mRNA_Ecto-sp13_S_contig20187.6621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20187.6621.1
Unique NamemRNA_Ecto-sp13_S_contig20187.6621.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20187.6621.1 vs. uniprot
Match: A0A6H5KTV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV5_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 6.910e-34
Identity = 79/96 (82.29%), Postives = 81/96 (84.38%), Query Frame = 2 
Query:    2 ELYVAVVAFMPAAGIAQ-----------GLQLLVLGPVGRNLMGLAPPTGLNDDGGDGGGGTNAQGAARFALATAATGHAVIAVALKLLEERTGGA 256
            ELYVAVVAFMPAAGIAQ           GLQLL+LGPVGRNLMGLAPPTG N+DG   GGGTNAQGAARFALATAATGHAVIAVALKLLEERTGGA
Sbjct:  179 ELYVAVVAFMPAAGIAQASQGAGWKEIKGLQLLILGPVGRNLMGLAPPTGHNNDGS--GGGTNAQGAARFALATAATGHAVIAVALKLLEERTGGA 272
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20187.6621.1 vs. uniprot
Match: D8LKN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN2_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 3.650e-22
Identity = 61/85 (71.76%), Postives = 62/85 (72.94%), Query Frame = 2 
Query:    2 ELYVAVVAFMPAAGIAQGLQLLVLGPVGRNLMGLAPPTGLNDDGGDGGGGTNAQGAARFALAT-AATGHAVIAVALKLLEERTGG 253
            ELYVAVVAFMPAAGIAQGLQLL+LGPVGRNLMGLAPPTG ND G                    AATGHAVI VALKLLEERTGG
Sbjct:  226 ELYVAVVAFMPAAGIAQGLQLLILGPVGRNLMGLAPPTGHNDGGXXXXXXXXXXXXXXXXXXXXAATGHAVITVALKLLEERTGG 310
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20187.6621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTV5_9PHAE6.910e-3482.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKN2_ECTSI3.650e-2271.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20187contigEcto-sp13_S_contig20187:350..970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size270
Hectar predicted targeting categoryother localisation
Exons2
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463014.57384-CDS-Ecto-sp13_S_contig20187:349..5651681463014.57384-CDS-Ecto-sp13_S_contig20187:349..565Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20187 350..565 -
1681463014.5875614-CDS-Ecto-sp13_S_contig20187:918..9421681463014.5875614-CDS-Ecto-sp13_S_contig20187:918..942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20187 919..942 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463014.5977342-UTR-Ecto-sp13_S_contig20187:942..9701681463014.5977342-UTR-Ecto-sp13_S_contig20187:942..970Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20187 943..970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20187.6621.1prot_Ecto-sp13_S_contig20187.6621.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20187 350..942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20187.6621.1

>prot_Ecto-sp13_S_contig20187.6621.1 ID=prot_Ecto-sp13_S_contig20187.6621.1|Name=mRNA_Ecto-sp13_S_contig20187.6621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MPAAGIAQGLQLLVLGPVGRNLMGLAPPTGLNDDGGDGGGGTNAQGAARF
ALATAATGHAVIAVALKLLEERTGGAGGSG
back to top

mRNA from alignment at Ecto-sp13_S_contig20187:350..970-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20187.6621.1 ID=mRNA_Ecto-sp13_S_contig20187.6621.1|Name=mRNA_Ecto-sp13_S_contig20187.6621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20187:350..970- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGCTGTACGTGGCCGTGGTGGCTTTCATGCCGGCGGCCGGGATCGCTC
AGGCGAGTCAGGGGGCGGGGTGGAAAGAGAAGAAAGTGATAGTTTGTTTC
GCCATGTTGTTGTTCCGTGTTTTTCGTTGTGGGCGCGAGGGCGTGTACAA
CGCACGGGCTTTTTTGTAGGCCGCCATAAGTTACACGTGTAGCAGGCACA
GCGGTGCAAAATTTCGGCGAAAAGAGCGAAGGGAATGAATGACACATGCG
GAGTTTCCCCAAAAGGCACGGGATAAAATAATCGACCGAACAAATTTTAT
AAACATCCCAAACAACTGACAACAAGCGCACGCCTTGTGCGAATCTCCCT
CCCCTCGCCGCCCTTCCCGTCTCTGCCGAACTCGTCGGGACACCAAACAC
AACAGGGGCTGCAGCTGCTGGTCCTGGGTCCGGTGGGGAGAAACCTCATG
GGTCTTGCGCCGCCTACCGGGCTCAACGACGATGGCGGCGACGGTGGCGG
CGGCACGAACGCGCAAGGCGCCGCCCGTTTCGCGCTTGCGACCGCGGCGA
CCGGTCACGCCGTCATCGCCGTCGCCCTCAAGCTGCTCGAGGAACGCACC
GGCGGTGCTGGTGGTAGCGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20187:350..970-

>mRNA_Ecto-sp13_S_contig20187.6621.1 ID=mRNA_Ecto-sp13_S_contig20187.6621.1|Name=mRNA_Ecto-sp13_S_contig20187.6621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20187:350..970- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCGGCCGGGATCGCTCAGGGGCTGCAGCTGCTGGTCCTGGGTCC
GGTGGGGAGAAACCTCATGGGTCTTGCGCCGCCTACCGGGCTCAACGACG
ATGGCGGCGACGGTGGCGGCGGCACGAACGCGCAAGGCGCCGCCCGTTTC
GCGCTTGCGACCGCGGCGACCGGTCACGCCGTCATCGCCGTCGCCCTCAA
GCTGCTCGAGGAACGCACCGGCGGTGCTGGTGGTAGCGGC
back to top