mRNA_Ecto-sp13_S_contig202.6629.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig202.6629.1
Unique NamemRNA_Ecto-sp13_S_contig202.6629.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: D8LLH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH0_ECTSI)

HSP 1 Score: 550 bits (1416), Expect = 5.170e-196
Identity = 280/287 (97.56%), Postives = 284/287 (98.95%), Query Frame = 1
Query:    1 MARVLASCWMIVSLVPGACFLVPTNSRAALYSAGRRQLGQGYRDQQPSSRQPRNTGAGRREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDNEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALEDWRETA 861
            MARVLAS W+IVSLVPGACFLVPTNSRAAL+SAGRRQLGQGYRDQQPSSRQPRNT AGRREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFND+EFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIP+KSKGDKVNLEVDVLGKYIERSLSSVLDRLGALEDWRE A
Sbjct:    1 MARVLASSWVIVSLVPGACFLVPTNSRAALHSAGRRQLGQGYRDQQPSSRQPRNTAAGRREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDDEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPKKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALEDWREWA 287          
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: A0A835Z1K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K1_9STRA)

HSP 1 Score: 347 bits (891), Expect = 2.130e-115
Identity = 182/284 (64.08%), Postives = 217/284 (76.41%), Query Frame = 1
Query:  175 RREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDNEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALEDWRETADRKLASSK-DGAEASE--------DIDFKIRHVEHKVKNRDMVLDVIENRLARLE 999
            RR V+RAMFSGIVEE G+V SL +N  +KLWDGS G GVELT+ A   LEGA+ GCSIAVNGVCLTVT F++ +F+VGLAPETLRRSNL DL AGD VNLERAL   GRNSGHFVQGHVD+VGTI +   + DSL V+V  P++L+RYI PKGFIA+DGTSLTVCEVN  E WFTFMLVAYTQ H+V+P K+ GDKVN+EVDVLGKY+ERSL+SVLDRL ALE    TA    A  K +GA A           +++++  VEHKV +RD+V+D +E RL  +E
Sbjct:   58 RRAVIRAMFSGIVEEKGTVKSLERNSAIKLWDGSVGEGVELTIAAKVALEGASLGCSIAVNGVCLTVTDFDEEQFRVGLAPETLRRSNLRDLAAGDAVNLERALASGGRNSGHFVQGHVDDVGTIAAFTPEGDSLWVRVSAPRELMRYIVPKGFIAIDGTSLTVCEVNAAEAWFTFMLVAYTQAHIVLPGKAVGDKVNIEVDVLGKYVERSLASVLDRLDALE----TAAAAAAPPKAEGARAXXXXXPAAEGSVEYRLGAVEHKVTSRDLVIDSVEARLRTIE 337          
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: A0A6V1VK25_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VK25_HETAK)

HSP 1 Score: 298 bits (764), Expect = 3.090e-97
Identity = 153/229 (66.81%), Postives = 178/229 (77.73%), Query Frame = 1
Query:  160 NTGAGRREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKAN-TVLEGATEGCSIAVNGVCLTVTSFNDNEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALE 843
            N  A   +V R MFSGIVEEMG V SL +   +K+WDGS G+G EL ++++ TVL+GA +G SIAVNGVCLTV  F+D  F+VGLAPETLRRSNL  L AG  VNLERAL  D RNSGHFVQGHVD  GTIL +  + DSL VKV V ++L+RYI PKGFIA+DGTSLTVCE N  E WF FMLVAYTQ+H++IP KS GDKVN+EVDVLGK +ERSL +VLDRL ALE
Sbjct:   33 NPRASSTQVPRMMFSGIVEEMGIVRSLEEKTDMKMWDGSTGSGTELCIESDGTVLDGAYDGASIAVNGVCLTVIEFDDKSFRVGLAPETLRRSNLPLLEAGQRVNLERALAADARNSGHFVQGHVDETGTILELRPEGDSLWVKVGVSRELMRYIVPKGFIAIDGTSLTVCETNVAEGWFNFMLVAYTQKHIIIPSKSLGDKVNVEVDVLGKLVERSLGNVLDRLDALE 261          
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: A0A7S3AZ04_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ04_9EUKA)

HSP 1 Score: 293 bits (750), Expect = 1.480e-95
Identity = 148/218 (67.89%), Postives = 171/218 (78.44%), Query Frame = 1
Query:  190 RAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDNEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALE 843
            RAMFSGIVEEMG++  L K D + LWDGS G G E+ V+A+ VL  A+ GCSIAVNGVCLTVT F++  F VGLAPET+RRSNL  L+ GD VNLERALP DGRNSGHFVQGHVD+VG +  +  D DSL VKV  P  L+ YI PKGFIAVDGTSLTVCEVN  E WF FMLVAYTQQ ++IP+K  GD VNLEVDV+ KY+E+S++SVL RL ALE
Sbjct:   16 RAMFSGIVEEMGTIRRLEKVDGLTLWDGSVGEGWEMEVEASEVLGQASLGCSIAVNGVCLTVTEFDEGSFSVGLAPETIRRSNLVKLKTGDPVNLERALPADGRNSGHFVQGHVDDVGILEELLPDGDSLFVKVRPPARLLPYIVPKGFIAVDGTSLTVCEVNYTEGWFNFMLVAYTQQKIIIPKKKVGDPVNLEVDVISKYVEKSMASVLARLDALE 233          
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: A0A8J6CDG9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDG9_DIALT)

HSP 1 Score: 290 bits (742), Expect = 9.200e-94
Identity = 154/258 (59.69%), Postives = 190/258 (73.64%), Query Frame = 1
Query:   82 AALYSAGRRQLGQGYRDQQPSSRQPRNTGAGRREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDNE--FKVGLAPETLRRSNLED--LRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALE 843
            A + +AG R      R    ++   R+T A    + RAMFSGIVEEMG V SL +   +KLWDG+ G+G EL V+ +TVL+GAT+GCSIAVNGVCLTV  F+     F+VGLAPETLRR+NL    L+AGD VNLERALP DGRNSGHFVQGHVD VG ++S+  D DSL V V+ P+ L++YI PKGFIAVDGTSLTVC+V+     F+FML+ YTQQHVVIP+KS G  VNLE DV+GKY+ERSL+ + +R+ ALE
Sbjct:   12 ALMPAAGWRPAAAAMRGSAVAATMRRSTRAPAASLPRAMFSGIVEEMGRVESLAERTDMKLWDGTIGSGWELAVRGSTVLDGATQGCSIAVNGVCLTVVDFDAGSGVFRVGLAPETLRRTNLNPAALKAGDAVNLERALPADGRNSGHFVQGHVDAVGELVSLTPDGDSLWVVVKAPRSLMKYIVPKGFIAVDGTSLTVCDVDYAASTFSFMLIGYTQQHVVIPQKSAGLTVNLEADVIGKYVERSLAGLSERVAALE 269          
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: A0A0M0JSD6_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JSD6_9EUKA)

HSP 1 Score: 284 bits (727), Expect = 2.430e-92
Identity = 143/216 (66.20%), Postives = 168/216 (77.78%), Query Frame = 1
Query:  196 MFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDNEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALE 843
            MFSGIVEEMG V+ L K  ++K WDG+ G G EL V+A   LEGA+ GCSIAVNGVCLTVT F+ ++FKVGLAPET+RR+NLE L  GD VN+ERALP DGRNSGHFVQGHVD++G I  +  D DSL V+V  P  L+ YI PKGFIA+DGTSLTVC VN  E WF FML+A+TQQ VVIP+K+ GD VNLEVDVL KY+E+ L +V  RL ALE
Sbjct:    1 MFSGIVEEMGKVSKLDKVPRLKQWDGTVGEGWELEVEATVALEGASLGCSIAVNGVCLTVTEFDKHKFKVGLAPETIRRTNLERLVPGDPVNVERALPADGRNSGHFVQGHVDDIGIIEELRPDGDSLWVRVRPPARLMPYIVPKGFIAIDGTSLTVCNVNAAEGWFDFMLIAFTQQKVVIPKKAVGDAVNLEVDVLAKYVEQGLKAVTARLDALE 216          
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: B7G545_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G545_PHATC)

HSP 1 Score: 283 bits (725), Expect = 6.840e-92
Identity = 139/232 (59.91%), Postives = 178/232 (76.72%), Query Frame = 1
Query:  196 MFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDNE--FKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALEDWRETADRKLASSK 885
            MF+GIVEEMG V SL + D + LWDG++G+G ELTVKA+ ++EGA  GCSI V+GVCLT T  + +E  F+VGLAPET+RR+ L DL+ GD VNLERA  + GRNSGHFVQGHVD+ G I+    DEDSL  K++V  D++ YI PKGFIA+DGTSLTVCEV+ QE WFTFMLV YTQ+ +++P K  GD+VNLEVDVLGKY E +L++++ RL ALE   E+ ++ L + K
Sbjct:    1 MFTGIVEEMGEVVSLTQRDDMPLWDGTKGSGTELTVKASIMMEGAYLGCSICVSGVCLTATELDYDESIFRVGLAPETIRRTYLGDLKTGDAVNLERASEIGGRNSGHFVQGHVDDTGEIIDRWTDEDSLFFKIKVTPDVLAYIVPKGFIAIDGTSLTVCEVDYQEKWFTFMLVEYTQKKIIVPAKKVGDRVNLEVDVLGKYSENALAALIPRLEALEAKVESLEKALVAGK 232          
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: A0A7S3SZI5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SZI5_9SPIT)

HSP 1 Score: 280 bits (717), Expect = 1.040e-90
Identity = 138/218 (63.30%), Postives = 166/218 (76.15%), Query Frame = 1
Query:  190 RAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDNEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALE 843
            R +FSGIVEE+G V  L K   + LWDGS G GVE+ V A+TVLEGA EGCSIAVNGVCLTVT F+D     GLAPETLRR+NL     G  VNLERALP DGRNSGHFVQGHVD+VG I SM  D ++L V++  P  L++YI PKGFI VDGTSLTVCE +  + WF FMLVAYTQQH+ +P+K  G++VNLEVDV+ KY+ERS+ +++DR+  LE
Sbjct:    2 RCVFSGIVEEIGEVVRLEKRGDLTLWDGSVGEGVEMEVAASTVLEGAYEGCSIAVNGVCLTVTKFDDKTACFGLAPETLRRTNLHAAGPGTLVNLERALPADGRNSGHFVQGHVDDVGVIESMTPDGEALTVRIRPPAHLMKYIVPKGFICVDGTSLTVCEADPGKGWFDFMLVAYTQQHIALPKKKVGEQVNLEVDVMAKYVERSVGALVDRVAELE 219          
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: A0A7S3PVE8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVE8_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.500e-90
Identity = 138/231 (59.74%), Postives = 178/231 (77.06%), Query Frame = 1
Query:  196 MFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDNEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQ--ECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALEDWRETADRKLASS 882
            MF+GIVEEMG+V  L + D + LWDGS+G+G ELTVK N VL+GA  GCSI VNGVCLT T   +  FKVGLAPETLRR+ L +L++GD VNLERA  + GRNSGHFVQGHVD VGTI+    DEDSL  KV+V  +L+RYI  KGF+A+DGTSLTVCEVN++  E WFTFMLV YTQ+ ++IP+K  G+ +N+EVDVLGKY E +L++++ R+  LE   ++ + +LA++
Sbjct:   42 MFTGIVEEMGTVIKLEERDDMTLWDGSKGSGTELTVKGNIVLDGAYLGCSICVNGVCLTATELEEEFFKVGLAPETLRRTYLGELKSGDFVNLERASEIGGRNSGHFVQGHVDGVGTIIDRWIDEDSLFFKVKVEPELLRYIVAKGFVAIDGTSLTVCEVNSRLDESWFTFMLVEYTQKKIIIPQKKVGELLNIEVDVLGKYSESALAAIIPRIEELESKVKSLEEQLANA 272          
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Match: A0A7S1ZE03_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZE03_TRICV)

HSP 1 Score: 280 bits (717), Expect = 6.510e-90
Identity = 142/242 (58.68%), Postives = 178/242 (73.55%), Query Frame = 1
Query:  169 AGRREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTS--FNDNEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQ--ECWFTFMLVAYTQQHVVIPEKSKGDKVNLEVDVLGKYIERSLSSVLDRLGALEDWRETADRKLASS 882
            AGR    R MF+GIVEEMG V SL + D + LWDGS+G G ELTVK    ++GA  GCSI V+GVCLT T   F  ++FKVGLAPETLRR+ L  L+ G  VNLERA  + GRNSGHFVQGHVD +GTI+    DEDSL  KV+V  DL+RYI PKGF+A+DGTSLTVCEV+ +  E WFTFMLV YTQ+ ++IP+K  GD +N+EVDVLGKY E ++++VL R+  LE+  +  ++KLA +
Sbjct:   40 AGRTTTRRRMFTGIVEEMGEVVSLEERDDMTLWDGSKGKGTELTVKGKVAMDGAYLGCSICVSGVCLTATELDFPSDQFKVGLAPETLRRTYLGSLKPGSAVNLERASEIGGRNSGHFVQGHVDGIGTIIDRWTDEDSLFFKVQVDDDLLRYIVPKGFVAIDGTSLTVCEVDTRPDEKWFTFMLVEYTQKKIIIPQKVVGDPLNIEVDVLGKYSESAIAAVLPRIEELENRVKELEQKLAEA 281          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig202.6629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLH0_ECTSI5.170e-19697.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z1K1_9STRA2.130e-11564.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1VK25_HETAK3.090e-9766.81Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3AZ04_9EUKA1.480e-9567.89Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A8J6CDG9_DIALT9.200e-9459.69Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0M0JSD6_9EUKA2.430e-9266.20Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
B7G545_PHATC6.840e-9259.91Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S3SZI5_9SPIT1.040e-9063.30Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S3PVE8_9STRA2.500e-9059.74Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1ZE03_TRICV6.510e-9058.68Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig202contigEcto-sp13_S_contig202:10664..15210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score551.2
Seed ortholog evalue3.4e-154
Seed eggNOG ortholog2880.D8LLH0
Preferred nameRIB5
Model size1083
KEGG rclassRC00958,RC00960
KEGG koko:K00793,ko:K22382
KEGG ReactionR00066
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004746,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons7
EggNOG free text desc.riboflavin synthase activity
EggNOG OGsCOG0307@1,KOG3310@2759
Ec32 ortholog descriptionRiboflavin synthase, putative
Ec32 orthologEc-00_004570.1
EC2.5.1.9
Cds size1023
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig202.6629.1prot_Ecto-sp13_S_contig202.6629.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig202 10664..15150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463015.402565-CDS-Ecto-sp13_S_contig202:10663..107121681463015.402565-CDS-Ecto-sp13_S_contig202:10663..10712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 10664..10712 +
1681463015.418777-CDS-Ecto-sp13_S_contig202:11767..118901681463015.418777-CDS-Ecto-sp13_S_contig202:11767..11890Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 11768..11890 +
1681463015.4323134-CDS-Ecto-sp13_S_contig202:12212..124421681463015.4323134-CDS-Ecto-sp13_S_contig202:12212..12442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 12213..12442 +
1681463015.4462907-CDS-Ecto-sp13_S_contig202:12914..131001681463015.4462907-CDS-Ecto-sp13_S_contig202:12914..13100Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 12915..13100 +
1681463015.4569483-CDS-Ecto-sp13_S_contig202:13341..134761681463015.4569483-CDS-Ecto-sp13_S_contig202:13341..13476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 13342..13476 +
1681463015.466228-CDS-Ecto-sp13_S_contig202:14032..141641681463015.466228-CDS-Ecto-sp13_S_contig202:14032..14164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 14033..14164 +
1681463015.4760268-CDS-Ecto-sp13_S_contig202:14982..151501681463015.4760268-CDS-Ecto-sp13_S_contig202:14982..15150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig202 14983..15150 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463015.486286-UTR-Ecto-sp13_S_contig202:15150..152101681463015.486286-UTR-Ecto-sp13_S_contig202:15150..15210Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig202 15151..15210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig202.6629.1

>prot_Ecto-sp13_S_contig202.6629.1 ID=prot_Ecto-sp13_S_contig202.6629.1|Name=mRNA_Ecto-sp13_S_contig202.6629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
MARVLASCWMIVSLVPGACFLVPTNSRAALYSAGRRQLGQGYRDQQPSSR
QPRNTGAGRREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELT
VKANTVLEGATEGCSIAVNGVCLTVTSFNDNEFKVGLAPETLRRSNLEDL
RAGDGVNLERALPVDGRNSGHFVQGHVDNVGTILSMEADEDSLVVKVEVP
QDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPEKS
KGDKVNLEVDVLGKYIERSLSSVLDRLGALEDWRETADRKLASSKDGAEA
SEDIDFKIRHVEHKVKNRDMVLDVIENRLARLEAAEKKKA*
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mRNA from alignment at Ecto-sp13_S_contig202:10664..15210+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig202.6629.1 ID=mRNA_Ecto-sp13_S_contig202.6629.1|Name=mRNA_Ecto-sp13_S_contig202.6629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4547bp|location=Sequence derived from alignment at Ecto-sp13_S_contig202:10664..15210+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGTGTGCTAGCATCGTGCTGGATGATCGTGTCATTAGTTCCAGG TGGGATGTGTAACACGAACAAGTGTTCCTGTTGGTGCAAGTTGACCTACA TACAGAGTGTACAGCAGTAGCAGCGGCGGCGTCAATGGCAGATACGTCGT CGACGGAAACGCGTGGTGCGTTAAGGCACAGCAGCAGCGGAGTCCGAGAT CCATGACTCCAGGCGGGGGATAAAAATGCGCGAACGAAATTTGGTAATTC GATTTTTACACAGGTATCCGAGTCACCGCACACGTGGAAAATCCTACGGA AGATGCGTGGCGTGCTACAATACACACCCGGCCACTCGGTGCCATTTGTG TGGAAAGAATGGCCGGCGGCAACCTCTCTTGGCGCATGTGTTGATGTAGA TGTGCCGGTGAGATCGTGTGTGTGTGCGTCTCAAAGGTGTCCGCGATAAA AGCATTTGTGTCGTTTGTCCTGCTCTCTCTCTGAAATGATCAACTTACGG AGGACTGGGCACTTTACCCAACAAACCCCAATTCCATGTGTACGATGTAA CACAAGGTCGCGAGTCAACGCACAGAGGTGCGAGCGATTTTCCAAGCGTA ACATCTCCACAACCAAGAGGTTACCACTGTCGAAAAGGGCGGTTTTGGAA ATATCTTATCGAGAACTTTCCTGAGAAGTGGTACGTATCAGTGGGCGCTC GCACCCTTGTGGCTGTGGAGAATTACGCTTTGAAAATCGATCGCACCCCT TGTGCGCTGACTCGCAACCTTGCGGTAAACCTCAACCTCTTTAAATCTGA TCCCTCACATCCTACTATAAACCTCAAATGCTCTCTTGACTGTTTGTAAA CCATAAATAAGCCCGACCCTGCTCACAAAACCAAACGCACTTACTCTATT GAAACTACCCTCACGTCTTTTTTTCGTACACTTACAAGCACGGTTGACTC ATTGCACGGCGATGTAGACCACATCTACGACGCGTTGGGAAACAGCAGCT GCCGCCAGCAGTTGCATGCAGCGTTTGTTCGTAGATTTGCCTCTCTACCC GTTTCGTTCCAATGTTTCACCAGAGACAGCGCCTTGTGATCGGATCAACC GCAGGGGCATGCTTCCTGGTGCCGACAAACTCGAGAGCTGCACTGTACTC AGCGGGGCGCCGTCAGCTCGGGCAAGGGTACCGAGATCAACAGCCGTCCT CGCGGCAACCTCGAAACACAGGAGCAGGTGAGCAAAACACAACGAAAAAT GATGAATCAGTACCTGTATCACAATTCCAACGTACCACTCTGCAGGCACG GGCTTTGTACGACCCCCCCTTGCCTCCCCCCGCCCGTAGTCGCAAAGTAC CTTTTTCTCTCTGACACACCAGCAAGACGTTGGTAGATGCATCACCTCCT GCGGCGGCAGCAGCGCCAGGATGTAGAATCATTCCCATCCTGCTCTTGTA TCGATTACGAACGGGCCCCCTCGGACTCTCACGCGGTTGCAACGATACGC GGGGTCTACTTCCTGCGTTCCTCTTTCGCGTGGCGCAACCCGCGCGCAGG GCGACGAGAAGTCGTGCGAGCTATGTTCTCGGGCATCGTGGAGGAGATGG GATCGGTGGCCTCGCTCGTAAAGAACGACAAGGTCAAGCTCTGGGACGGT TCGGAGGGGGCCGGGGTCGAGCTCACGGTCAAGGCGAACACCGTCCTGGA AGGAGCCACGGAAGGGTGTAGCATTGCCGTCAATGGCGTTTGCCTGACGG TCACCTCCTTCAACGACAACGAATTCAAGGTGAGCAGTTTGAGTCTCCAG ACAGCCGTTGGTGACAACAGGCACCACACCCGCGTGAAAACGGTTTTTGT TTTAATGTTTGTAGTCCAACAGGACATATAGACGAGTTTACTTATGAGTT TTCTGATCAGAGATTTTTCTTATGGTCCGTACAACGCAGGGTGCTCATCA CCAGCTACCCCAAATGTTTGTATGTATGCCTTCGGATGCACAAGACAGGA TGCTCCCCACCTGCTACCCAAGGTTTTGCGTGCATGCCTTTGCAGTACTC GTGCGTAATCTTCTTTGTTTCCGAATGTGATCACGAGAGACGGTATGTAT CTGATGGCGCTTCCATGCACAACACAGGATGATCACCAACAGGTATGCCC CCAAGTGTCTGTATGCATGCATTCCGCGTACGCCCTTCTTTTTTTCGTAT GTGATTATTAGAGACGCGCTTCGATCGCGATGCACCGGTGAATAAATAAA GGTGGGCCTCGCGCCCGAGACCCTCCGGAGATCAAACCTGGAAGACTTGA GGGCGGGGGACGGGGTCAACCTTGAGAGGGCCCTGCCCGTGGACGGGCGA AACAGCGGCCACTTCGTTCAGGGGCACGTGGACAACGTCGGGACTATCCT GAGCATGGAGGCCGACGAGGACTCGCTCGTCGTCAAGGTGTGACCCACCG CGTTGGATGGAAGCGGCCGCCAGCGGATGTGCTTGTGAAGGAGCAGTCAA GAGGCGCAGTCGCAGTAGCTCACGATGTGCTTCAATGCGTTGTCGATCTC AAGCCCCCCGTTCCTAACTAGACCTTCCATCGTGTGTTGGCCCAGAACCC CCGTCAATCCTGGCTACTCCCGGCTATTTCTATTGTTGCGTGCCGTCACG CCGTGATTGTCATATCATGTGTGCACAGGTGGAAGTTCCCCAGGATTTGA TAAGATATATCGCCCCGAAGGGCTTCATCGCGGTGGATGGCACCAGCCTC ACGGTGTGCGAAGTGAATAACCAAGAGTGCTGGTTCACCTTCATGCTGGT GGCCTACACGCAGGTACCTAGACCCCGATGCTGTCCTGCACTTACATGCT CTCGTGCGCATGTTAGGGCACCGGAGCATTATGGACCTATAATAGGCAAA ATAACCCTTGGTTGGCGAACCAGCGTGCTGTTTGCGAATGACTTGTCTAT TCGCCTGAGTGCAGTCTGGCACTACGGTCTGTAGGGTCTCGACACGCCAG TCGGGGCGGGAATAAGAACGGCCGATCGGGACACATGATGACTTGCGTGC GGTGTTGCATTTTTTTGCTTCGGATTCGTGGCATCCACGAGGGATTGTCA AACGAAACCGACCAACGTCCATCAAACCTCCCAGATGCAATGTTGAAGGT GTTCATTGTTGTTTGTCCGTACCGGCCATCTATTACGACCCATAATGGCC CGAGTGGTCAACACGGTTACCGTAAGCGGTGCCCTCCATGCAAAATAACA AGTAAATAGACTCTACGCTGACACCTTGCGTTCTTGCGTGTCCTTGTCAC TGATCCTCCCCCCCCCCCCGCGCGCGTTCCCCCTTTCCCCATCTTTTTGC CCCCTCCACCCCGCTACAGCAACATGTGGTAATTCCGGAGAAGAGCAAAG GGGACAAGGTTAACCTCGAGGTGGACGTGTTGGGCAAGTACATCGAGCGA TCTTTGTCGTCGGTGCTGGACAGACTAGGCGCCCTCGAAGACTGGCGAGA GGTCAGTACAATACAATGCGTGTTGTTCTGCTTCGTACAAGTGTAGCATG TTCCTGACCACTTGTAATGCTTAGTCGTGGGAGCATCTGTGTACACGCTG CTGTTTGGTTTGAAAGTGGTCTGGCGGAGCGTAGTACCCGAAGCACGATA TTGGCCACACCTGCTGCGTCTGCCCTCGTGCCGTGCTCTTCACCACAGGT GCTAGTAGGTTCAGAGACGATAGAAATTGGATGGATGTTGCCAGTAGTCG GCCCAGTAAATACTGGGTTGCTCTAACACTCACCTTTGTTTATTCCCAAG ACCAAGCAACAAATCTCATGTAGTTGTAGAGTTCCACTTACTTTCCCCGT GGTATTATTTCTCAGGAAATATGTTCTCGTTTGCAAAGGGTACCCTTGAC ATACGAAGGAGACCCAGGTAGTGCTTTGGTACTTTTCAATCACTATCGGG AGCAGTGAAGTCTGTCGTTCTTTGTTTCTTGATATTTGGCAACAAGAAAG TATCTTTTGGCATCGAGGAAGTCTCAGAGAGAGAGAGAAAGAGGGAGAGA AAGCGGGCAAGGGATGTGGAAAGACTTCCCGCTCCTCGTCTGTTGAGCAA GTGGTTTTATCAAAAGTCAAAGTGGCCGGATCCACAGCGGCTTTCTTGCT GCCCAACGATCAACAAGATTCACATTCCCCACCCACCCACGTATTCTTAA ATTCGTAGACTATTGTTCCAGAAGCAGTGGTTGCGTCATCTCTACCTTCA TTCACTCGTTGGGGTTGCCGACTCCCGTCGTTTGTGCGGCTGCCTGCTGC CCGTGCGCTCTTGATTCAGACCGCGGATCGGAAGCTCGCTTCCTCCAAGG ACGGGGCGGAAGCCTCCGAAGACATAGACTTCAAGATCCGCCACGTCGAG CACAAAGTCAAAAACCGCGACATGGTCTTGGACGTTATCGAGAATAGGCT GGCCCGCCTAGAGGCCGCAGAGAAGAAGAAGGCGTAGTAAATGTTTTTCC GTGATGTTGCCCGATTTAAACCAGAGACGTAATAGTTTTCGGGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig202:10664..15210+

>mRNA_Ecto-sp13_S_contig202.6629.1 ID=mRNA_Ecto-sp13_S_contig202.6629.1|Name=mRNA_Ecto-sp13_S_contig202.6629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig202:10664..15210+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGTGTGCTAGCATCGTGCTGGATGATCGTGTCATTAGTTCCAGG
GGCATGCTTCCTGGTGCCGACAAACTCGAGAGCTGCACTGTACTCAGCGG
GGCGCCGTCAGCTCGGGCAAGGGTACCGAGATCAACAGCCGTCCTCGCGG
CAACCTCGAAACACAGGAGCAGGGCGACGAGAAGTCGTGCGAGCTATGTT
CTCGGGCATCGTGGAGGAGATGGGATCGGTGGCCTCGCTCGTAAAGAACG
ACAAGGTCAAGCTCTGGGACGGTTCGGAGGGGGCCGGGGTCGAGCTCACG
GTCAAGGCGAACACCGTCCTGGAAGGAGCCACGGAAGGGTGTAGCATTGC
CGTCAATGGCGTTTGCCTGACGGTCACCTCCTTCAACGACAACGAATTCA
AGGTGGGCCTCGCGCCCGAGACCCTCCGGAGATCAAACCTGGAAGACTTG
AGGGCGGGGGACGGGGTCAACCTTGAGAGGGCCCTGCCCGTGGACGGGCG
AAACAGCGGCCACTTCGTTCAGGGGCACGTGGACAACGTCGGGACTATCC
TGAGCATGGAGGCCGACGAGGACTCGCTCGTCGTCAAGGTGGAAGTTCCC
CAGGATTTGATAAGATATATCGCCCCGAAGGGCTTCATCGCGGTGGATGG
CACCAGCCTCACGGTGTGCGAAGTGAATAACCAAGAGTGCTGGTTCACCT
TCATGCTGGTGGCCTACACGCAGCAACATGTGGTAATTCCGGAGAAGAGC
AAAGGGGACAAGGTTAACCTCGAGGTGGACGTGTTGGGCAAGTACATCGA
GCGATCTTTGTCGTCGGTGCTGGACAGACTAGGCGCCCTCGAAGACTGGC
GAGAGACCGCGGATCGGAAGCTCGCTTCCTCCAAGGACGGGGCGGAAGCC
TCCGAAGACATAGACTTCAAGATCCGCCACGTCGAGCACAAAGTCAAAAA
CCGCGACATGGTCTTGGACGTTATCGAGAATAGGCTGGCCCGCCTAGAGG
CCGCAGAGAAGAAGAAGGCGTAG
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