mRNA_Ecto-sp13_S_contig202.6630.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig202.6630.1
Unique NamemRNA_Ecto-sp13_S_contig202.6630.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig202.6630.1 vs. uniprot
Match: D8LLH2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH2_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 3.340e-55
Identity = 107/113 (94.69%), Postives = 110/113 (97.35%), Query Frame = 1 
Query:  574 MAGAGSATDDSCGEEEERAPFSRTPKAPLSSSTRLALAEKTLAEVTAQRDDALELLESSRQENARLTAELDRARSYKALYAAAHHEHQGMKASLAASTQICMGQQKLIQMLQQ 912
            MAG G+ATDDSCGEEEERAPFSRTPKAPLSSSTRL+LAEK LAEVTAQRDDALELLE SRQENA+LTAELDRARSYKALYAAAHHEHQGMKASLAASTQICMGQQKLIQMLQQ
Sbjct:    1 MAGDGAATDDSCGEEEERAPFSRTPKAPLSSSTRLSLAEKALAEVTAQRDDALELLELSRQENAKLTAELDRARSYKALYAAAHHEHQGMKASLAASTQICMGQQKLIQMLQQ 113
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BLAST of mRNA_Ecto-sp13_S_contig202.6630.1 vs. uniprot
Match: D8LLH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH1_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.840e-15
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:  334 MKAKGSRRRVERELLAMRDEAQQQASGGTYRSSSHRDRGASRKHQ 468
            MKAKGSRRRVERELLAMRDEAQQQASGG YRSSSHRDRGASRK Q
Sbjct:    1 MKAKGSRRRVERELLAMRDEAQQQASGGAYRSSSHRDRGASRKQQ 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig202.6630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLH2_ECTSI3.340e-5594.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LLH1_ECTSI2.840e-1595.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig202contigEcto-sp13_S_contig202:16131..21609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size996
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionRiboflavin synthase, putative
Ec32 orthologEc-00_004590.1
Cds size663
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig202.6630.1prot_Ecto-sp13_S_contig202.6630.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig202 16464..21609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463015.5154412-UTR-Ecto-sp13_S_contig202:16130..164631681463015.5154412-UTR-Ecto-sp13_S_contig202:16130..16463Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig202 16131..16463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463015.5257041-CDS-Ecto-sp13_S_contig202:16463..165991681463015.5257041-CDS-Ecto-sp13_S_contig202:16463..16599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 16464..16599 +
1681463015.5360563-CDS-Ecto-sp13_S_contig202:19099..191701681463015.5360563-CDS-Ecto-sp13_S_contig202:19099..19170Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 19100..19170 +
1681463015.5462127-CDS-Ecto-sp13_S_contig202:19970..200401681463015.5462127-CDS-Ecto-sp13_S_contig202:19970..20040Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 19971..20040 +
1681463015.556056-CDS-Ecto-sp13_S_contig202:20722..209401681463015.556056-CDS-Ecto-sp13_S_contig202:20722..20940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 20723..20940 +
1681463015.566453-CDS-Ecto-sp13_S_contig202:21441..216091681463015.566453-CDS-Ecto-sp13_S_contig202:21441..21609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 21442..21609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig202.6630.1

>prot_Ecto-sp13_S_contig202.6630.1 ID=prot_Ecto-sp13_S_contig202.6630.1|Name=mRNA_Ecto-sp13_S_contig202.6630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MKAKGSRRRVERELLAMRDEAQQQASGGTYRSSSHRDRGASRKHQGTDGG
SADGWRYSEDTASQLSNTEGRGGGGRSAGSMAGAGSATDDSCGEEEERAP
FSRTPKAPLSSSTRLALAEKTLAEVTAQRDDALELLESSRQENARLTAEL
DRARSYKALYAAAHHEHQGMKASLAASTQICMGQQKLIQMLQQTSSAPPP
ALDPEDFLASVGGGGGRPPPP
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mRNA from alignment at Ecto-sp13_S_contig202:16131..21609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig202.6630.1 ID=mRNA_Ecto-sp13_S_contig202.6630.1|Name=mRNA_Ecto-sp13_S_contig202.6630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig202:16131..21609+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCGGCTCTTGCCTCACCACGCTCGAAGTCGCCTTCAACTGCAGCCTGA
CAGCCCCTTACGCAGCAGTCACACAAAGGCGGGAAGGAGACGGAGCGTAG
AGGGTAGATATCCTTTGCGCGGTTTTGTTTAGCACACCAGAGAGAAGAGA
AAGAGAGAGATAGCGAGCGGGAAGAGAGCGGCGCATCTTTTCGAAATTAT
GTCGATCTATGTATAGGAGCAAGCTGTGTTGGTTTTGGGTGCGCGATCAG
CGGTTGCTCGGTGGTGAACAGGGCAGCGGCAGGGGCAGCAGCGGCAGGGG
CTTTGCCGGGGTGGCTGCGCACGTGGTGGTGCCATGAAGGCGAAGGGCTC
GCGTCGGCGCGTGGAGCGCGAGCTCCTGGCGATGCGAGACGAGGCTCAGC
AACAGGCGAGCGGGGGCACGTATCGCAGCAGCAGTCATCGGGATCGGGGA
GCGTCGCGAAAGCACCAAGGTGGGCTTTTTGTGCGCCAAAGGGAGAAATA
GAGAGCCAGTAGATGGATGGTACAATCGTTGAAAGCGACAGACTACAGAC
CGCATGTTTTTTTCCGTCTAGCGGAGGCCGACAATGAAAGCAGCGCGTGC
CTCCGCGTGCCGTCACGACGGAAGATACCTCAGGTGCTCACAAGCGGTGG
CTGCGCGTGGTCTCGATCCAGTCCCAAAAGATGGAATATTTTCGGACGCT
TGCCTGTGTGTGTGTTCTGCATTTTGGGTACGCGTGGCCGCGCTGTGTAT
CATGTCTCTACACAGCGGATGCAAACAGCAATGCAGCGTGTCCCCCAAAT
CTTGGGCCTAGCACAGAACTATGTGGTGAGTTTGGCCATGTCGTTGCAGG
TGCCTGTTAGGCGTTAAGCTCGCGGGAGTTCGGATTTGGATTATCAACGG
GACACCTCCCTCATTTGGGCACGCCCATCTTCTATTTCAAACATTTTAAT
ATTTCCACGCCTTTCGGCACTCGCAGCATTTTGCAACCCTACCCAGAGCC
ACCGGTGACGAACGGTCATGCAGCTAAGCAGCGCGACCAGTTTATGGCCT
AGGGGGCTTGAGTCATGGGGTTGCTCGTAGAGCGAAGGCATGTCTGCTGC
ATGCGTCGGTCAACGTCTCGCAAGGGATGGATGGGGTAGACTGCAGTCGA
CGTGTCTGTTGCAAATGATACCCATTGCAGCAAATCTAACTATTTGAGAC
CTTTAGGTGACAATGAAACACCGCCGAGTTAACATGCGTGTACATATGTA
TGCAGTTCCGTCCCTTCCACGGAAGTATTAACGAAAGTTAAAGTTTGTCT
TTAGGGTCTAGAGGTTCATTTATACCTCCCGAGGTACGGTATCTACGTTT
TCAATCAAACTTTCGCCCCACGAACATCTTCTGTTGAACGGAGGCATGGC
ACATAACTGGCGAGGACGAGGTCATTTTCTTTTTTTTTTACTTTTAATAA
TCAGAGGTAGATAAGAATTCGTAGTAGCCAGTGACTTGCTCATCGAAGTA
TATGGATTCCACGAGAGTTCATCAACCGAGCTGCTTAAAGAGGTTCTATG
CCAATCCGAAAAATAGGACCCTTTCGGCATGCCCACGTCTTCAGGAGTAC
CCTACCGCATCTGCCGCTATGGTAAGGTGAGAATTCGCATGAAAATCGGT
ACATTATCCACATGAAGCCCATAAACCTGGAGTTTTCGCGTTGATTTTCC
CACAAAGCAGGTTGCAAGAAACGAAACGGATCGCCGCGGCCGATTGGTTT
TCAAACAACTCACCTCTTTGGCGTTTGTTATGCGTCCAACAATCGGCAAG
AACAACAGATATATTCTTGGCGGGGGTTCTCCAGGGGAGTCACTCACTAA
TTGCACACATTTGTACGCAGCAGTCGGTACCATAGACTAGTCATGATATG
TACCATTGTTTTTTGAAGTTTCACCGGTTCGACAAGTTACTCGGCTTGTT
GCTTAGTCCTCCATCTAGTGCGTGCGCGTGCGTTGAATTATTCATTTGCA
GCAAGTGGAGATTGAGACACCTCCAACTGCGTCATTCGTTTGCATACTCG
GGTGACAGATCGTAGTGGTTCGGACAATTTGTGGCTGTACGCGACTCGAT
GGGTGCGTGTGATTTGCTGGACAATCTATTTGGTTTTTGCTCGTCGAGGC
AGACTACGTGCAATCCGACTCTTTGACCAGCGCATCTCTGGACTCCAGTT
TCCACTACAACGTATTTTTAAACAGAAAGAGGTATCATGTACAAATAAAC
GATGCGCGTGGTGTGTTCTTTTTCAGAAAGTTCTTTGACGAAGAAGACAA
AAAAGTGGTTTTGGACGGACGGAGTTCGTGATGAGTAAAAGAAAAAGAGG
GCACGAAAGCCCTATATAGTCAGAGTCCGGTACCGCCATTCGCCTGCTGT
GACAAGTCTCTCTAAAAGCGGCACCGTGAAGAGGCAGAGATGGCTTCAAT
CCTCCAAGACCGACTGTCAAAGCTTGCCACAACCCAATTCGGTGCGGACG
GAGCCCGATACATGTACGAGATGTTTGCAGAACCACGTATTTGGTGTGGC
ACACGGTCTGGGGGGAGGTGGCAAACCTCCGCCTCTGACGGTGTTATCGA
AGATGGGTTGTACCACGTACGTACGTGCGAAATGGCAGTGCGTTTTACCA
GCACTATTTTCGCAGGCATCAATGCTTTGTCCGCGACAAAATCGGAGGGT
TGGATTGGACCGGACTCGACGCATTTTTAGCTTTTTAGCGTGTGTGGGGT
CTTAGGTTCACCAAGAACAGCAGTGGTTGAGGCGGTGTGTGGTCTCGCCT
TAGGCTAACTAGTGTGTTGAGCTCATCCAAAGCAGGAAATGCCTCCTCGC
AGCCGCCGACTACGCTCGTGTGTCTATCTTAACGTTCTTCCTCTGATCAG
TAGCACCGCGTCTCTGTTTTCTTCCGTTTTTTTTCTGTGGTCTGCGGTTT
TCGGCGACTCGTCCAGAAGGCACGGATGGCGGATCGGCGGACGGTTGGCG
GTACAGCGAGGACACAGCGAGTCAGCTGAGCAACACTGAGGTCAGAAATG
TGCTTGTACGAACTACATCACAGATCTCCACTCAGAATCTGATTCCCCCC
GATGTCAATGTGGGTACACGGCGGTACGGTGCACACGTGGTGAATAAATA
TATGCTTCTCTTCCGCTGGCACATGTATGGCCCGGTTTGTTGCTGATGTG
TGCATGGGTTGTTTTTAAATGCGGAGCGATGCTTCAACGGCAGCAGTATT
GGTCGCATGCATGTTTCGACAATCAATATCGAACAGAGATAATGGTTGTG
GGTTGTGTTGGGGGGGGGGGGGGTCGTAAAATGCTAGACCACGGTCCCCG
CAGCGAGGGACTCTCAAACCTAGTTTTTTTTCCCTCCCGTCAAGGATGTG
ACTGCTGTATGCGTATGCGATGCACACATAATCCGCATTCCGACGCGGAG
GAGGAGCCAACCCAAATCTCGTCTAAACCACAGGGCTCTTCGTTGAATGG
AATCGGCTGGGCGGGCACAAGTTCCTCTTTTTCTTGTACCGGGGTAGGAA
GCCCGTTGTTTCTTCTTGTTTGTGGGTGTAGACCCGGCGTTCACGCTTTT
CGCTCAATAAGCAACGAAGATAACAAGGTGGTGTTCGTTGTATTTTATTT
TGTTGACGCACCCGCTCGCATGCATGTTGAGACTCTCTTCGTTGCAGTTC
AACACCGGTCTCGATCGATTTGCGCACAAAGCTTCGTCCAATCCACTCCA
ATCTAGGCTCCTGATTGAAGTGAAGGCTTGATTTGTTGTTCTTTCCACCC
TGTTGTATTAAAAAGAAAAACAATTTGCTGTTTTTCGCAGGGCCGCGGCG
GCGGTGGGCGATCAGCTGGGTCTATGGCGGGGGCTGGTTCAGCGACGGAC
GATTCTTGCGGCAAGTCATGTTCTCGTGTTGTCCTATGTACAACGTTGCG
AGGACCAGAAGGACCGAAGGACTGCTGTACCTTGCCTTCGACCCGAGGCC
CAGTTTTTTCTAGCATTGTTGTGGGTAACGTGTGTTTGGTCGGCGCTGGA
TAATGTCACTGCAAATCATGTTTGACTGCGACTCCGACGTCGTCGATTGG
TACGGGGCGTTGGACGCTCCGCGTTTGTCGAAGACATAGTGGCGTGTATG
CCGTTGTTGGGAGGGTTTTGAGAGCGCTGCTCCTTTCTTTCTTGTCACCA
AGTTTGTTGCTCATGCCCGTCCTCACGATGTGTCGGCAAGCATACCAACG
TTTCGACAACCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCC
CCCCTCCCCTCCCCCCTGGCGTGTGGCCATGACGGAGGAACAAGGNNNNN
NNNNNTTTTTTTTTTTCCCCATTTTTTTTTTCGTGCCCCCCCCCCACGCG
GGGTGGGCAAAAAACCAAACTTTTCGCCACCCCCCCCCCCCCCCCCCCCC
TCCCGATGCTCCGTCGTTTCGAGGACCGTGATGAATGGTGTAACCGCTAA
GACATGCAAATATGAGATGCACTCCCCGCCCCCCCCTCTCCCGTGATCCT
TTTCAATATCGTGGATTATTACCCCCGACCCATGGCCAACAGGCGAAGAG
GAGGAGAGGGCGCCGTTCAGCAGAACACCGAAGGCTCCGCTGTCGTCCTC
GACGAGGCTAGCCTTGGCAGAGAAGACCTTGGCGGAGGTGACCGCTCAGC
GTGATGATGCCCTCGAGCTGCTGGAGTCGTCCAGACAGGAGAACGCCAGG
CTCACGGCCGAGCTGGACCGGGCGCGTTCGTACAAGGCGCTGTACGCCGC
TGCTCACCATGTGGGTTTTCGTGGTGGGGGGGGCGATTTTGCGGGCTTGA
CTGTGCCGTCATCCTTCCTGATTTTCTGTGGTACGATTTTTCCAGTGTGT
GGTGGAGTATGGGTCCTCCTTTCTCTCTTCTTCCTGGTGTGTTGTGTCGT
TCTCCCTATTTAGTTGGACCACCATCGTGAAGACCCTTCTCGAACACCCT
TAGTGTGCCTGCAACCAGTGGCAGTTTTTTCTTGTTTGCATGGACGAGTT
CAAGGGTCGGCCCGTCTCTCCAAAAGTCAGCCGTGCACCTTTGTTCACCG
CTGCATCTCGCTCTCGGCGGCGTGTAACACTGTCTGTTGGAAGCGCACAC
ACCACGCGGACGAGCTCCTTGCATTTCCTATGCATACAACAAGTGTATAC
TTATCTGTTAGCAGGCGCGCACCACATGCACGAGTTTCTTACGGCACGTG
TTCGTTCCTTGAACCGACTTCCCCGTTTCGTCGTTGTCTCTTTTCGTACT
ACCGCGAGCAGGAGCACCAGGGCATGAAGGCCTCCTTGGCGGCCTCCACC
CAGATCTGCATGGGCCAGCAGAAGCTCATCCAGATGCTACAGCAGACCTC
CTCGGCGCCGCCCCCCGCCCTCGACCCTGAAGACTTCCTCGCCAGCGTGG
GCGGGGGCGGTGGCAGGCCCCCGCCGCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig202:16131..21609+

>mRNA_Ecto-sp13_S_contig202.6630.1 ID=mRNA_Ecto-sp13_S_contig202.6630.1|Name=mRNA_Ecto-sp13_S_contig202.6630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig202:16131..21609+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCGAAGGGCTCGCGTCGGCGCGTGGAGCGCGAGCTCCTGGCGAT
GCGAGACGAGGCTCAGCAACAGGCGAGCGGGGGCACGTATCGCAGCAGCA
GTCATCGGGATCGGGGAGCGTCGCGAAAGCACCAAGGCACGGATGGCGGA
TCGGCGGACGGTTGGCGGTACAGCGAGGACACAGCGAGTCAGCTGAGCAA
CACTGAGGGCCGCGGCGGCGGTGGGCGATCAGCTGGGTCTATGGCGGGGG
CTGGTTCAGCGACGGACGATTCTTGCGGCGAAGAGGAGGAGAGGGCGCCG
TTCAGCAGAACACCGAAGGCTCCGCTGTCGTCCTCGACGAGGCTAGCCTT
GGCAGAGAAGACCTTGGCGGAGGTGACCGCTCAGCGTGATGATGCCCTCG
AGCTGCTGGAGTCGTCCAGACAGGAGAACGCCAGGCTCACGGCCGAGCTG
GACCGGGCGCGTTCGTACAAGGCGCTGTACGCCGCTGCTCACCATGAGCA
CCAGGGCATGAAGGCCTCCTTGGCGGCCTCCACCCAGATCTGCATGGGCC
AGCAGAAGCTCATCCAGATGCTACAGCAGACCTCCTCGGCGCCGCCCCCC
GCCCTCGACCCTGAAGACTTCCTCGCCAGCGTGGGCGGGGGCGGTGGCAG
GCCCCCGCCGCCA
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