 335
MSEVE T+ERIK GVEGYVIC+ GQVLRRFPTMS + A+ YA M L +ARGV+RD++PK +LKY+R+R+K+HE++VAFD F+ I++QRW A
Sbjct: 7 MSEVEATIERIKRLNGVEGYVICNQVGQVLRRFPTMSPDVADEYATKMLSLTTQARGVIRDLSPKNDLKYLRVRSKKHEIMVAFDTQFVVIILQRWSAA 105 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2022.6641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig2022.6641.1 >prot_Ecto-sp13_S_contig2022.6641.1 ID=prot_Ecto-sp13_S_contig2022.6641.1|Name=mRNA_Ecto-sp13_S_contig2022.6641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp MSEVEETLERIKVQPGVEGYVICDMEGQVLRRFPTMSQETAEIYAEAMRHback to top mRNA from alignment at Ecto-sp13_S_contig2022:7785..10298- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig2022.6641.1 ID=mRNA_Ecto-sp13_S_contig2022.6641.1|Name=mRNA_Ecto-sp13_S_contig2022.6641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2514bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2022:7785..10298- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2022:7785..10298- >mRNA_Ecto-sp13_S_contig2022.6641.1 ID=mRNA_Ecto-sp13_S_contig2022.6641.1|Name=mRNA_Ecto-sp13_S_contig2022.6641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2022:7785..10298- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |