mRNA_Ecto-sp13_S_contig2022.6640.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: D7FWL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWL5_ECTSI) HSP 1 Score: 387 bits (995), Expect = 8.750e-134 Identity = 219/270 (81.11%), Postives = 225/270 (83.33%), Query Frame = 1
Query: 1 MFRSASRASAARAHCGRAAANALAAAQQQRNATTAAADKLLFLRDRNVPSTLRQDPPLSLDGRIETLHLQRRRGLASAVATTLEDGGAVQELASXXXXXXXXXXXXXXXXXXXDASPKPRRRRLLRDRPAPITLTDRAASHLISLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
MFRSASRASAARAHCGRAAANALAA QQQRNATTAA DKLLF R R+VPSTLRQ+PPLSL GRIETL + RG ASAVATTLEDGGAVQELAS DASPKPRRRRLLRDRPAPITLTDRAASHL+SLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVR GR QTG RE+GEGER+G NGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV
Sbjct: 1 MFRSASRASAARAHCGRAAANALAAGQQQRNATTAAVDKLLFCRGRSVPSTLRQEPPLSLGGRIETLP-RAIRGFASAVATTLEDGGAVQELASAAAAEATRKEEVRPQQEA-DASPKPRRRRLLRDRPAPITLTDRAASHLVSLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRGGRPQTGQREHGEGEREGAXXXXXXXXXXXGNGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 268
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: A0A836C8P3_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P3_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.260e-41 Identity = 77/134 (57.46%), Postives = 83/134 (61.94%), Query Frame = 1
Query: 409 RAASHLISLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
RAA + L+ KPGKVGVRLGVKRRGCNG SYTL YADEKP DEEV + GV++FVDP+AT YI GT MDWEETELSSEFTF NPNAKG CGCGESFNV
Sbjct: 7 RAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEK----------------------------------GVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 106
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: A0A7S2XY71_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY71_9STRA) HSP 1 Score: 137 bits (346), Expect = 5.710e-37 Identity = 70/148 (47.30%), Postives = 88/148 (59.46%), Query Frame = 1
Query: 367 RLLRDRPAPITLTDRAASHLISLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
R+ R P PI +T++AA + L++ + K+G+RLGVKRRGCNG+SYT+ Y DE PK DEEV GV++FV+PMA ++ GT MD+EETELSSEFTF NPNAKG CGCGESFN
Sbjct: 50 RMKRAMPPPIKITEKAAERIKELLSGQDDKIGIRLGVKRRGCNGLSYTMNYVDEAPKKDEEV----------------------------------QDHGVRVFVEPMALFHVVGTTMDFEETELSSEFTFKNPNAKGSCGCGESFNT 163
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: A0A7S2XT99_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XT99_9STRA) HSP 1 Score: 135 bits (341), Expect = 6.250e-36 Identity = 73/157 (46.50%), Postives = 97/157 (61.78%), Query Frame = 1
Query: 346 SPKPRRRRLLRDRPAPITLTDRAASHLISLVA--NKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
+PK R +R R + PI LT+R A+ + ++++ N G +G+RLGVKRRGCNG+SYTL YA+EKP+ DEE+ GV++F++PMA + GTVMD+EETEL+SEFTF NPN+KGECGCGESFNV
Sbjct: 64 APKKRLKRHGRRKLNPIILTERGANRIKAILSGDNAKGAIGIRLGVKRRGCNGLSYTLNYANEKPEQDEEMEAH----------------------------------GVRVFIEPMALFSVVGTVMDYEETELASEFTFQNPNSKGECGCGESFNV 186
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: A0A4D9CY95_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY95_9STRA) HSP 1 Score: 135 bits (340), Expect = 6.410e-36 Identity = 72/146 (49.32%), Postives = 89/146 (60.96%), Query Frame = 1
Query: 376 RDRPAPITLTDRAASHLISLVANK-PGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
R R AP+ LT+RA S + L+A+K P +GVRLG KRRGCNG+SYT+ YA+ +PK DEEV V GV +FV+P A +++ GT MD+EETELS EFTF NPNAKG+CGCGESFNV
Sbjct: 64 RPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQV----------------------------------GGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 175
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: A0A1E7EVJ1_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVJ1_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.270e-35 Identity = 75/155 (48.39%), Postives = 94/155 (60.65%), Query Frame = 1
Query: 352 KPRRRRLLRDRPAPITLTDRAASHLISLVA--NKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
+PRRRR L+ + PI +T+RAA + ++ N G +G+RLGVKRRGCNG+SYTL YA EKP+ D E+ + GV +FV+PMA + GTVMDWEE+ELSSEFTFTNPN+KGECGCGESF V
Sbjct: 80 QPRRRRTLKTKD-PIVVTERAAIRIKEILQGDNAQGSIGIRLGVKRRGCNGLSYTLNYAFEKPEKDLEM----------------------------------DSSGVTVFVEPMALFSVVGTVMDWEESELSSEFTFTNPNSKGECGCGESFTV 199
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: H3HBE5_PHYRM (Fe-S_biosyn domain-containing protein n=33 Tax=Peronosporaceae TaxID=4777 RepID=H3HBE5_PHYRM) HSP 1 Score: 133 bits (335), Expect = 1.520e-35 Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = 1
Query: 343 ASPKPRRRRLLRDRPAPITLTDRAASHLISLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
A+P RRR LR+ P P+ LTD AA+ + L+ANKP +G+RLGVK RGCNG+SYT+ YAD+K K +EEV +G+++FV+P A ++ GT MD++ T +SSEF F NPNAKG CGCGESFNV
Sbjct: 27 ATPPTRRR--LRELPPPLNLTDAAAARIKELLANKPDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVSK----------------------------------NGIRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 146
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: A0A484DVJ7_BRELC (Fe-S_biosyn domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVJ7_BRELC) HSP 1 Score: 133 bits (334), Expect = 2.020e-35 Identity = 68/151 (45.03%), Postives = 90/151 (59.60%), Query Frame = 1
Query: 358 RRRRLLRDRPAPITLTDRAASHLISLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
R RR LR+ P P+ +TD AAS + L+ANKP +G+RLGV+ RGCNG+SYT+ YAD+K +EEV+ +GV++FV+P A ++ GT MD++ T +SSEFTF NPNAK CGCGESFNV
Sbjct: 28 RARRHLRELPPPLNMTDAAASRIRELLANKPDAIGIRLGVRARGCNGLSYTMNYADKKENMEEEVIK----------------------------------NGVRVFVEPKALFHVVGTTMDFQVTPVSSEFTFENPNAKSSCGCGESFNV 144
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: W7U7I1_9STRA (Iron-sulfur protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7I1_9STRA) HSP 1 Score: 135 bits (340), Expect = 7.360e-35 Identity = 72/146 (49.32%), Postives = 89/146 (60.96%), Query Frame = 1
Query: 376 RDRPAPITLTDRAASHLISLVANK-PGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
R R AP+ LT+RA S + L+A+K P +GVRLG KRRGCNG+SYT+ YA+ +PK DEEV V GV +FV+P A +++ GT MD+EETELS EFTF NPNAKG+CGCGESFNV
Sbjct: 154 RPRAAPLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQV----------------------------------GGVTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Match: A0A0P1B349_PLAHL (Iron-sulfur protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B349_PLAHL) HSP 1 Score: 130 bits (328), Expect = 1.750e-34 Identity = 68/152 (44.74%), Postives = 89/152 (58.55%), Query Frame = 1
Query: 355 PRRRRLLRDRPAPITLTDRAASHLISLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVVRDGRAQTGHRENGEGERKGTAAAGGGDAAATANGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 810
P RR LR+ P P+ LTD AA+ + L+ NKP +G+RLGVK RGCNG+SYT+ YA++K +EEV N +GV++FV+P A ++ GT MD++ T +SSEF F NPNAKG CGCGESFNV
Sbjct: 30 PSTRRRLRELPPPLKLTDAAATRIKELLVNKPDAIGIRLGVKTRGCNGLSYTMNYAEKKENLEEEV----------------------------------NKNGVRVFVEPKALFHVVGTTMDFQVTPVSSEFVFENPNAKGSCGCGESFNV 147 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2022.6640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig2022.6640.1 >prot_Ecto-sp13_S_contig2022.6640.1 ID=prot_Ecto-sp13_S_contig2022.6640.1|Name=mRNA_Ecto-sp13_S_contig2022.6640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp MFRSASRASAARAHCGRAAANALAAAQQQRNATTAAADKLLFLRDRNVPSback to top mRNA from alignment at Ecto-sp13_S_contig2022:3999..6219+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig2022.6640.1 ID=mRNA_Ecto-sp13_S_contig2022.6640.1|Name=mRNA_Ecto-sp13_S_contig2022.6640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2022:3999..6219+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2022:3999..6219+ >mRNA_Ecto-sp13_S_contig2022.6640.1 ID=mRNA_Ecto-sp13_S_contig2022.6640.1|Name=mRNA_Ecto-sp13_S_contig2022.6640.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2022:3999..6219+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |