mRNA_Ecto-sp13_S_contig20215.6638.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20215.6638.1
Unique NamemRNA_Ecto-sp13_S_contig20215.6638.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.450e-34
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ
Sbjct: 1984 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 2045          
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: A0A835ZH49_9STRA (BEACH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH49_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.480e-25
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            +VS+NLHHWIDLIFG+KQ+G AA  AHNVFYYLTY GA+DL  I+D+ LRRATELQIAHFGQ
Sbjct:  282 HVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQ 343          
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: A0A7S2WRZ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRZ9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 8.680e-24
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            +VS  LHHWIDLIFGY+QRG AA +AHNVFYYLTY+G VD++ I+D  +RRATELQIAHFGQ
Sbjct:  695 HVSSQLHHWIDLIFGYQQRGQAAVQAHNVFYYLTYAGCVDISQIEDPVMRRATELQIAHFGQ 756          
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: A0A7S0NBQ1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0NBQ1_9CRYP)

HSP 1 Score: 93.6 bits (231), Expect = 2.860e-23
Identity = 45/62 (72.58%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            +VS NLHHWIDLIFG KQRGPAAE+A NVFYYLTY G  DL  I D GLRR+ E QI  FGQ
Sbjct:   15 FVSANLHHWIDLIFGCKQRGPAAEEAVNVFYYLTYEGGADLDAIADPGLRRSAEAQIRSFGQ 76          
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: A0A482SZ90_9ARCH (DUF4704 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZ90_9ARCH)

HSP 1 Score: 99.8 bits (247), Expect = 5.640e-23
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            YV+++LH WIDLIFGYKQRGP A +A NVFYYLTY GAVD   I+DE LRRATELQIAHFGQ
Sbjct: 1939 YVTEHLHEWIDLIFGYKQRGPDAVEAKNVFYYLTYYGAVDHYMIEDETLRRATELQIAHFGQ 2000          
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: A0A812SF29_SYMMI (LvsC protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SF29_SYMMI)

HSP 1 Score: 96.3 bits (238), Expect = 1.080e-22
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            YVS +LH WIDLIFGYKQRGPAA +AHNVFYYLTY GAV+   I DE  R+A +LQIAHFGQ
Sbjct:  217 YVSAHLHEWIDLIFGYKQRGPAAVEAHNVFYYLTYYGAVNRDIIVDEATRKAIDLQIAHFGQ 278          
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: A0A7S3MHR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHR3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.480e-22
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            YV+ +LH WIDLIFGYKQRGP A +A+NVFYYLTY G+V+   I+DE LRRATELQIAHFGQ
Sbjct:  137 YVTTHLHEWIDLIFGYKQRGPDAVEANNVFYYLTYYGSVNHYMIKDESLRRATELQIAHFGQ 198          
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: M2Y8Y9_GALSU (WD-40 repeat family protein / beige-related protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y8Y9_GALSU)

HSP 1 Score: 97.4 bits (241), Expect = 3.660e-22
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            YVS NLHHWIDLIFG++QRGPAA +A NVF+YLTY GA+DL +IQD  LR + E QIAHFGQ
Sbjct: 2756 YVSLNLHHWIDLIFGFRQRGPAAVEACNVFFYLTYEGAIDLESIQDMELRESMETQIAHFGQ 2817          
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: A0A7R9W3F5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3F5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.270e-22
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            YVS NL+HW+DLIFGYKQRGP A  AHN+F+YL+Y G+VDL  I DE  R+ATE  I +FGQ
Sbjct:    7 YVSANLNHWVDLIFGYKQRGPEAAAAHNIFHYLSYEGSVDLDKITDEVDRKATESHIQNFGQ 68          
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Match: A0A1Y5IG54_OSTTA (Lysosomal trafficking regulator LYST and related beach and WD40 repeat protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IG54_OSTTA)

HSP 1 Score: 96.7 bits (239), Expect = 6.810e-22
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQ 186
            +VS+NLHHWIDLIFGYKQRG AAE AHNVFYY+TY GAVD+ +IQD  L +AT+ QI+ FGQ
Sbjct: 1992 HVSKNLHHWIDLIFGYKQRGKAAESAHNVFYYMTYEGAVDVESIQDPVLLKATQDQISCFGQ 2053          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20215.6638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KST8_9PHAE3.450e-34100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZH49_9STRA1.480e-2577.42BEACH domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S2WRZ9_9STRA8.680e-2474.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0NBQ1_9CRYP2.860e-2372.58Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A482SZ90_9ARCH5.640e-2377.42DUF4704 domain-containing protein n=1 Tax=archaeon... [more]
A0A812SF29_SYMMI1.080e-2274.19LvsC protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S3MHR3_9STRA2.480e-2274.19Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
M2Y8Y9_GALSU3.660e-2272.58WD-40 repeat family protein / beige-related protei... [more]
A0A7R9W3F5_9STRA6.270e-2266.13Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A1Y5IG54_OSTTA6.810e-2272.58Lysosomal trafficking regulator LYST and related b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20215contigEcto-sp13_S_contig20215:2614..2799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score131.7
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog2880.D8LFY8
Model size186
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
Cds size186
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463016.2837906-CDS-Ecto-sp13_S_contig20215:2613..27991681463016.2837906-CDS-Ecto-sp13_S_contig20215:2613..2799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20215 2614..2799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20215.6638.1prot_Ecto-sp13_S_contig20215.6638.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20215 2614..2799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20215.6638.1

>prot_Ecto-sp13_S_contig20215.6638.1 ID=prot_Ecto-sp13_S_contig20215.6638.1|Name=mRNA_Ecto-sp13_S_contig20215.6638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
YVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLR
RATELQIAHFGQ
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mRNA from alignment at Ecto-sp13_S_contig20215:2614..2799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20215.6638.1 ID=mRNA_Ecto-sp13_S_contig20215.6638.1|Name=mRNA_Ecto-sp13_S_contig20215.6638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20215:2614..2799+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGTGTCCCAGAACCTTCACCACTGGATCGACCTCATCTTCGGGTACAA GCAGAGGGGGCCCGCGGCTGAGAAGGCGCACAACGTGTTCTACTACCTCA CATACTCCGGGGCGGTCGACCTCGCCAACATCCAGGACGAGGGGCTGCGG CGGGCCACGGAGCTGCAGATCGCTCATTTCGGCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20215:2614..2799+

>mRNA_Ecto-sp13_S_contig20215.6638.1 ID=mRNA_Ecto-sp13_S_contig20215.6638.1|Name=mRNA_Ecto-sp13_S_contig20215.6638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20215:2614..2799+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGTGTCCCAGAACCTTCACCACTGGATCGACCTCATCTTCGGGTACAA
GCAGAGGGGGCCCGCGGCTGAGAAGGCGCACAACGTGTTCTACTACCTCA
CATACTCCGGGGCGGTCGACCTCGCCAACATCCAGGACGAGGGGCTGCGG
CGGGCCACGGAGCTGCAGATCGCTCATTTCGGCCAG
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