mRNA_Ecto-sp13_S_contig20173.6614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20173.6614.1
Unique NamemRNA_Ecto-sp13_S_contig20173.6614.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: A0A6H5L759_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L759_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 2.080e-117
Identity = 175/180 (97.22%), Postives = 176/180 (97.78%), Query Frame = 1
Query:   10 SGTDQVLTLIPGWACFFYLLYSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
            S   +VLTLIPGWACFFYLL SMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV
Sbjct:   71 SFVTKVLTLIPGWACFFYLLNSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 250          
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: A0A835YIF4_9STRA (DnaJ-like/ Sec63 translocase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIF4_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.510e-71
Identity = 115/177 (64.97%), Postives = 142/177 (80.23%), Query Frame = 1
Query:   22 QVLTLIPGWACFFYLLYSMTDDAE-IKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
            +V +L+ GWA  + LL SMT ++  +  FDP+AILGV    + + IK+ YR LSL YHPDKNP NKVAEDMFMKIAKAYEALTD  A +N+ K+GNPDGKQPM VSIALPTFLL+K++HN+ILI+YLIAMV++IPS+VAMWYA SKKYGE NVMYD+Y WYNHML + + +  + EV
Sbjct:   77 KVASLVIGWAIVYVLLSSMTGESVGLAQFDPYAILGVDVGADTKAIKRSYRNLSLKYHPDKNPGNKVAEDMFMKIAKAYEALTDPVARENYIKYGNPDGKQPMAVSIALPTFLLDKDYHNSILILYLIAMVIVIPSLVAMWYASSKKYGENNVMYDTYTWYNHMLGEGARVPQIAEV 253          
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: A0A7S2UX51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX51_9STRA)

HSP 1 Score: 226 bits (575), Expect = 5.170e-71
Identity = 108/175 (61.71%), Postives = 139/175 (79.43%), Query Frame = 1
Query:   25 VLTLIPGWACFFYLLYSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
            VL  +  W     L+ ++ +DAEI  FDP+AILGV   ++ + +KK YR LSL YHPDKNP NK AE+MFMKIAKAYEALTD+TA +NW K+GNPDGKQ +EVSI LPTFLLE+ +HN ILI+YL+ +VVIIP IV +WYA+SK++GEKNVMYD+YA++NHMLS++  +K +PE 
Sbjct:   81 VLVTVALWFVCIKLVLAVWNDAEIAVFDPYAILGVDVGSDDKVVKKAYRGLSLKYHPDKNPGNKFAEEMFMKIAKAYEALTDETAKENWEKYGNPDGKQALEVSIGLPTFLLEEGNHNMILIVYLLVLVVIIPVIVGLWYAQSKQFGEKNVMYDTYAFFNHMLSENCHLKMLPET 255          
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: A0A835YN83_9STRA (DnaJ-like/ Sec63 translocase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN83_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.670e-67
Identity = 105/177 (59.32%), Postives = 138/177 (77.97%), Query Frame = 1
Query:   22 QVLTLIPGWACFFYLLYSMTDDA-EIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
            ++ TL+ GWA F+ L+ +M   A  +  FDP+AILG+    E + IK+ YR LSL YHPDKNP +K+AEDMFMKIA+AY+ALTD  + +NW K+GNPDGKQ M VSIALPT+LL+K HHN+ILI+YLIAMVV+IPS+VA+WYA S+KYG+ N++YD+Y WYNHM+ +      +PEV
Sbjct:   77 KLATLVAGWAAFYALVSTMDGGAVSLAQFDPYAILGIDVGVEPKAIKRAYRTLSLQYHPDKNPGSKMAEDMFMKIARAYQALTDPKSKENWEKYGNPDGKQSMAVSIALPTWLLDKAHHNSILILYLIAMVVVIPSLVAVWYAGSRKYGDNNILYDTYTWYNHMVGEKMHTMQVPEV 253          
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: F0YHJ2_AURAN (J domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHJ2_AURAN)

HSP 1 Score: 211 bits (537), Expect = 4.750e-62
Identity = 102/176 (57.95%), Postives = 132/176 (75.00%), Query Frame = 1
Query:   22 QVLTLIPGWACFFYLLYSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
             +  L   WA    L+ ++T DAE+  FDPF ILGV P+ E +EI+K YR LSL YHPDKN  NK+AE+MFMK+AKAYEALTD+ A  NW ++GNPDGKQ +EVSI LPTFLL++ +H  IL IYL  +VVIIP+IVA WY  S+K+GE NVMY++Y+++ H+LS+ S  K +PEV
Sbjct:   77 HIALLTVAWAILLMLIRALTFDAELASFDPFKILGVDPNAEDKEIRKAYRKLSLEYHPDKNQGNKLAEEMFMKVAKAYEALTDEEAKKNWLEYGNPDGKQSLEVSIGLPTFLLDESNHYAILCIYLGILVVIIPAIVAAWYQHSRKFGENNVMYETYSFFLHVLSEHSTAKMLPEV 252          
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: A0A6S8WZP9_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8WZP9_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.200e-61
Identity = 101/172 (58.72%), Postives = 131/172 (76.16%), Query Frame = 1
Query:   34 LIPGWACFFYLLYSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
            L+  W     L+ ++T DAE+  FDPF ILGV  + E +EI+K YR LSL YHPDKNP NK+AE+MFMK+AKAYEALTD  A  NW ++GNPDGKQ +EVSI LPTFLL++ +H  IL IYL  +VVIIP+IVA WY  S+K+GE NVMY++Y+++ H+LS+ S +K +PEV
Sbjct:   81 LVTAWVVLLMLIRALTFDAELASFDPFKILGVASNAEDKEIRKAYRKLSLEYHPDKNPGNKIAEEMFMKVAKAYEALTDDEAKRNWLEYGNPDGKQSLEVSIGLPTFLLDEANHYAILCIYLGVLVVIIPAIVAAWYQYSRKFGENNVMYETYSFFLHVLSEHSTVKMLPEV 252          
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: A0A7S0CFH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFH9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.200e-60
Identity = 95/177 (53.67%), Postives = 132/177 (74.58%), Query Frame = 1
Query:   19 DQVLTLIPGWACFFYLLYSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
            + V+T+I    C  YL+  ++ ++EI  FDPF+IL +  + E +EIKK Y+  SL+YHPDKNP N  AE MF+K+AKAYEALTD+TA DNW K+GNPDGKQ +EVSI LPT LL+  + N IL++YL+ MVV+IP  V  +Y+ S KYGEK+VMYD+Y+W++H L++ +  K++PE 
Sbjct:   53 NVVITVILSGVCV-YLVSQLSSNSEINTFDPFSILEIDSNAEKKEIKKAYKKKSLMYHPDKNPGNSAAEAMFIKVAKAYEALTDETARDNWEKYGNPDGKQNLEVSIGLPTLLLDTSNRNIILLVYLLIMVVLIPLAVYKYYSDSSKYGEKDVMYDTYSWFHHSLNEHTMAKSIPET 228          
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: A0A7R9UDC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC6_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.080e-59
Identity = 96/168 (57.14%), Postives = 128/168 (76.19%), Query Frame = 1
Query:   46 WACFFYLLYSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
            W    YL   ++DDAEIK FDPFAILGV P+    +IKK YR +SLIYHPDKNP NK AE MFM +AKAY ALTD  A +NW K+GNPDGKQ +E+S+ LP++L++K++H+ IL++YL+A+VV+IP IV  WY++SK+YGEK VM+D+Y  +   L++   MK +PEV
Sbjct:   85 WVLLVYLAILVSDDAEIKQFDPFAILGVDPAATEAQIKKAYRKMSLIYHPDKNPGNKQAEQMFMLVAKAYGALTDPVAKENWEKYGNPDGKQSLELSVGLPSWLIDKDNHSLILVMYLVALVVVIPLIVGCWYSQSKRYGEKMVMFDTYHRFYRALNEKITMKMLPEV 252          
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: A0A1Z5KQ30_FISSO (Translocation protein SEC63 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ30_FISSO)

HSP 1 Score: 204 bits (519), Expect = 3.810e-59
Identity = 97/179 (54.19%), Postives = 134/179 (74.86%), Query Frame = 1
Query:   13 GTDQVLTLIPGWACFFYLLYSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
            G   VLTLI     F +LL S++ D ++  FDPF+IL +    + + IKK YR+LSL YHPDKNP ++ AE MFM ++KAYEALTD+TA +NW K+GNPDGKQ +EVSI LP+FLL+ ++ N +L+ YL+ MVV+IP  V  +Y+ S KYGEKNVMYD+Y+W++H L+++S +K +PEV
Sbjct:   79 GITSVLTLI-----FIWLLISVSQDGQVNSFDPFSILQIDAGADNKTIKKAYRSLSLKYHPDKNPGDRAAEAMFMMVSKAYEALTDETARENWEKYGNPDGKQSLEVSIGLPSFLLDSKNRNLVLVAYLLFMVVLIPYFVWRYYSDSSKYGEKNVMYDTYSWFHHALNENSIVKALPEV 252          
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Match: A0A7S2RLE2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLE2_9STRA)

HSP 1 Score: 201 bits (511), Expect = 9.050e-58
Identity = 90/182 (49.45%), Postives = 133/182 (73.08%), Query Frame = 1
Query:    4 NVSGTDQVLTLIPGWACFFYLLYSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKFGNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYARSKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEV 549
            N      ++ L+     F YL+  ++ D+E+  FDPF ILGV P    ++IK+ YR  SL YHPDKN D+K AE MFM +AKA++ALTD+ A +NW K+GNPDG+Q +E+SI LP+F L+ ++HN ILI YL+ +VV+IP+IV +WY+ S+++GE NVMYDSY ++  +L+++S +K++PEV
Sbjct:   70 NTCFVANLMALLCVTLIFVYLIIQVSSDSELAHFDPFKILGVDPGATEKQIKRAYRVKSLQYHPDKNKDDKNAEQMFMMVAKAHQALTDEEARENWEKYGNPDGRQALEISIGLPSFFLDTDYHNMILIFYLVCLVVVIPAIVGLWYSHSRQFGENNVMYDSYRFFQALLTETSHIKSIPEV 251          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20173.6614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L759_9PHAE2.080e-11797.22J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A835YIF4_9STRA1.510e-7164.97DnaJ-like/ Sec63 translocase subunit n=1 Tax=Tribo... [more]
A0A7S2UX51_9STRA5.170e-7161.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835YN83_9STRA1.670e-6759.32DnaJ-like/ Sec63 translocase subunit n=1 Tax=Tribo... [more]
F0YHJ2_AURAN4.750e-6257.95J domain-containing protein n=1 Tax=Aureococcus an... [more]
A0A6S8WZP9_9STRA1.200e-6158.72Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S0CFH9_9STRA1.200e-6053.67Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7R9UDC6_9STRA2.080e-5957.14Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1Z5KQ30_FISSO3.810e-5954.19Translocation protein SEC63 n=2 Tax=Fistulifera so... [more]
A0A7S2RLE2_9STRA9.050e-5849.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20173contigEcto-sp13_S_contig20173:487..3029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score358.2
Seed ortholog evalue2.3e-96
Seed eggNOG ortholog2880.D7G5A7
Model size564
KEGG koko:K09540
KEGG TC3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,map03060,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141
Exons4
EggNOG free text desc.posttranslational protein targeting to membrane, translocation
EggNOG OGsCOG1204@1,COG5407@1,KOG0721@2759,KOG0951@2759
Ec32 ortholog descriptionDnaJ-like/ Sec63 translocase subunit
Ec32 orthologEc-14_006830.1
Cds size564
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.9420245-CDS-Ecto-sp13_S_contig20173:486..6871681463013.9420245-CDS-Ecto-sp13_S_contig20173:486..687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20173 487..687 +
1681463013.9524035-CDS-Ecto-sp13_S_contig20173:1189..12641681463013.9524035-CDS-Ecto-sp13_S_contig20173:1189..1264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20173 1190..1264 +
1681463013.964068-CDS-Ecto-sp13_S_contig20173:1762..19101681463013.964068-CDS-Ecto-sp13_S_contig20173:1762..1910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20173 1763..1910 +
1681463013.9819925-CDS-Ecto-sp13_S_contig20173:2889..30291681463013.9819925-CDS-Ecto-sp13_S_contig20173:2889..3029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20173 2890..3029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20173.6614.1prot_Ecto-sp13_S_contig20173.6614.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20173 487..3029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20173.6614.1

>prot_Ecto-sp13_S_contig20173.6614.1 ID=prot_Ecto-sp13_S_contig20173.6614.1|Name=mRNA_Ecto-sp13_S_contig20173.6614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
INVSGTDQVLTLIPGWACFFYLLYSMTDDAEIKGFDPFAILGVTPSTEAR
EIKKQYRALSLIYHPDKNPDNKVAEDMFMKIAKAYEALTDQTAMDNWRKF
GNPDGKQPMEVSIALPTFLLEKEHHNTILIIYLIAMVVIIPSIVAMWYAR
SKKYGEKNVMYDSYAWYNHMLSDSSEMKNMPEVGTCE*
back to top

mRNA from alignment at Ecto-sp13_S_contig20173:487..3029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20173.6614.1 ID=mRNA_Ecto-sp13_S_contig20173.6614.1|Name=mRNA_Ecto-sp13_S_contig20173.6614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20173:487..3029+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAATGTATCGGGAACCGATCAGGTATTGACCCTGATCCCAGGGTGGGC TTGCTTCTTCTACCTGCTGTACTCCATGACTGATGACGCGGAGATCAAGG GATTCGATCCTTTCGCTATTTTGGGGGTAACGCCGTCCACGGAGGCGCGG GAGATCAAGAAGCAGTACAGGGCGCTGTCGCTCATCTATCACCCGGACAA GGTTGGTGCTTGTCCGTCACATCACTCCGGCCACTCCATCGCTCGCGAAG ACTCGGCAATGCCATTTGTATGCTCGCGTCGCGCTTGTTATGTGGTTTCT TGAGAGATCGGCGCGTCGAAAGTGGCTGGCTGCTCTATTACCGCTTGACG GCTACAGGTGATGCGCCAGCAGCATCAGGACGACGACAAGCCAAATTTGG CGTGCTTTCTGTGGGCGTTCCAGCGGTAGTTCTTGGGTACCAGAGAGGAT GACGTGACGTCGGCTACGCGTGTGGCCAAGCCCCACGGCTGTGCCATTTC TGCCAGCTGCCATGGTGAAAAGCACACGAGGACCAAACATGTTTGTTCTC CAGAGGATATGTATGACGAAATGGGAAGTGCACGGGCTGTGCTGACAGCA AGCTCTGCCGAGCATACGTTTGATGGCGATCGATCTGACGATCACTCTCT TACGTTTTGTATCGTTTCGATGATGTCGCACGTGCTTCTTCTCTCGGCGA CAGAACCCTGACAACAAGGTGGCCGAGGACATGTTTATGAAGATCGCCAA GGCTTACGAGGCACTCACCGACCAGACGGTGAGGCAAGACAAGGACTTCG GGTGATGAGAGACTCCTCCTGCTGCTTCTGTTGACTGTCACAGCTATTAT TCTGTTCGGCCGTGGAGCCGAGGAGGTGCCGGCGGGCATCTCTCTCGCCC TCTATACATCGCCTCGACTGGATGTTGACCCTTGATGCGGTTCACAGACA CCTTTTCCTTCGAAGACGTCAAGTCTCGCTGCTTTCATGTGATTTGTATT GTAGACAAATGGCGTCCGCCACGCGTGAATTCATCGCGTGGCGGATCGTG AGTGTTGTTGGATTATGCTTGCTCAGGATTGCCAGCCACGAGGGTGCCCA TTGATCCCTGCTGTGATTTCGTGATTCCGAAACTAATATAGTTATAGCCA TCCGTAGAGTGGCAACCCGACCAATTGGCGCCCGCCGTCGTTTCTGACGC TTTGACTGGCTGCCGACGTGTTACCAAGAAACTGAAAACATTGTATGGGA TGTACGCTTGAAATTTGGTTCGACAGGCAATGGACAACTGGCGAAAGTTC GGCAATCCCGACGGCAAGCAGCCCATGGAGGTGTCAATCGCTTTACCGAC CTTCTTGCTGGAGAAGGAGCACCACAACACCATCCTCATCATCTACCTCA TCGCCATGGTGGTGATCATTCCATGTGAGGAAGCAAGGCACCGTGACGAG CACCACGAGAAGCTGACCAAACAATGAGGGAACTCAAGCTAGCATAACCG ACGTGCAGAGAGTATGTAGATGTGTGCGGGTGGGTCATTCGGGCCGGTGT GCCGAGCGCTGCTGTTGCGCAAAAACCCAGCCATGAATACATGTACCAAA CTCCGCCTCCTCCGTGGTTCATTTAACTAGTCCTCGCACCCTTCTGGTTT TGAGACATGATGAGACATTACTTCGATTTCGGCGCAGTCATACCAACTGT TATTGTTCTAACATTATTACGTATGCTCGATGGTGCGGGAAGGTTTTATC GAGGGCACGCGAAATCCACGTTGACGGTCGGCGAGGAACAGGGAAGGCTG AGTGATTTTAGAAAACACACACAGCAGAACATTACAAAGAGACCGCCCTT TGGAGATGATGCAGTACGCTGTTCGAAGGCATGTATTGGAAGTCATACAG ATTGAGGCAAGCTGCGAAGAAATGACGAACAGCTTGTGTGGCCTTCCTGC TCTGTAACCGCGGCTGTTGCGTTCATCATGCCATTTTGCTATTGCCCACA GGTGCCTTCTGGCGCCCATGTTGGACATAGACGGATTCATAATGAATTTA GCGCAGGACACCTTGGGTGTCATTTTTTATTCCACTCAGGGTTGTACTTT GCAGAATTGCGTTGAAGGTTTCCGCAAGTACATACGTTTTGGTGTGGGAC CACTTGTATGGACTAACCGTGCTTAGTCTTGGTCAATCGTGATGTACCTT TGGGTGTCTTCCGTCGTGGTGCCTTTCGCTAGACATGTGCATGCAAGACT CGTCCACCGCAAGGCAGTAACGCGGAACGCCCCCACGGGCGGCTCCCTGT TTGAACCTTTCCTCTTGAAGCACCCTTCCACTGCCCCTGCCTCATTCATT TTGATGTGCACCCGTTCGTCTCCCCTTTGCCTGCTTGCACGAACGGCCGT CAGCCATCGTGGCCATGTGGTACGCGCGGTCCAAGAAGTACGGCGAGAAG AACGTCATGTACGATAGCTACGCCTGGTACAACCACATGCTCAGCGACTC GTCCGAGATGAAGAACATGCCGGAGGTAGGTACATGCGAGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20173:487..3029+

>mRNA_Ecto-sp13_S_contig20173.6614.1 ID=mRNA_Ecto-sp13_S_contig20173.6614.1|Name=mRNA_Ecto-sp13_S_contig20173.6614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20173:487..3029+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAATGTATCGGGAACCGATCAGGTATTGACCCTGATCCCAGGGTGGGC
TTGCTTCTTCTACCTGCTGTACTCCATGACTGATGACGCGGAGATCAAGG
GATTCGATCCTTTCGCTATTTTGGGGGTAACGCCGTCCACGGAGGCGCGG
GAGATCAAGAAGCAGTACAGGGCGCTGTCGCTCATCTATCACCCGGACAA
GAACCCTGACAACAAGGTGGCCGAGGACATGTTTATGAAGATCGCCAAGG
CTTACGAGGCACTCACCGACCAGACGGCAATGGACAACTGGCGAAAGTTC
GGCAATCCCGACGGCAAGCAGCCCATGGAGGTGTCAATCGCTTTACCGAC
CTTCTTGCTGGAGAAGGAGCACCACAACACCATCCTCATCATCTACCTCA
TCGCCATGGTGGTGATCATTCCATCCATCGTGGCCATGTGGTACGCGCGG
TCCAAGAAGTACGGCGAGAAGAACGTCATGTACGATAGCTACGCCTGGTA
CAACCACATGCTCAGCGACTCGTCCGAGATGAAGAACATGCCGGAGGTAG
GTACATGCGAGTAA
back to top