mRNA_Ecto-sp13_S_contig2019.6623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2019.6623.1
Unique NamemRNA_Ecto-sp13_S_contig2019.6623.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI)

HSP 1 Score: 610 bits (1574), Expect = 3.280e-215
Identity = 300/308 (97.40%), Postives = 305/308 (99.03%), Query Frame = 1
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVEYFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFPLGSR 924
            MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQE+ERNTRGQVVEYFHD FVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRY TLVLELKRPPVLPPASAL+GKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKV+TFT+EAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVERE+VTL ERFPLGSR
Sbjct:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQEAERNTRGQVVEYFHDAFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVSTFTDEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVERENVTLEERFPLGSR 308          
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: A0A6H5KVU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU6_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 2.140e-104
Identity = 169/175 (96.57%), Postives = 170/175 (97.14%), Query Frame = 1
Query:  400 RYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFPLGSR 924
            RYATLVL LKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEY LEEVKGGGGKK KTRVKVNTFT+EAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVERE VTL ERFPLGSR
Sbjct:    2 RYATLVLALKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYLLEEVKGGGGKKLKTRVKVNTFTDEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREKVTLEERFPLGSR 176          
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: A0A7S2PS12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PS12_9STRA)

HSP 1 Score: 268 bits (685), Expect = 4.580e-78
Identity = 140/307 (45.60%), Postives = 194/307 (63.19%), Query Frame = 1
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVEYFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFPLGS 921
            MNGK+NPWE VN+LPFID   L+  +K LCP ++L+ +E  RN RGQV  Y +D   S    SCN EIGL DI  C +  +++        CF+PE+     IP  GFPSL+VL + + E   + VNCFG++S+Y+T+VL L++ P LP  +ALA +VLG+  ++NWP+MHEA+VV ISD   E R+               K  ++T++ + RW+ ++   Q  Y+ G GVPGSGGVDI +VQ+ LK   LQGM+   A G+ +KVFGK EA++P+HM LW+ P+ D RFVE    +L E FP GS
Sbjct:  307 MNGKKNPWEGVNLLPFIDVALLKETIKNLCPDSSLTAEEFRRNKRGQVFLYSYDLTCSETVPSCNREIGLPDIHSCHSHVKMLDAVDRTDLCFKPEVIPGTKIPYPGFPSLNVLPICNTELTAIGVNCFGSSSKYSTMVLHLQKLPQLPAVAALAPRVLGQILFINWPMMHEAKVVAISDSTTEIRVN-------------GKTKSYTDKESERWQDESMIMQQQYLVGSGVPGSGGVDINEVQIRLKVVVLQGMKTY-ADGSSKKVFGKVEADLPLHMALWASPAPDERFVESGPKSLNELFPKGS 599          
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: A0A7S1UYY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYY6_9STRA)

HSP 1 Score: 259 bits (663), Expect = 9.170e-77
Identity = 132/307 (43.00%), Postives = 181/307 (58.96%), Query Frame = 1
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVEYFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFPLGS 921
            MNGKRNPWE VN+LPFID   L+  +    P + L+  E +RN+RG V  Y HDP  +    S N  IGL DI +C +    +        CF+PEL     +P  GFPS++VL + S E  K  +NCFG+AS+Y  ++L L + P +PP   LAG +LG S Y+NWP+MHEA+VV +SD   E RL  VKG        +  +  F E+    W  ++      Y+ G GVPGSGG+ I ++   LK  PLQGM+     G+ +K+FGKEEA+VP+ + LW  P+ DPRF+E   +T+ +RFP GS
Sbjct:   10 MNGKRNPWEGVNLLPFIDVKLLKQTIATQVPNSTLTNDERKRNSRGVVFMYEHDPTANETIPSPNTSIGLIDIQRCHSKIEEIDEPDRLDICFKPELVPGTKLPYPGFPSMNVLPIASFELTKTGLNCFGSASKYPNMILTLHQLPQMPPVEQLAGNILGHSLYINWPMMHEARVVAVSDAVSEARL--VKG--------KTVIKRFNEKQQDDWYDQSNSMMQKYLNGYGVPGSGGLQINEIVFRLKLLPLQGMKTSAKDGSTKKLFGKEEADVPLQVCLWQAPAPDPRFIEHGPMTIDDRFPAGS 306          
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: A0A1Z5JKV0_FISSO (5'-3' exoribonuclease 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKV0_FISSO)

HSP 1 Score: 263 bits (672), Expect = 4.550e-76
Identity = 134/309 (43.37%), Postives = 189/309 (61.17%), Query Frame = 1
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVEYFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGEC-FRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFPLGSR 924
            MNGK+NPWE VN+LPFID   L++ V++ CP + LS  E  RN+ G +  Y HDP       S NP IGL DI  C ++  ++ F   P    F P+L     +P  GFPSL+VL + S+   K  +NCFG  S+Y   +L L   P L P   LA  +LG+S ++NWP+MHEA+V+G+S E  E ++       GK+     KV+ F +  A +WR  + E   +Y  G G PGSGGV IG V+L LK +PLQGM+++P  G+++K FG++EA+VP+ + L+  P+ DPRF+ER   TL +RFPL S+
Sbjct:  551 MNGKKNPWEGVNLLPFIDIALLKSTVEKFCPDSKLSTAELVRNSMGTIYCYKHDPTSIETVTSPNPSIGLPDISVCHSTISVIEFDEGPSTSKFEPKLVSGTQLPYPGFPSLNVLPIASIALTKAGLNCFGVPSKYLNTILHLTELPELAPIEQLAESLLGKSVFVNWPMMHEAKVIGLSSESREIKIL-----NGKR-----KVSEFGKVEADKWRTDSMEMLQSYHVGNGTPGSGGVYIGPVRLRLKVQPLQGMKINPNNGSKKKYFGQQEADVPLQLCLFQAPAPDPRFIERGPATLQDRFPLNSQ 849          
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: K0STL9_THAOC (5'-3' exoribonuclease 1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STL9_THAOC)

HSP 1 Score: 259 bits (663), Expect = 7.490e-75
Identity = 136/304 (44.74%), Postives = 182/304 (59.87%), Query Frame = 1
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVEYFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFP 912
            MNGKRNPWE VN+LPFIDA RL+ A+K+ CP   L+ +E  RN  GQV  Y +D   +    SCN +IGL +I +C +    +  S E    F PEL     IP  GFPSL+VL +  VE R   +NCFG AS+Y   +L +   P LP A  LA  ++G+S Y+NWP+MHEA+VV ++D K E R+           K ++K      +   RW   + +    Y+ G G PGSGGV IG VQ+ LK  PLQGM+  P  G+ +K+FGKEEA++P+ M L S P+ DPRF+ER   +L +RFP
Sbjct:  619 MNGKRNPWEGVNILPFIDANRLKDAIKDNCPDRLLTAEERNRNRVGQVFCYSYDEACNDTIPSCNRDIGLPNIEKCHSRVITIDNSSESTVSFSPELIPGTKIPYPGFPSLNVLPIERVELRNAGLNCFGFASKYPNTILTMHTLPQLPSAEQLAANLIGKSIYVNWPMMHEAKVVAVTDSKSEVRMV----------KKKLKTRRHGLQEVERWNAISEKMVEQYLAGAGYPGSGGVQIGDVQIRLKILPLQGMKASPLDGSSKKLFGKEEADLPLQMALASSPAPDPRFIERGPKSLKDRFP 912          
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: A0A7S3LCK7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCK7_9STRA)

HSP 1 Score: 256 bits (655), Expect = 2.980e-74
Identity = 138/311 (44.37%), Postives = 189/311 (60.77%), Query Frame = 1
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVEYFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPG---ECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFPLGSR 924
            MNGKRNPWE VN+LPFIDA  L+  + E CP + LS  E +RN  G V  Y +D        S N +IGL D+    +S  ++      G     F+ +L    +IP  GFPSL+VL +   E  KV +NCFG+AS+Y T++L L   P LPP   LA  VL RS ++NWP+MHE +VV ISD ++E R  +V G         + V   +  +  +W  ++   Q  Y+ G G+PGSGG+DIG++++ LK  PLQGMRV P+ GAR+KVFG++EA+VP+ + LW  P+ DPRF ER  +TL +RFP  SR
Sbjct:   66 MNGKRNPWEGVNLLPFIDADLLKKTISEYCPDSKLSSAERQRNAFGNVYAYRYDSTGQDFVPSPNIQIGLPDVHGSHSSETLIEEDAVTGGGVPGFKAKLMEGTVIPYPGFPSLNVLPMAKRELIKVGLNCFGSASKYPTMMLTLNALPDLPPLEQLAQTVLERSVFVNWPMMHEGRVVAISDAEQEIR--KVNG--------TLVVKKHSAMSGQKWATQSQLMQQMYMVGNGIPGSGGIDIGEIKIRLKLLPLQGMRVVPSNGARKKVFGQQEADVPLQLALWQAPAPDPRFQERGPMTLQDRFPSNSR 366          
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA)

HSP 1 Score: 252 bits (644), Expect = 2.650e-72
Identity = 132/304 (43.42%), Postives = 180/304 (59.21%), Query Frame = 1
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVEYFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFP 912
            MNGKRNPWE VN+LPFID + L++++ + CP   L+  E  RN  G+V  Y  DP  +    S N +IGL DI +C +   I   +      FRP L     IP  GFPSL+VL + S+E   V +N FG  S+YAT +L LK    LP A+ LA   LG+S ++NWP+MHE++VV +SD   E R          K K + KV  FT     RW  ++      Y  G  +PGSGGV+IG +Q+  K  PLQGM+ +P  G+ +K+FGKEEA++P+ M LW  P+ DPRF+ER  +T+ +RFP
Sbjct:  571 MNGKRNPWEGVNILPFIDVHLLKSSISKYCPDEVLTADERNRNRLGKVYLYTFDPASNDMVPSFNKDIGLPDIQKCNSRVDIFEENDSTDISFRPTLVPGTQIPYPGFPSLNVLPLVSIELIPVGLNIFGMPSKYATTMLTLKPMGTLPAANDLADHFLGKSLFINWPMMHESRVVAVSDAVCEVR----------KVKKKKKVRWFTPPETERWETESTTMAEQYANGARIPGSGGVNIGDIQIRFKVVPLQGMKTNPQDGSSKKLFGKEEADIPLQMALWEAPAPDPRFIERGPMTIKDRFP 864          
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA)

HSP 1 Score: 248 bits (632), Expect = 2.050e-71
Identity = 132/308 (42.86%), Postives = 178/308 (57.79%), Query Frame = 1
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVEYFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFPLGSR 924
            MNGKRNPWE VN+LPFID   L+  + + CP +AL+  E  RN  G+V  Y +D  V+    SCN +IGL +I +C +   I+         F+PEL     IP  GFPSL+VL +  VE R   VNCFG  S+Y  ++L +   P +P A  LA  ++GR+ ++NWP+MHEA+VV +SD   E R          K K + K    +     RW   +   +  Y+ G   PGSGG+ IG VQ+ LK  PLQGM+  P  G+ +K+FGKEEA+VP+ M L+S P+ DPRFVE   + L ERFP   R
Sbjct:  567 MNGKRNPWEGVNILPFIDGNLLKQTIAKHCPDSALTADERHRNRVGKVYCYTYDAAVNDTVPSCNRDIGLPNIVKCNSRVDIIENLSVSNISFKPELVPGTKIPYPGFPSLNVLPIEHVELRNAGVNCFGFPSKYPNMILTMHTLPQMPGAVQLAENLIGRNIFVNWPMMHEAKVVAVSDSTCEVR----------KPKGKSKTRNLSPPEVERWNSMSEMMKEQYVAGASYPGSGGISIGDVQIRLKVVPLQGMKTSPIDGSSKKLFGKEEADVPLQMALFSSPAPDPRFVECGPMQLKERFPPKCR 864          
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Match: A0A448ZS96_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS96_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.990e-70
Identity = 133/307 (43.32%), Postives = 182/307 (59.28%), Query Frame = 1
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVEYFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKTRVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLAERFPLGS 921
            MNGK+NPWE VN+LPFI+   L   +K+  P   LS  E  RN  G +  Y  D  V+    + +  IGL DI +C +   I+P     G  F P+L     IP  GFPSL+VL + S E   + V CFG  S+Y T+VL+L + P +PP   LA  +L RS ++NWP+MHEA+V  ISDEK E  L +     GKK     K+  + +    +W  ++ E    Y+ G  VPGSGG+ I +V++ L+  PLQGM+ +P+ G+R+K FGKEEAEVP+ + LW  P+ DPRFVER  +TL +RFP  S
Sbjct:  558 MNGKKNPWEGVNLLPFIEINLLLDTIKKNAPDDMLSDAERNRNRVGDIFLYTFDATVNDTVEAPHKGIGLTDIVKCNSRVTILPQYDAEGVSFNPKLIEGTQIPYPGFPSLNVLPITSAELTPIGVKCFGFPSKYPTMVLDLHQMPDMPPVETLADNLLNRSLFINWPMMHEAKVCAISDEKGEVYLFK-----GKK-----KLKKWNKMEQDQWARESEEMVQNYLGGINVPGSGGIQIQQVKIRLRLLPLQGMKTNPSNGSRKKFFGKEEAEVPLQLALWQAPAPDPRFVERGPMTLEQRFPCDS 854          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2019.6623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME4_ECTSI3.280e-21597.405\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonucl... [more]
A0A6H5KVU6_9PHAE2.140e-10496.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PS12_9STRA4.580e-7845.60Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1UYY6_9STRA9.170e-7743.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A1Z5JKV0_FISSO4.550e-7643.375'-3' exoribonuclease 1 n=2 Tax=Fistulifera solari... [more]
K0STL9_THAOC7.490e-7544.745'-3' exoribonuclease 1 n=1 Tax=Thalassiosira ocea... [more]
A0A7S3LCK7_9STRA2.980e-7444.37Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4RC29_9STRA2.650e-7243.425'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwell... [more]
A0A7S2PSP2_9STRA2.050e-7142.86Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A448ZS96_9STRA1.990e-7043.325'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2019contigEcto-sp13_S_contig2019:9212..14465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score612.1
Seed ortholog evalue1.5e-172
Seed eggNOG ortholog2880.D7FME4
Model size927
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
Ec32 ortholog description5'-3' exoribonuclease
Ec32 orthologEc-05_001060.1
Cds size927
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2019.6623.1prot_Ecto-sp13_S_contig2019.6623.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2019 9212..14465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463014.7856276-CDS-Ecto-sp13_S_contig2019:9211..93521681463014.7856276-CDS-Ecto-sp13_S_contig2019:9211..9352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2019 9212..9352 +
1681463014.798479-CDS-Ecto-sp13_S_contig2019:10108..102091681463014.798479-CDS-Ecto-sp13_S_contig2019:10108..10209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2019 10109..10209 +
1681463014.810641-CDS-Ecto-sp13_S_contig2019:11006..111651681463014.810641-CDS-Ecto-sp13_S_contig2019:11006..11165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2019 11007..11165 +
1681463014.8266687-CDS-Ecto-sp13_S_contig2019:11480..116281681463014.8266687-CDS-Ecto-sp13_S_contig2019:11480..11628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2019 11481..11628 +
1681463014.8368561-CDS-Ecto-sp13_S_contig2019:12133..122531681463014.8368561-CDS-Ecto-sp13_S_contig2019:12133..12253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2019 12134..12253 +
1681463014.84724-CDS-Ecto-sp13_S_contig2019:13733..138621681463014.84724-CDS-Ecto-sp13_S_contig2019:13733..13862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2019 13734..13862 +
1681463014.8578277-CDS-Ecto-sp13_S_contig2019:14336..144651681463014.8578277-CDS-Ecto-sp13_S_contig2019:14336..14465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2019 14337..14465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2019.6623.1

>prot_Ecto-sp13_S_contig2019.6623.1 ID=prot_Ecto-sp13_S_contig2019.6623.1|Name=mRNA_Ecto-sp13_S_contig2019.6623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQESERNTRGQVVE
YFHDPFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHD
AIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYATLVLELKRPPVLPP
ASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRKT
RVKVNTFTEEAAGRWRLKAAEEQGAYITGRGVPGSGGVDIGKVQLMLKAR
PLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREDVTLA
ERFPLGSR*
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mRNA from alignment at Ecto-sp13_S_contig2019:9212..14465+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2019.6623.1 ID=mRNA_Ecto-sp13_S_contig2019.6623.1|Name=mRNA_Ecto-sp13_S_contig2019.6623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5254bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2019:9212..14465+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGGGAAGCGCAACCCATGGGAGGCAGTCAACGTGCTCCCTTTCAT CGACGCCTACCGCTTGCGAGCGGCCGTGAAGGAGCTGTGCCCCCCAACGG CATTGTCGCCCCAGGAGTCGGAGAGAAACACAAGGGGACAGGTGAGAAGC GTCCCCACCCCCCACCCCCCCCCCAAAAAAAAAGACATGTTTTTTTTCAA GAAAATGGTACATGTTTGAAGCATGTTTTCTAGGCCACCTTTGGTGCTTT GGTGAAGTAGGAGCGAAGGATTTACCACCGGTGACTGATCGTATGGGAAC CATGCGAGGACGCATGGTCGATGGTCTAACCGCGAAGGCATTCGAAACAT GAGTACCCCCCCTCCACGCGGCAACGGAACATGCAACTTCCGGTGTCTGG GGCTTTTTTTTTTTTTTTTTGGAAGTTTTGTGTCATCGCAGCATTTGACA GCACACAGGGGGTACGTACGTGTATCTCGCAGCTGCGTCACCCCCGCTGA AGAGACGGAAACGGACACCAGGGTTTGGGTGAAACCGACGCCCCCCCCAA AAAGAAACATGTTTTTTGGCTCAATGTGTAGATGATCAGCGTCGGTGATG TTATCGGTGTTTGAGCAATGGTGGTGATTGGAGTTCTGGTTGCTGTGACA ATGCTCGCGACGCTCGTTGTACGTATGGTTGCCGTTAGGGTTGTTTCCCA GCAGAGGAAAAAGATTCGAGCCTCGGGGCAAAGTAAAACTTTCGTACGGG GTATGGCGATTTTCCAGGGCGTCCCATTCGCATATTCGATCCGTGGAACA CCCGCATTTCTGCGGTTTTCCGCCTACTCGGGTGTCCCGCTTCGCCGATA CATGCCCTCCGAATCCCGCGTGGTTATTTCTTTATTTTTATGGCCAGGTT GTGGAGTACTTCCACGACCCTTTCGTGAGCCGCAAAGAGATGTCCTGCAA CCCGGAGATTGGGCTGGCGGATATTCCCCAGTGCACGGCATCATCGAGGT ACGTCCTGCTGTAGAGGACAATGTAGAGGAGTGGAATACCGCACTCCACA CAAGATGACACCCCCCCCCCCGGTTGATGATGTGTACGACATTTTTGACG CCATTCCATCTTTGGGAACTATCATCCTTGAACCCATCGTACCGTACTAG TCGATCCGATAGTACTTATTTCATGTTGTGGCTTGTGTTGAGCCGTAGGA ACATCGTCACCTTTTGGGTGTGGTATTTCGGGGACCGGGGGACGTTCTCT TGTCAGCGCATCATGCCGTAGTCGGTAGACCATGGGCCTACCTCGGCATG CCTACAATGCCAGGACGGAGCGACGTGGTGCCCGTTGATCGCGGACCCAG GCTATGGTTGTACGTTCCAATAGGATGAACCACGTCATCCTGTTTGCGTT GGCCGTGCCAAACCAGACATGCCATGGGTTGAAAATGCCGCGGGGTGCGG TAGTCTTGCGTCGAGCGTTGCGTCTCGTTGGCTGCGGCTTGTTGCGCTTG GTCTGTGGCCGGTGTGTTCCGCCGCACGAGCTTATCCGTTTAATGTCTTG TTCTGCTTTCTTTTGGTTCTGGCTGACCCCTTGCCTTGTTTTTTTTTGTT GTTTGTCAGCACTACTCCTGTAGATGATTTTTTTTTTTCTTGGTCTTTTC CACGTTTTCTGTTGTTTCTGTCCACTTCCTGGTTATTTCGTGTGTCACGT TACTTACTTCTCTACAGCAGTTTCCCCGTTCTCGTGGTGTTTCAACACTT TCTTTCGTCAATCACGATTTGTTTTCTTTTTCTTTGCTTCCGTAGGATTG TGCCATTCTCCATCGAGCCAGGGGAGTGCTTCCGGCCGGAGCTTCCCCAC GACGCCATCATCCCGTCCGCGGGTTTTCCCAGCCTGCACGTGCTTACCGT CGGTTCCGTGGAAGAGCGGAAGGTTCCGGTAAACTGCTTCGGAACGGCGT CCAGGTACAACATGGATTGCTTCTTCCCAACCACGATGTATAGTTATTGA TCATTTTTTTGCTGTACGACGAAGAAAGTATTTTTTTCCTGCGAGCTTGA TCACGTCTCACTCAAAACCCCGAGACAATTCAGAACATCAAGACAGTTCG ATGCATGCGTAGAGGACCGATTTTGTCGCCCCTCGTGTAAACCACCATGT TGTTACTGTTTTTGACACCATCATTAGGTCCGCGACGCTGCAGTCTCGTC AGAGCTGAAGGATAAAAAATCCCTTTCTGTGCGACTTTGTTTTCCGCTGT TTGTGTCAACATCAATCAGGTACGCGACGCTAGTCCTAGAGCTGAAGCGC CCCCCGGTGCTGCCCCCGGCGTCTGCGCTTGCGGGGAAGGTTCTGGGGAG GTCGGCGTACCTCAACTGGCCTCTCATGCACGAGGCTCAGGTGGTCGGCA TCAGCGATGAAAAGGAGGTTTGTACAGCAGCAGCAGCAGCAGCAGCAGCA GCAGTGGCAGCCGATTGATATATATGTACCGCCGTTTGCATACGTAATAT ACCACACACCCCCTGGACCAATGGTTTGAAAAACTCGATTTCTCTGTTCG GCGACGGTGCCTAGAACGAAGCGGTTGGAACACGGCATAAAACGCGTTGT GAAAACGTCTTGTGTCCCGTCTCACTGTTTGGGTACGGTTGGTCTGTGAC TACGGAAGGCGTCGGTTGGGCCGGTACGGGTGTTGGCAGGCGGTGCTGGG AAGAGACTGGCACGGTTGGTGTTGTGAACGGTTGGTGTTGTGAAGACGAG AACAACTGTAACGGTCAACGACAGTGCAGCAGCGACAACAACAACAACAA CAACAACAACAACAACAACAACAACAACAATCAACCTACTGAGCGGAGAC CGGAACGTTTAACGTTTCTTCGTGTAAAGACGACAACAACAAGCAACAAC AAATCGACCGTCGTGCGCGCAGGAGTACCGCCTGGAGGAAGTCAAGGGCG GGGGGGGGAAGAAGCGCAAGACGAGGGTAAAGGTCAACACCTTCACCGAA GAAGCTGCGGGCCGCTGGCGCCTAAAGGCCGCAGAAGAGCAAGTGAGTTG TCGTTGCTGTTGTCTTTACATGAACAACCGTTCCGTTATCTGTGTCCAGT ACCTTATTCTGTCCGTACTAGTCTCAACACTTGACGGGGTCGATTCCAGT GGCCACAGGCTAACTTACCCTACAAAATGGTGTACGAAAATGAAAAGGAT CCATAAGGTCCGCAAGCCAATGGAAGTTAACGGTAGATAGTCTAGGCCAC TCCGCTCGCCTCTACACGCTTTGCGTGTACAACTGGAAAAAGGACGCGTC GTCACCCGCTATCCATACCCCTCCCCGCATCATAGCGACCTGCGCCTCCA TGCGTTTTTCATGTATCGGTAAGAATTGTTGCATGGTACTGCAACCACAA AAACGGAATATGGCTGTGTGTGTACTACGTCATTTGGCCTATTTTTTGTT ATTTTTGTCGTGAGGTTTACACGTGTGTTGTGTGCATAGCAACCTGTGAA TGCCCTGCCTTGTCTCCTCGGACAGCAGTGCTTGCTGTGGCAGGCCTTGC TTTCTCTGGTAGACTCAACAACAGGGGGAAAGGCTTCTCCATGCAGGGAG GGGCCGTTAAGGCACCATCCCCTTCAGATAGAGGGAGTTGCAGCATTCGC CACAACGTGTTGAAGCTCGAAAACGATCAGGGTGCCTACTGTACATCGTA CCGAACAGTATCGTGTCCTGCACGTATCTCACTCCTCTTGCTTCTTGCTA CCCAAGCGTGTCCCTTCCGCCTTACCCTACATACCACTCCTTTGCTTGTG GAACCTGAAAACGAAAAGGGTGCCTACACCATGTGTACCCTTTCGTGTCC TGCATGTCTCGCCCCTCTTGCTACCCTAGCGTGTACCTCCTTCACTCTCC GGCTTAGCCCACATCCGCCTTTCGCTTGTGGAAACTCAAAAACGAAAAAT AAAAATTCAAAGCTCGCCTACACCTTGTTTTGCCGCGCTTGGTACCTTAT CCTGTCTACCACACCTCCTTCGCTCTCCGCCTTACCCCACATACCCCTTA GTTGTGAAAGCTCGCAACCGAAAAGAGCGCCTGTATCATACCTCATCGTG TCCTACACATACCGTGTATGAAACAAGATAACACACCCCCTGTCGCGATT TTCGAAGCTCCATCACTCCACGACGAAGAGGATGCGTAAACGAAATGATA CATAGTGGAAATGCTCTTGACGAGACGGTTCCAATGTTACCATTTTCGGC GCTGTGACTCTTCCTGTTGTTGAGAGATCGAGCTTTGAACATCGGCCAAG GGGGGGTGTTATCTTGTGTCATATACTGTACGTAGCATGTTCCACCTTCG CTCTCCGCCTTACCCCACGTACCACTTTCTTGTGAAAACCTCGAAACCGA AAGGGTGCCTACACTGGTATACCTCATCGTGTCCTACGTATCTCGACCCT CTTGCTACCCTAGCGCATGCCCCCGCCTTATCCTACACCCCCCTTTGTTG TGAAAAACTTGAAACCGAACAGGGGGCGTACATCACCGGAAGAGGCGTGC CGGGCAGCGGGGGCGTCGACATCGGCAAGGTTCAGCTCATGCTCAAGGCG CGTCCCCTCCAAGGCATGAGGGTCGACCCGGCCACAGGCGCGAGACGCAA GGTCAGTGAGCCCGCACCCTTTGTTTTGCTTTTTGGACCGCCTACACTAA AAGAAGAAGGACACGAGTATATGGTATTTACTAAGAAAATATAAAGTTTA CTCGACAGGGGGCACGCAGACCCTAACCGTAACGCCAACTTAGCCGATTC TACGCTTTATCCAGAATGCTTACCAAAGAAAACATGTGTAGACTATTGTC TTTTTTTTTCGAACACTGGCCGTTTGACTACAGAGTGGCGGCTACGATAC AAGAGAGGGTTGGGCAAGCCGAATCGTCGAGTTGTGACCGACTTTCTTCT CCCGTACAGCAGCCGGCTGTGGGCTGGTCCTGCTGCCAGGTGGCACATAT TTTCATCTTGCGTCACCCCTATTGTGCCATTTATTTTTACTTCCACGCAT GACTTTCCACATGCTTCGCAAACACGGTGGGGCCGTTTTCACGTGGCTTG TCATTGAAACACTTTCTTTCATCAGGTGTTTGGTAAGGAGGAGGCGGAGG TGCCGGTGCACATGGTCCTATGGTCGTGCCCATCTGAAGACCCTCGCTTC GTGGAGAGGGAGGACGTCACTCTCGCAGAACGTTTTCCGCTCGGTAGTCG GTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2019:9212..14465+

>mRNA_Ecto-sp13_S_contig2019.6623.1 ID=mRNA_Ecto-sp13_S_contig2019.6623.1|Name=mRNA_Ecto-sp13_S_contig2019.6623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2019:9212..14465+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGGGAAGCGCAACCCATGGGAGGCAGTCAACGTGCTCCCTTTCAT
CGACGCCTACCGCTTGCGAGCGGCCGTGAAGGAGCTGTGCCCCCCAACGG
CATTGTCGCCCCAGGAGTCGGAGAGAAACACAAGGGGACAGGTTGTGGAG
TACTTCCACGACCCTTTCGTGAGCCGCAAAGAGATGTCCTGCAACCCGGA
GATTGGGCTGGCGGATATTCCCCAGTGCACGGCATCATCGAGGATTGTGC
CATTCTCCATCGAGCCAGGGGAGTGCTTCCGGCCGGAGCTTCCCCACGAC
GCCATCATCCCGTCCGCGGGTTTTCCCAGCCTGCACGTGCTTACCGTCGG
TTCCGTGGAAGAGCGGAAGGTTCCGGTAAACTGCTTCGGAACGGCGTCCA
GGTACGCGACGCTAGTCCTAGAGCTGAAGCGCCCCCCGGTGCTGCCCCCG
GCGTCTGCGCTTGCGGGGAAGGTTCTGGGGAGGTCGGCGTACCTCAACTG
GCCTCTCATGCACGAGGCTCAGGTGGTCGGCATCAGCGATGAAAAGGAGG
AGTACCGCCTGGAGGAAGTCAAGGGCGGGGGGGGGAAGAAGCGCAAGACG
AGGGTAAAGGTCAACACCTTCACCGAAGAAGCTGCGGGCCGCTGGCGCCT
AAAGGCCGCAGAAGAGCAAGGGGCGTACATCACCGGAAGAGGCGTGCCGG
GCAGCGGGGGCGTCGACATCGGCAAGGTTCAGCTCATGCTCAAGGCGCGT
CCCCTCCAAGGCATGAGGGTCGACCCGGCCACAGGCGCGAGACGCAAGGT
GTTTGGTAAGGAGGAGGCGGAGGTGCCGGTGCACATGGTCCTATGGTCGT
GCCCATCTGAAGACCCTCGCTTCGTGGAGAGGGAGGACGTCACTCTCGCA
GAACGTTTTCCGCTCGGTAGTCGGTGA
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