mRNA_Ecto-sp13_S_contig20192.6625.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20192.6625.1
Unique NamemRNA_Ecto-sp13_S_contig20192.6625.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20192.6625.1 vs. uniprot
Match: A0A6H5KRL3_9PHAE (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL3_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 6.410e-89
Identity = 180/218 (82.57%), Postives = 184/218 (84.40%), Query Frame = 1 
Query:    1 VEALEAAGKAAKEDLEGKVNEALARAQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQNIVDKLKSDLRHVRNQAGQEARRTEDLGKELEVQRTAARAAEERYRQELEAHAGAITALRQAEDAQDASNKAARDAQHAKDSLAADLIGARARWEAREAALNKTCEDTKERLASLNSQHEILTKHLQNLTEQMEAAQAKRAREDKAVADRVVEEGE 654
            VEALEAAGKA KE+LEGKVNEALARAQAA                              E+Q IV+KL+SDLRHVRNQAGQEARRTEDL KELEVQRTAARAAEERYRQELEAHAGAITALR AEDAQDASNKAARDAQHAKDSLAADLIGARARWEAREAALNKTCEDTKERLASLNSQHEILTKHLQNLTEQMEAAQAKRAREDKAVADRVVEEGE
Sbjct:  511 VEALEAAGKATKEELEGKVNEALARAQAAEARSTKTRLASTVADLVKEKEMAEAESA--EKQKIVEKLESDLRHVRNQAGQEARRTEDLRKELEVQRTAARAAEERYRQELEAHAGAITALRHAEDAQDASNKAARDAQHAKDSLAADLIGARARWEAREAALNKTCEDTKERLASLNSQHEILTKHLQNLTEQMEAAQAKRAREDKAVADRVVEEGE 726
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BLAST of mRNA_Ecto-sp13_S_contig20192.6625.1 vs. uniprot
Match: D7FMD3_ECTSI (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD3_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 6.030e-55
Identity = 145/165 (87.88%), Postives = 153/165 (92.73%), Query Frame = 1 
Query:    1 VEALEAAGKAAKEDLEGKVNEALARAQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQNIVDKLKSDLRHVRNQAGQEARRTEDLGKELEVQRTAARAAEERYRQELEAHAGAITALRQAEDAQDASNKAARDAQHAKDSLAADLIGARARWEAREAALNK 495
            VEALEAAGKA KE+LEGKVNEALARAQ  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +Q IV+KLKSDLRHVR+QAGQEARRTED+ KELEVQRTAARAAEERYRQELEAHAGAITALRQAEDAQD S+K AR+AQH KDSL A+LIGARARWE RE ALNK
Sbjct:  159 VEALEAAGKATKEELEGKVNEALARAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQKIVEKLKSDLRHVRSQAGQEARRTEDVRKELEVQRTAARAAEERYRQELEAHAGAITALRQAEDAQDGSDKGAREAQHGKDSLGAELIGARARWEGREGALNK 323
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20192.6625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRL3_9PHAE6.410e-8982.57TPR_MLP1_2 domain-containing protein n=1 Tax=Ectoc... [more]
D7FMD3_ECTSI6.030e-5587.88TPR_MLP1_2 domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20192contigEcto-sp13_S_contig20192:182..3164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size656
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionsimilar to TPR, partial
Ec32 orthologEc-17_003380.1
Cds size654
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463014.94211-CDS-Ecto-sp13_S_contig20192:181..3401681463014.94211-CDS-Ecto-sp13_S_contig20192:181..340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20192 182..340 -
1681463014.954385-CDS-Ecto-sp13_S_contig20192:1053..11611681463014.954385-CDS-Ecto-sp13_S_contig20192:1053..1161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20192 1054..1161 -
1681463014.9631758-CDS-Ecto-sp13_S_contig20192:1934..20391681463014.9631758-CDS-Ecto-sp13_S_contig20192:1934..2039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20192 1935..2039 -
1681463014.971681-CDS-Ecto-sp13_S_contig20192:2644..28351681463014.971681-CDS-Ecto-sp13_S_contig20192:2644..2835Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20192 2645..2835 -
1681463014.9804132-CDS-Ecto-sp13_S_contig20192:3073..31641681463014.9804132-CDS-Ecto-sp13_S_contig20192:3073..3164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20192 3074..3164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20192.6625.1prot_Ecto-sp13_S_contig20192.6625.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20192 182..3164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20192.6625.1

>prot_Ecto-sp13_S_contig20192.6625.1 ID=prot_Ecto-sp13_S_contig20192.6625.1|Name=mRNA_Ecto-sp13_S_contig20192.6625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
VEALEAAGKAAKEDLEGKVNEALARAQAAEAEARSTKTGLASTVADLVKE
KEMAEAESAEQQNIVDKLKSDLRHVRNQAGQEARRTEDLGKELEVQRTAA
RAAEERYRQELEAHAGAITALRQAEDAQDASNKAARDAQHAKDSLAADLI
GARARWEAREAALNKTCEDTKERLASLNSQHEILTKHLQNLTEQMEAAQA
KRAREDKAVADRVVEEGE
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mRNA from alignment at Ecto-sp13_S_contig20192:182..3164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20192.6625.1 ID=mRNA_Ecto-sp13_S_contig20192.6625.1|Name=mRNA_Ecto-sp13_S_contig20192.6625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2983bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20192:182..3164- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGGCGCTCGAGGCTGCCGGCAAGGCCGCCAAGGAGGACCTGGAGGG
CAAGGTTAACGAGGCGCTGGCAAGGGCACAGGCTGCCGAAGGTGTGGGGG
TCGATTTTTTATTTTGTTCATCACTGTATGTTTAAGCTGTCTCAGGTACC
ATTGTTTTTTTAAAGTATATGTTAACATGGTTTGGTGTGTGTTTTTGTGT
GTATGTGTGTGTTTTTCAGCTTTTGAGGTGCAAAAGCAGCACTCACACAC
GACCACGGCTGGGCTTCTCCCCATGCCTTTTCTTTTTTCTTCCTTGTTTA
CCTCCGGTCCCCTCCCCACCTCCTCACAGCCGAAGCACGGTCAACCAAGA
CCGGACTGGCGTCTACAGTGGCAGACCTAGTGAAGGAGAAGGAGATGGCG
GAGGCGGAGAGCGCCGAACAGCAAAATATCGTGGATAAGCTTAAGAGCGA
CCTCCGGCACGTGAGGAACCAGGCCGGGCAGGAGGCACGTCGGACGGAGG
ACCTCGGGAAGGAGCTAGAGGTGTGTGTCTAGATGTGCGTTTTGGATCGG
AGGAGGCGGAGTGATGGCACCCTCCCCTAGGCCGATTGTCAAAGCTCGAA
ACCTCCACAACCAAGAGCGCGAGGGAGAAGCCCGATATGTCTACGGGAAA
GCCCTCGACGAGACGTTTCCAAAACCACCATTTTAGGTGTTGGCACAAGC
TTAGCTGTGGAGCAATCGAGCTTTGAAATTCAGTCTACGGGGGGGTGCCG
TTTTGTTTGCATCGACCGCGCTTACCAGTTGACCAGTGAAAAACACGTCA
GTCTTACAGCGGGCTCCCCTGGCTTGGGGGGGCCGAGGAGCTTCTTGGTA
CCTACAAGACTTTGGTCGTTATCTTTTTTATTTCGAACTCTTAGGTTGTT
GAAACCCTGGTGTTGTGCAGGTCCGGCGAACAAGGTTTGGATAGTGTCAA
ATGTCGAATTCGTGGTGCTGTTGTTGGCTGTCACACCGTGTCGTCTTGAA
ACCCTTGCGTTGTGCAGGTTCAGCGCACAAGTTACTTTTCATTTCCGCAG
TCTTGGTTGTTGTTCATCTTACACCGTGTTTCTCTTTAAATTACCCCTTT
ACTGTGGTTGTGTTGTGTTGTGCAGGTCCAGCGCACGGCGGCAAGGGCCG
CAGAGGAGAGGTACCGACAGGAGCTCGAGGCGCACGCTGGAGCCATCACC
GCGCTCAGGCAGGCGGAAGATGCCCAAGACGTGAGGGCCACCTTTTCCGA
TCTTGTTTGCTGTCGTTGTGGTTGGTGATGACGCGGCGGCTGCTGCTGCC
ACTGCTGCTGCCGCTGCTGCTGCTGCTGCTGATGCTGTTGCTGTTGTTGT
CTTGGGAGGATGTTCTGCTTTTGCCGAATCTTTCGGGAAGATCTCTCCGT
GCAGGATCCGTCTTACTCCTTTGTGTTGCAAGCTCTGCAGTCTGCGGCTA
TCGTTCATGCGCATTCACGGACGACATTTGAATGCATCTTTCGCCCCGCA
CCTTGCTATGTGCAGGGGTAAAGGGTGGACCTCTTGTCCGACGAAAGACG
AACGACGTGCATAGTCTTGAGTACACCCACCGAAAGACTACACGTCGTGC
ATAGTATTGAGTACACCCACCCAAAGACTACACGTCGTGCATGGTCTTGA
GACACCCACCCACCCATTGGTGGTGAAGACAACGATGAACGGCAATCAAC
AACAAAGCACCCCCCCACCCACCCCAATCCCATCAACCCATGGCATATCT
GGTTTAGCACAGCAAACGTAAGGATGATGACCAGCTTATGGTCCACCTTT
GCGAAATGCAGCCTGGGCCAGCGAAAACCCGGCGTATCGCTCCTTCCCGG
CATTTTTTGTAGGGATACGAGGGTAATGGTCTAAAGAACACGGCATGATG
GGTATACATGAGTACGCCCCGCCCCCCCCCATTTACACGGTTCCCGCTTT
CTCAAAACCTGCTGTTGTCTCTTGGTGTGGCACTGCTGCATTGGTATCGA
CAGGCGAGTAACAAGGCCGCGAGGGACGCGCAGCATGCCAAGGACAGTCT
GGCGGCGGACTTGATTGGCGCCAGGGCTCGGTGGGAGGCACGCGAGGCTG
CGCTCAACAAGGTACACTACGGTAGCACGCATATTGAAATGAGGAATATA
CAGAACACGCCCGCACTACCACGGTACAAGCATCTTGAAATGGTGTTTGT
GCAGAACGCGCCGGCAGCATGAAGGTGTTCACGCATCTTGAAAATGAGGT
TCATGCAGAACGCGCTCGCCCGCAAGAAACCCTTCTTTCGTAAATTTCAA
AGATGTTGCTGAAGAACAGATATCGCGTCTTGCTTTTGTACATTTTGGCT
GAGCGTCATTCGTTTCTTAGTCTTCTCTGATGCCCCGACAGCGACTATAT
ACTTGTAGGCTTCTTCTTGTCTGGACACGTGCCATGGTTGTTGTGGCCAG
GTTTTTTCATTTTCTTGTTGTTGAGCCTGAATTTCTTGATTCCCAAGTTG
CTTGAAGCGCGGATGCTTGCTGTTACGCGAAAAGGAGAAGTTTTTCTAAC
AAGGGATGCCCAAATTTCGCCTGTCCTGTCCTGTCCTGTCCTGTCATCGA
AATACGTTAAGGACACGCAACAAGCTTTGAGACTGCCTCGCGTCAGCCCT
CACTCCGAGCGCTTAGTCCCCTCCCCCCGCCCTAAAGTGATACAAGCAAG
ATAGGGAAACTCTGCCTGAGACACCTTTGGCACTGTAGGAAGGAACGATT
GGCCATCGGTGATCGTTGCCGTGGGGACATGAGACCCCGCCCTCCCCGTG
CACCCCCCCCCCACACACACACAGACATGCGAAGACACGAAGGAACGCCT
GGCAAGCCTGAACTCCCAGCACGAGATCCTCACGAAGCACCTCCAGAACC
TCACGGAACAGATGGAAGCCGCCCAGGCGAAGCGTGCGAGGGAGGACAAG
GCCGTGGCTGACAGGGTCGTCGAGGAAGGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20192:182..3164-

>mRNA_Ecto-sp13_S_contig20192.6625.1 ID=mRNA_Ecto-sp13_S_contig20192.6625.1|Name=mRNA_Ecto-sp13_S_contig20192.6625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20192:182..3164- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGGCGCTCGAGGCTGCCGGCAAGGCCGCCAAGGAGGACCTGGAGGG
CAAGGTTAACGAGGCGCTGGCAAGGGCACAGGCTGCCGAAGCCGAAGCAC
GGTCAACCAAGACCGGACTGGCGTCTACAGTGGCAGACCTAGTGAAGGAG
AAGGAGATGGCGGAGGCGGAGAGCGCCGAACAGCAAAATATCGTGGATAA
GCTTAAGAGCGACCTCCGGCACGTGAGGAACCAGGCCGGGCAGGAGGCAC
GTCGGACGGAGGACCTCGGGAAGGAGCTAGAGGTCCAGCGCACGGCGGCA
AGGGCCGCAGAGGAGAGGTACCGACAGGAGCTCGAGGCGCACGCTGGAGC
CATCACCGCGCTCAGGCAGGCGGAAGATGCCCAAGACGCGAGTAACAAGG
CCGCGAGGGACGCGCAGCATGCCAAGGACAGTCTGGCGGCGGACTTGATT
GGCGCCAGGGCTCGGTGGGAGGCACGCGAGGCTGCGCTCAACAAGACATG
CGAAGACACGAAGGAACGCCTGGCAAGCCTGAACTCCCAGCACGAGATCC
TCACGAAGCACCTCCAGAACCTCACGGAACAGATGGAAGCCGCCCAGGCG
AAGCGTGCGAGGGAGGACAAGGCCGTGGCTGACAGGGTCGTCGAGGAAGG
GGAG
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