mRNA_Ecto-sp13_S_contig20179.6617.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20179.6617.1
Unique NamemRNA_Ecto-sp13_S_contig20179.6617.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20179.6617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20179contigEcto-sp13_S_contig20179:2200..2839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size313
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463014.0543969-UTR-Ecto-sp13_S_contig20179:2199..23151681463014.0543969-UTR-Ecto-sp13_S_contig20179:2199..2315Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20179 2200..2315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463014.0682974-CDS-Ecto-sp13_S_contig20179:2315..24831681463014.0682974-CDS-Ecto-sp13_S_contig20179:2315..2483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20179 2316..2483 -
1681463014.0786624-CDS-Ecto-sp13_S_contig20179:2812..28391681463014.0786624-CDS-Ecto-sp13_S_contig20179:2812..2839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20179 2813..2839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20179.6617.1prot_Ecto-sp13_S_contig20179.6617.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20179 2316..2839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20179.6617.1

>prot_Ecto-sp13_S_contig20179.6617.1 ID=prot_Ecto-sp13_S_contig20179.6617.1|Name=mRNA_Ecto-sp13_S_contig20179.6617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
LSRNRGFCKKTRKNLSADETTSALDQLLARSTNLEQYFRPEEEYTRGKDS
TPAPQRVGVQKVTD*
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mRNA from alignment at Ecto-sp13_S_contig20179:2200..2839-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20179.6617.1 ID=mRNA_Ecto-sp13_S_contig20179.6617.1|Name=mRNA_Ecto-sp13_S_contig20179.6617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=640bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20179:2200..2839- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTCGAGAAATCGTGGATTTTGCAAGGTGAAGTGTCCCCCGCAACGATG
GTAATAGGCCCATAACTTGTTATTGAGAAGGAACCAACCGCTGTTAAGAG
GCTTATTCGAACGCTGCTGGCTAGAGCTTTCCAACGCATATTTGTTTGTC
GCCCAAATCGTTTGGGTTCCCTCTTTTTTTAATTACACCGCCCCAAAATC
GGGGGACAACCGGTGGAACTGTACCTTGAGCCGTCCAACGAAGGCTAGCA
GCAGTGAAAAAGTGCACCTTCTCGGTGGACTAACTTCCCATCATATCTTC
GCCATGCCGTCGACTGCTGGTGTTGCTGGCGCTGCTGGTGCTCTGGTGCC
AACAAGAAAACACGGAAAAACTTGTCCGCAGACGAGACGACGTCAGCTCT
CGATCAACTTCTTGCGCGCAGCACCAACTTGGAGCAATATTTTCGTCCAG
AGGAAGAATACACTAGGGGGAAGGATAGCACCCCCGCGCCCCAAAGGGTT
GGTGTTCAGAAGGTGACGGATTAATATGGGGACGATAATATTGCAGATGG
CATACGAACGCACAGCCACAGTCCCGTGACGTCTCTGACCACACAAACCC
ATGGGCTAGAGTTCGTTCGCTTTCGAACACTCTTTGGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20179:2200..2839-

>mRNA_Ecto-sp13_S_contig20179.6617.1 ID=mRNA_Ecto-sp13_S_contig20179.6617.1|Name=mRNA_Ecto-sp13_S_contig20179.6617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20179:2200..2839- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTCGAGAAATCGTGGATTTTGCAAGAAAACACGGAAAAACTTGTCCGC
AGACGAGACGACGTCAGCTCTCGATCAACTTCTTGCGCGCAGCACCAACT
TGGAGCAATATTTTCGTCCAGAGGAAGAATACACTAGGGGGAAGGATAGC
ACCCCCGCGCCCCAAAGGGTTGGTGTTCAGAAGGTGACGGATTAA
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