mRNA_Ecto-sp13_S_contig20217.6639.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20217.6639.1
Unique NamemRNA_Ecto-sp13_S_contig20217.6639.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: D8LGQ1_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ1_ECTSI)

HSP 1 Score: 650 bits (1677), Expect = 2.830e-231
Identity = 339/357 (94.96%), Postives = 344/357 (96.36%), Query Frame = 1
Query:    1 KVASMAIRDMPWTYRSAILMGIVQFLWCVVAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGGS-----EDVFAPQNSCVCNGTKISDGECEFSGLGLPLMIVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLRYVPCATTLLAWINKAASYVLAYTVAFIGIYGLSFNEADGRVREMFQRRAVTTLANDVVVEVGLRLLALSATVVYVLVTGVMMFGAFMRVGGPAIFDDE-AAAGDSKDGGDSVMDSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 1053
            KVASMAIRDMPWTYRSAILMGIVQFLWC+VAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGG      EDVFA QNSCVCNGTKISDGECEFSGLGLPLM+VWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLRYVPCATTLLAW+NKAASYVLAYTVAFIGIYGLSFNEA GRVREMFQRRAVTTLAND+VVEVGLRLLALSATVVY LVTGVM FGAFMRVGGPAIFDDE AAAGDSKDG  SV+DSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW
Sbjct:  208 KVASMAIRDMPWTYRSAILMGIVQFLWCMVAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGGDGGGGGEDVFAAQNSCVCNGTKISDGECEFSGLGLPLMMVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLRYVPCATTLLAWLNKAASYVLAYTVAFIGIYGLSFNEAGGRVREMFQRRAVTTLANDIVVEVGLRLLALSATVVYALVTGVMTFGAFMRVGGPAIFDDEEAAAGDSKDGDGSVVDSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 564          
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: D7FN10_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN10_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 2.920e-83
Identity = 148/352 (42.05%), Postives = 214/352 (60.80%), Query Frame = 1
Query:    1 KVASMAIRDMPWTYRSAILMGIVQFLWCVVAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGGSEDVFAPQNSCVCNGTKIS-DGECEFSGLGLPLMIVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLRYVPCATTLLAWINKAASYVLAYTVAFIGIYGLSFNEADGRVREMFQRRAVTTLANDVVVEVGLRLLALSATVVYVLVTGVMMFGAFMRVGGPAIFDDEAAAGDSKDGGDSVMDSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 1053
            KVA +A++ MPWT R+ +LM  VQ LW +++A+AA G+  +L TV   DG++++A  C D              SC+C G   S +  CE+ G GL L + WL S+ WG  VIRNVV  TV+GSVASWW++ + D++PV+GA +RAT  SFGSLCKAAAI   +    +  +R+ +   C + +L W+ + A Y+LAY++ FI IYGLSF+EA  RV E+F+RR VTT+AND+VV+VGL  +    TV ++ +  +++  A   +GG  +                         V    +F  + +AF+V+T +EV+RS FKAVFVCFVQDP+ LA  HG ++H +L  AW
Sbjct:  175 KVAGLAVKSMPWTVRAGLLMSGVQVLWVLLSAMAAGGTIASLRTVTGLDGTTYKASSCSDVMLDPPTRGMVHHLSCMCGGHVASYNSACEYEGRGLWLALFWLASLTWGADVIRNVVTATVTGSVASWWYSADRDASPVRGALYRATHGSFGSLCKAAAISTAVRLLTRTVRRLAKVGRCGSFVLGWLQRLADYILAYSICFISIYGLSFSEAGQRVSELFRRRGVTTIANDIVVDVGLTAVCAGLTVCFLCLAYLVITVAHRALGGTFLV-----------------------GVYVIFLFSPLLVAFVVATTVEVLRSSFKAVFVCFVQDPDALASNHGRQLHDDLSRAW 503          
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: D7FHM6_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM6_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 5.930e-64
Identity = 157/372 (42.20%), Postives = 206/372 (55.38%), Query Frame = 1
Query:    1 KVASMAIRDMPWTYRSAILMGIVQFLWCVVAAIAALGSFVALE-TVAAPDGSSHRAIYCLDFAD-----GGSEDVFAPQNSCVCNGTKIS-DGECEFSGLGLPLMIV---WLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLRYVPCATTLLAWINK---AASYVLAYTVAFIGIYGLSFNEADGRVREMFQRRAVTTLANDVVVEVGLRLLALSATVVY--------VLVTGVMMFGAFMRVGGPAIFDDEAAAGDSKDGGDSVMDSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 1053
            KVA++A+R MP T R A+ M  VQ +W +++A AA GSF A    V   DG+++ ++ C D        GG E       SC C G  IS D  CEFSG G P  ++   WL S+ W   V+RNVV  TV+GSVASWWF+P  D++ V+GAF+RAT SSFGSLCKAAAI  +I    +VA   LR V  A  L  ++ +   A  Y  AY + FIGIYGL F+EA  RV E+FQRR +T +AND +V VGL LL +     Y        V++TGV   G+                          +D +  + VV   +F  V +A   ST + V+RSG KAVFVCFVQDPE  A  H  +++ +L  AW
Sbjct:  281 KVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAGGSFAAFSPVVVGADGTTYSSLECQDITVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSG-GFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPG-DTSSVRGAFYRATHSSFGSLCKAAAIVAVI----RVAMFPLRLVSHALCLRCFLRRFRDAVGYASAYAICFIGIYGLGFSEALRRVHELFQRRGITMIANDGIVSVGLFLLTMGLMSTYLVVVCSSMVMLTGVQFSGS--------------------------LDGLIMFVVV---VFVFVPVAVCFSTTMSVLRSGHKAVFVCFVQDPEAFANNHS-QMYDDLSGAW 616          
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: D7FHM4_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM4_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 9.710e-58
Identity = 139/361 (38.50%), Postives = 186/361 (51.52%), Query Frame = 1
Query:    1 KVASMAIRDMPWTYRSAILMGIVQFLWCVVAAIAALGSFVALET-VAAPDGSSHRAIYCLDFAD-----GGSEDVFAPQNSCVCNGTKIS-DGECEFSGLGLPLMIV---WLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLRYVPCATTLLAWINKAASYVLAYTVAFIGIYGLSFNEADGRVREMFQRRAVTTLANDVVVEVGLRLLALSATVVYVLVTGVMMFGAFMRVGGPAIFDDEAAAGDSKDGGDSVMDSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 1053
            KVA++A+R MP T R A+ M  VQ +W +++A AA GSF A    V   DG+++ ++ C D A      GG E       SC C G  IS D  CEFS  G P  ++   WL S+ W   V+RNVV  TV+GSVASWWF+P  D+  V+GAF+RAT SSFG   +                   R+             A  Y  AY + FIGIYGL F++A  R  E+FQRR +T +AND +V  GL LL +     YV+V   M++ + +   G                      S+ F+ +    +F  V +A   ST + V+RSG KAVFVCFVQDPE LA  HG + + +L  AW
Sbjct:   84 KVAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAWGSFAAFSPMVVGADGTTYSSLECQDIAVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSS-GFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPG-DTRSVRGAFYRATHSSFGCFLR-------------------RF-----------RDAVGYASAYAICFIGIYGLDFSKALRRAHELFQRRGITMIANDGIVSAGLFLLTMGLMSTYVVVVWSMVWSSMVMSMGAQF-----------------SGSLFFFIMSVVVVFFFVPVAVCFSTTMSVLRSGRKAVFVCFVQDPEALANNHGSQTYDDLSGAW 395          
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: D7FHM5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.960e-32
Identity = 88/230 (38.26%), Postives = 128/230 (55.65%), Query Frame = 1
Query:    4 VASMAIRDMPWTYRSAILMGIVQFLWCVVAAIAALGSFVALE-TVAAPDGSSHRAIYCLDFAD-----GGSEDVFAPQNSCVCNGTKIS-DGECEFSGLGLP---LMIVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQ-----LIAAACKVAQRVLRYVPCATTLLAWIN-----KAASYVLAYTVAFIGIYGLSFNE 633
            VA++A+R MP T   A+ MG ++ +W +++A++A+GSFVA    V + DG+++  + C D        GG E       SC C G  IS D  CEFSG G     L + W+ S  WG  V+ +VV  TV+GSVASWWF+P  D+  V+GAF+RAT SSFGSLCKA   Q      +I+ + +++           +   W++      A  +   Y + FIG+YGL F+E
Sbjct:   91 VAALAVRSMPGTIYLALFMGAMRVVWFMLSALSAVGSFVAFSPVVVSADGTTYSFLGCQDIVVSSSPYGGGEATTGSGLSCHCGGEVISSDSGCEFSGGGFQRWVLGVFWVGSFIWGLDVLHDVVLATVAGSVASWWFSPG-DTNSVRGAFYRATHSSFGSLCKACPTQMADTWGVISRSVRISNSTGPNSAHVFSSRNWMSFSRNLGAVCHAYIYAICFIGMYGLDFSE 319          
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: A0A485LLB8_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLB8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.380e-20
Identity = 97/358 (27.09%), Postives = 157/358 (43.85%), Query Frame = 1
Query:    1 KVASMAIRDMPWTYRSAILMGIVQFLWCVVAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGGSEDVFAPQNSCVCNGTKISDGECEFSGLGLPLMIVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLR---YVPC-ATTLLAWINKAASYVLAYTVAFIGIYGLSFNEADGRVREMFQRRAVTTLANDVVVEVGLRLLALSATVVYVLVTGVMMFGAFMRVGGPAIFDDEAAAGDSKDGGDSVMDSVEFWSVVGPQIFGVVALAFLVSTVL---EVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 1053
            +V + A++   + +  A  + +VQ +W VV AIA +G    +         +     C    D  S  V    NS     T +S      +G  + ++   L S  WG  VI+NV+  TV+G+VA+WW           GAF RATT+SFGS+C  + I  ++     +A+  L+   +V C A  +L+ +     Y+  +   ++GIYG +F EA   V  +F  R +T + ND ++ + L  ++L++ V+          GA     G A                + +D           +F ++ LAF +   L    +V S    VFVCF +DP   A  H  E+H  +  AW
Sbjct:  180 QVGAAAVQQHYFVFPLAYALIVVQLIWIVVWAIALVGVATKVAPTNPNTNGTGFGTNCTLPKDCLSN-VCGHTNSTTIGTTCLS----PVAGGQVVVLFFMLVSFYWGITVIKNVLHTTVAGTVATWWVAGSNARGVTTGAFRRATTTSFGSVCFGSLIVAILQTLELIAKESLKQGDWVACVAQCILSCLRGIMEYINRWAFIYVGIYGYTFMEAGKHVFTLFHNRGLTAIVNDDLIGIALTFVSLASGVIC---------GAL----GLAY---------------ATLDPAHASFSGAKVVFPILGLAFGIGVTLVPLSIVDSAVATVFVCFAEDPSAFARSHP-ELHNTMVDAW 503          
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: A0A6H5K950_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K950_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.740e-17
Identity = 65/194 (33.51%), Postives = 87/194 (44.85%), Query Frame = 1
Query:  559 INKAASYVLAYTVAFIGIYGLSFNEADG---------------------RVREMFQRRAVTTLANDVVVEVGLRLLALSATVVY--------VLVTGVMMFGAFMRVGGPAIFDDEAAAGDSKDGGDSVMDSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 1053
            +  A  Y   Y + FIGIYGL F+E  G                     RV E+FQRR +T +AND +V VGL LL +     Y        V++TGV   G++                          D +  + V+   +F  V +A   ST + V+RSG  AVFVCFVQDPE LA  HG + + +L  AW
Sbjct:    4 LRPAVGYASTYAICFIGIYGLDFSEGAGAHPISRTTGSFAYQPMGSALRRVHELFQRRGITMIANDDIVAVGLFLLTMGLMSTYLVVACSSLVMLTGVQFSGSW--------------------------DGLIMFVVL---VFVFVPVAVCFSTTMSVLRSGHNAVFVCFVQDPEALANNHGSQRYDDLSEAW 168          
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: W4H7R7_9STRA (Choline transporter-like protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7R7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.240e-17
Identity = 94/357 (26.33%), Postives = 158/357 (44.26%), Query Frame = 1
Query:    1 KVASMAIRDMPWTYRSAILMGIVQFLWCVVAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGGSEDVFAPQNSCVCNGTKISDGECE--FSGLGLPLMIVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAA---AIQQLIAAACKVAQRVLRYVPC-ATTLLAWINKAASYVLAYTVAFIGIYGLSFNEADGRVREMFQRRAVTTLANDVVVEVGLRLLALSATVVYVLVTGVMMFGAFMRVGGPAIFDDEAAAGDSKDGGDSVMDSVEFWSVVGPQIFGVVALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 1053
            +VA+ A++     +  A  +  VQ  W  + AIA +G F    +     G+S     C   ++  S DV A  +    N T+++   C+    G  +      L S+ WG  V++ ++  TV+G+VA+WW   +  S    GAF RA T+SFGS+C  +   AI + + +  K A++    V C A  +L  +     Y+  +   ++G+YG  F  A   V  +FQ R ++ + ND ++   +  L+L+  ++  L+     +                 A  S DG + ++  +     VG  +             L VV S    VFVCF +DP  L+  H  E+H E+  AW
Sbjct:  175 QVAAAAVKKHWSIFPVAFALMAVQVAWVFIWAIALVGVFQKATSPVPNLGASVAGTSCSASSECES-DVCAKSS----NATRLT---CQPFIPGQAIVTYFFMLVSLYWGVNVVKYLLHTTVAGTVATWWAAGDSQSA-TGGAFRRAMTTSFGSICMGSLLVAILEALESMAKEARKKGNGVACVAECILNMLRGILEYINRWAFVYVGMYGFPFAHAGKAVYGLFQTRGLSAIVNDDLIGAAMGSLSLACGLICALLALAYTY--------------IDTAHTSFDGANLILPLMGLAFGVGVTVIP-----------LSVVSSAVATVFVCFAEDPAALSRTHP-ELHNEMVGAW 496          
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: A0A485LJK1_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJK1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.700e-17
Identity = 76/257 (29.57%), Postives = 119/257 (46.30%), Query Frame = 1
Query:  304 LCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAA---AIQQLIAAACKVAQRVLRYVPC-ATTLLAWINKAASYVLAYTVAFIGIYGLSFNEADGRVREMFQRRAVTTLANDVVVEVGLRLLALSATVVYVLVTGVMMFGAFMRVGGPAIFDDEAAAGDSKDGGDSVMDSVEFWSVVGPQIFGVVALAFLVSTV---LEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 1053
            L S  WG  V++NV+  TV+G+VASWW      S    GAF RATT+SFGS+C  +   A+ Q +    + A++   +V C A  +L+   +   YV  +   ++GIYG  F  A   V  +F  R ++ + ND ++   L L++LS  ++  ++ G++                            + +D           +F VV LAF +      L VV S    +FVCF +DP   A  H  E+H  + +AW
Sbjct:  297 LVSFYWGVTVVKNVLHVTVAGTVASWWAAGNA-SDVTAGAFRRATTTSFGSICLGSLLVAVLQALETLAREARQQGDWVACVAECILSCARRLLEYVNRWAFVYVGIYGFKFTHAGKSVFTLFNTRGLSAIVNDDLIGHCLGLVSLSCGLICAIL-GLLY---------------------------TCVDKTHTAFPDASVLFAVVGLAFGIGVSMIPLGVVDSAVATIFVCFAEDPAAFARAHP-ELHETIVAAW 523          
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Match: A0A485LKP1_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKP1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.330e-16
Identity = 96/367 (26.16%), Postives = 156/367 (42.51%), Query Frame = 1
Query:    1 KVASMAIRDMPWTYRSAILMGIVQFLWCVVAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGGSEDV--FAPQNSCVCNGTKISDGECEFSGLGLPLMIVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLCKAAAIQQLIAAACKVAQRVLR-----------YVPCATTLLAWINKAASYVLAYTVAFIGIYGLSFNEADGRVREMFQRRAVTTLANDVVVEVGLRLLALSATVVYVLVTGVMMFGAFMRVGGPAIFDDEAAAGDSKDGGDSVMDSVEFWSVVGPQIFGVVALAFLVSTVL---EVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW 1053
            +VA+ A++    T+  A  +  VQ +W  +  IA LG   ++  V            C   +D  S+     + ++S +     +S GE     LG   M+V   S  WG  VI+NV+  TV+G+VASWW   +       GAF RATT+SFGS+C  + +  ++ A   VA                ++ C   ++ WIN+       +   ++GIYG  F  A   V  +F  R ++ + ND ++   +  +ALS  ++  L+             G A                + +D        G  IF ++ LA  +   L    V+ S    VFVCF +DP   A+ H  E++  + +AW
Sbjct:  169 QVAAAAVKHNMSTFPLAFGLMAVQIVWFFLWTIALLGIIKSVTPVIPNPSGLSTGSTCKVNSDCQSDMCRKISKKSSVLTCQPLVSAGEV----LGYFFMLV---SFFWGVNVIKNVLHTTVAGTVASWWMAGDPRKATA-GAFRRATTTSFGSICLGSLLVAILQAMETVANEAKSRGDWVACVAECFLKCLRGIMEWINR-------WAFVYVGIYGFKFFHAGKSVFTLFSTRGLSAVVNDDLIGHCMGFMALSNGLICALL-------------GLAY---------------TCVDKEHTAFPGGTVIFPIIGLAVGIGVALIPLSVIDSAVATVFVCFAEDPAAFAQTHP-ELYTNMVAAW 491          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20217.6639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGQ1_ECTSI2.830e-23194.96Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FN10_ECTSI2.920e-8342.05Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FHM6_ECTSI5.930e-6442.20Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM4_ECTSI9.710e-5838.50Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM5_ECTSI4.960e-3238.26Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A485LLB8_9STRA2.380e-2027.09Choline transporter-like protein n=1 Tax=Aphanomyc... [more]
A0A6H5K950_9PHAE2.740e-1733.51Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
W4H7R7_9STRA3.240e-1726.33Choline transporter-like protein n=3 Tax=Aphanomyc... [more]
A0A485LJK1_9STRA8.700e-1729.57Choline transporter-like protein n=1 Tax=Aphanomyc... [more]
A0A485LKP1_9STRA6.330e-1626.16Choline transporter-like protein n=1 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20217contigEcto-sp13_S_contig20217:1..3109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score643.3
Seed ortholog evalue6.6e-182
Seed eggNOG ortholog2880.D8LGQ1
Model size1053
Hectar predicted targeting categorysignal anchor
Exons5
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
Cds size1041
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20217.6639.1prot_Ecto-sp13_S_contig20217.6639.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20217 1..3097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463016.314067-CDS-Ecto-sp13_S_contig20217:0..631681463016.314067-CDS-Ecto-sp13_S_contig20217:0..63Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20217 1..63 -
1681463016.32585-CDS-Ecto-sp13_S_contig20217:322..6781681463016.32585-CDS-Ecto-sp13_S_contig20217:322..678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20217 323..678 -
1681463016.3378808-CDS-Ecto-sp13_S_contig20217:1129..13111681463016.3378808-CDS-Ecto-sp13_S_contig20217:1129..1311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20217 1130..1311 -
1681463016.3533216-CDS-Ecto-sp13_S_contig20217:2181..23781681463016.3533216-CDS-Ecto-sp13_S_contig20217:2181..2378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20217 2182..2378 -
1681463016.3657963-CDS-Ecto-sp13_S_contig20217:2854..30971681463016.3657963-CDS-Ecto-sp13_S_contig20217:2854..3097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20217 2855..3097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463016.3767517-UTR-Ecto-sp13_S_contig20217:3097..31091681463016.3767517-UTR-Ecto-sp13_S_contig20217:3097..3109Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20217 3098..3109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20217.6639.1

>prot_Ecto-sp13_S_contig20217.6639.1 ID=prot_Ecto-sp13_S_contig20217.6639.1|Name=mRNA_Ecto-sp13_S_contig20217.6639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp
MAIRDMPWTYRSAILMGIVQFLWCVVAAIAALGSFVALETVAAPDGSSHR
AIYCLDFADGGSEDVFAPQNSCVCNGTKISDGECEFSGLGLPLMIVWLCS
MAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFGSLC
KAAAIQQLIAAACKVAQRVLRYVPCATTLLAWINKAASYVLAYTVAFIGI
YGLSFNEADGRVREMFQRRAVTTLANDVVVEVGLRLLALSATVVYVLVTG
VMMFGAFMRVGGPAIFDDEAAAGDSKDGGDSVMDSVEFWSVVGPQIFGVV
ALAFLVSTVLEVVRSGFKAVFVCFVQDPEVLAEKHGHEVHAELQSAW
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mRNA from alignment at Ecto-sp13_S_contig20217:1..3109-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20217.6639.1 ID=mRNA_Ecto-sp13_S_contig20217.6639.1|Name=mRNA_Ecto-sp13_S_contig20217.6639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3109bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20217:1..3109- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTCGCGTCCATGGCCATCAGGGACATGCCCTGGACCTACCGCTCGGC CATCCTGATGGGCATCGTGCAGTTCCTTTGGTGCGTGGTTGCCGCGATCG CCGCCCTGGGTTCCTTCGTCGCCCTCGAGACGGTCGCCGCCCCGGACGGC TCGTCGCACCGCGCGATCTACTGCCTCGACTTCGCGGACGGCGGCAGCGA GGACGTTTTCGCTCCCCAGAACTCGTGTGTGTGCAACGGCACCAAGATCT CTGACGTGAGTTGCGTCAGAGAGATTCCACATTTTGTGTTCTAGCTCGTT GGTTTTTTTCCAGTAAATCCATCTTTACACCCGTTCGAGATGGACTTTTT TTTTTTTTTTTTTTCGACGTTTAACGCAAGATAAGAGTCAAATATCATGA TACTGCTGTTGTTCATGTTGTTCATGTTTTNNNNNNNNNNGGTGTTCTTG CCCGTTTGTTTTTTTTCTGTAAAACCATCTTTACACCCGTTCGAGATGGA CTTCTTTTTTTTTTTTTGCCGACGTTTAACGCAAGATAAGAGTCCACGAT TGATAAGCAATAGAGAAATATCATGATACTGCTGTTGTTCATGTTGTTCA TGTTATTGTCGTCGTCCTTGATATTAATTACTGTTGTTGTTGCTGCTGCT GCTGCTGCCGCTGCTGCTGCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGC TCCTGCTGCTGCTGCTGTTCTTTGTTGACAGGGGGAGTGCGAGTTCAGTG GCCTCGGCCTCCCCCTGATGATCGTCTGGCTGTGCTCAATGGCGTGGGGC TGCGGCGTCATTCGTAACGTGGTCGCTTGCACTGTCTCCGGCTCCGTGGC CTCGTGGTGGTTCACCCCCGAAGAGGACTCGACTCCGGTTAAGGGGGCGT TCCACCGGGCTACCACCTCCTCTTTCGGGTGAGTGTTATTTTTTCCCCCT CTTGTTAACTGTCGACGTGATTTTCGTTTCGTTTGGCATGTACCAGACGG GGGCGCTTCTATGATTTTTTCTTGCCACACAGCATAGAAATTCGGTCTCA GCATACGTTTGATTCCACCGGGAAACCACCTCCTCTTTCGGGGGAGTGTT TTTCTTTGTTCCCTGTCTTCTTTAGTGACGACCTGAAGTTTGCTTCGTTT GGCGTGTACAAGATGGGGGCGCTTCTGCGTTTTTTGTTACATACACGACA CAAGAAATCGGCCACAGCATACTGTTGATTGCACCCGGGCAACCACCTCC TCTTTCGGGCGAGCGTTTTTTTCCCTTTTGTCTATCAAGTTCGACGTGAA TTTCGTTTCGATTGGCGTGTACAAGAGGGGGGCGCTTTAATGTGTTTTTT TGCAACAACACAACACCAAAATTCGGCCATAACATGGTTTTGATTCCACT GGGCAACCACCTCCTCTTTCGGGTGAGTGTTTTTTTTGTTTTTTCCTTTT GTCTTCTTCTTTGGTGTCGACCTGACTTTCGTTTCGTTTGGCGTATTCAA GCTGGGGGCGCTTCCGTGTTCTTTCTTGCCTACACAACACGAGATCGGCC AAAGCGCACGTTAGATTCCACCCGCAACCACGTCCTCGTTTCGAGTGGGC TTTTTTTTTTCTTTCGTTATTTCTTTCTCGACTGAATATTCGGTTCGTTT GGCTTTTCAAGATGCGGGGGCGGTTTGGTGTGCTTGTCACTCCGCCGATT TTCGTTTTTTCTTTCTCAAGCGATTTAGTTGTAATACCACTCAAACTTTG TGTTTACACATGTTTTCCGTGTTAAATTCATTGTGTCGTCTGACACAGGT CGCTGTGCAAGGCAGCGGCGATCCAGCAGCTCATCGCCGCCGCCTGCAAG GTCGCGCAGCGCGTGCTCCGCTACGTGCCCTGCGCCACGACGCTCCTGGC GTGGATCAACAAGGCCGCAAGCTACGTCCTCGCCTACACGGTCGCCTTCA TCGGCATCTACGGTCTCAGCTTCAACGAAGGTGCGCTGCACTGCCTCTTT GTTGTTGTTGTTGTTGTTCGCCTTCTCGTCGGAGTCTACCGGTCTACTCT GCATTGTTTCGCCGCTTTTTTGTCGGCGATGAAGATACCGACGAGATGGT CTGTTGCCGTGTTTCGTTTGAACCTCTCTCGGTCGACTTAGGTACCGAAA CCAACCCCCTTGCCAGCATAACCTTACTGAGATACACAGGACAGCTACCC AACTGTCCTCTTGAGCCTGTTTCCCACAGGGGGAATATCGCTGTGTGCCG CTCGGGAAATGGTGCAAACATAGGTAGCCACCGCTGACGCTACGGATTAT TTGCTAATCTATCCTAGACTCGCTCCTTAAGATAAGACGTGGATTCGTTA TGTCACGTGAAGAAAATAGCAATAAACTCAATAAACCGAACCACATCCCA CGACTCCCCGCCCCCCGTCTACGAAAAACAGCCGATGGCCGAGTCCGTGA GATGTTCCAGCGCCGCGCCGTGACCACCCTGGCCAACGACGTCGTGGTCG AGGTGGGGCTCCGCCTTCTCGCCCTGTCCGCCACGGTCGTTTACGTCCTC GTGACCGGCGTCATGATGTTCGGCGCCTTCATGCGCGTCGGCGGCCCCGC CATCTTCGACGACGAAGCAGCGGCGGGAGACAGCAAGGACGGCGGTGATT CGGTGATGGACTCGGTGGAGTTCTGGTCGGTTGTGGGACCCCAGATCTTC GGCGTGGTGGCCCTGGCATTCCTGGTGTCGACGGTGCTGGAGGTGGTGCG GTCCGGGTTCAAGGCCGTGTTCGTCTGCTTTGTACAGGTGTGTGTGTGTG TGTCTTCCTTGTTAGCATCGACCGCGCTAACCGGCTGACAAATGGAAGAA CGTTAGTCTCAGTGCGGTTGAAAAGGGTGTGTGTGTGTGTGTGTTTTTTT TCTTGTAGCATCGACCGCGCTAGCCCGCTGACAAATAAAAAAACGGTTGC TTTTTTTTATTTTTGTCGGCAAAAGTCCGGCAGCGGTGTCAAATGTCGGA TGCGATGATCCCTTTTTTTTTTTTGCGTTTTCTCGACTTTGCGCAGGACC CCGAGGTGCTCGCCGAGAAGCACGGACACGAGGTTCACGCCGAGCTCCAG TCGGCGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20217:1..3109-

>mRNA_Ecto-sp13_S_contig20217.6639.1 ID=mRNA_Ecto-sp13_S_contig20217.6639.1|Name=mRNA_Ecto-sp13_S_contig20217.6639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20217:1..3109- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATCAGGGACATGCCCTGGACCTACCGCTCGGCCATCCTGATGGG
CATCGTGCAGTTCCTTTGGTGCGTGGTTGCCGCGATCGCCGCCCTGGGTT
CCTTCGTCGCCCTCGAGACGGTCGCCGCCCCGGACGGCTCGTCGCACCGC
GCGATCTACTGCCTCGACTTCGCGGACGGCGGCAGCGAGGACGTTTTCGC
TCCCCAGAACTCGTGTGTGTGCAACGGCACCAAGATCTCTGACGGGGAGT
GCGAGTTCAGTGGCCTCGGCCTCCCCCTGATGATCGTCTGGCTGTGCTCA
ATGGCGTGGGGCTGCGGCGTCATTCGTAACGTGGTCGCTTGCACTGTCTC
CGGCTCCGTGGCCTCGTGGTGGTTCACCCCCGAAGAGGACTCGACTCCGG
TTAAGGGGGCGTTCCACCGGGCTACCACCTCCTCTTTCGGGTCGCTGTGC
AAGGCAGCGGCGATCCAGCAGCTCATCGCCGCCGCCTGCAAGGTCGCGCA
GCGCGTGCTCCGCTACGTGCCCTGCGCCACGACGCTCCTGGCGTGGATCA
ACAAGGCCGCAAGCTACGTCCTCGCCTACACGGTCGCCTTCATCGGCATC
TACGGTCTCAGCTTCAACGAAGCCGATGGCCGAGTCCGTGAGATGTTCCA
GCGCCGCGCCGTGACCACCCTGGCCAACGACGTCGTGGTCGAGGTGGGGC
TCCGCCTTCTCGCCCTGTCCGCCACGGTCGTTTACGTCCTCGTGACCGGC
GTCATGATGTTCGGCGCCTTCATGCGCGTCGGCGGCCCCGCCATCTTCGA
CGACGAAGCAGCGGCGGGAGACAGCAAGGACGGCGGTGATTCGGTGATGG
ACTCGGTGGAGTTCTGGTCGGTTGTGGGACCCCAGATCTTCGGCGTGGTG
GCCCTGGCATTCCTGGTGTCGACGGTGCTGGAGGTGGTGCGGTCCGGGTT
CAAGGCCGTGTTCGTCTGCTTTGTACAGGACCCCGAGGTGCTCGCCGAGA
AGCACGGACACGAGGTTCACGCCGAGCTCCAGTCGGCGTGG
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