mRNA_Ecto-sp13_S_contig20175.6615.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20175.6615.1
Unique NamemRNA_Ecto-sp13_S_contig20175.6615.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20175.6615.1 vs. uniprot
Match: A0A7S3UVR8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVR8_HETAK)

HSP 1 Score: 45.1 bits (105), Expect = 6.650e-5
Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 1 
Query:    1 DVVRWLLDNGVDRDKPCYYGQKPIDVIGQC 90
            +VVRWLLDNGVDR    Y  Q  +D +GQC
Sbjct:   70 EVVRWLLDNGVDRAARGYCAQTALDAVGQC 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20175.6615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UVR8_HETAK6.650e-560.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20175contigEcto-sp13_S_contig20175:1981..2082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size102
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size102
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463014.0225613-CDS-Ecto-sp13_S_contig20175:1980..20821681463014.0225613-CDS-Ecto-sp13_S_contig20175:1980..2082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20175 1981..2082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20175.6615.1prot_Ecto-sp13_S_contig20175.6615.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20175 1981..2082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20175.6615.1

>prot_Ecto-sp13_S_contig20175.6615.1 ID=prot_Ecto-sp13_S_contig20175.6615.1|Name=mRNA_Ecto-sp13_S_contig20175.6615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
DVVRWLLDNGVDRDKPCYYGQKPIDVIGQCRLHA
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mRNA from alignment at Ecto-sp13_S_contig20175:1981..2082+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20175.6615.1 ID=mRNA_Ecto-sp13_S_contig20175.6615.1|Name=mRNA_Ecto-sp13_S_contig20175.6615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20175:1981..2082+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGTCGTTCGCTGGCTTTTGGACAACGGTGTTGATCGAGACAAGCCTTG
CTACTACGGTCAGAAGCCGATAGACGTTATCGGGCAGTGCCGTCTTCATG
CA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20175:1981..2082+

>mRNA_Ecto-sp13_S_contig20175.6615.1 ID=mRNA_Ecto-sp13_S_contig20175.6615.1|Name=mRNA_Ecto-sp13_S_contig20175.6615.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20175:1981..2082+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGTCGTTCGCTGGCTTTTGGACAACGGTGTTGATCGAGACAAGCCTTG
CTACTACGGTCAGAAGCCGATAGACGTTATCGGGCAGTGCCGTCTTCATG
CA
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