mRNA_Ecto-sp13_S_contig20170.6613.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20170.6613.1
Unique NamemRNA_Ecto-sp13_S_contig20170.6613.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: D8LS34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS34_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 1.480e-147
Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 1
Query:    7 GVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNKFTVKYFLNLVLVDEEDRR 639
            G  ELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNKFTVKYFLNLVLVDEEDRR
Sbjct:   73 GQIELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNKFTVKYFLNLVLVDEEDRR 283          
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: A0A836CB39_9STRA (Vacuolar protein sorting-associated protein 26-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB39_9STRA)

HSP 1 Score: 329 bits (843), Expect = 3.610e-111
Identity = 158/213 (74.18%), Postives = 186/213 (87.32%), Query Frame = 1
Query:    7 GVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQ-QEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRG-TNKFTVKYFLNLVLVDEEDRR 639
            G  ELYYDRGNHY+FSS+VRELDTA +LVGNRQ+ FDF+  +KPYESYSGLNVRLRYFVRVTI+     +TK+ +F VQN++ +EP    SLKMEVGIE+CLHIEFEYDKS YHL+DV+IGKIYFLLVRIKIKHME+A++RRE AG+G+  YNESET++KYEVMDGAP KGECVPLR+FLKPY LTPTY+   NKF+V+Y+LNLVLVDEEDRR
Sbjct:   72 GQIELYYDRGNHYKFSSLVRELDTANSLVGNRQFLFDFSNVDKPYESYSGLNVRLRYFVRVTITRNYGTITKDFEFAVQNVEPEEPVMNPSLKMEVGIEECLHIEFEYDKSKYHLRDVIIGKIYFLLVRIKIKHMELAVVRREAAGSGATVYNESETVVKYEVMDGAPVKGECVPLRLFLKPYDLTPTYKSINNKFSVRYYLNLVLVDEEDRR 284          
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: A0A7S2UYV3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYV3_9STRA)

HSP 1 Score: 298 bits (764), Expect = 3.890e-99
Identity = 144/215 (66.98%), Postives = 180/215 (83.72%), Query Frame = 1
Query:    7 GVAELYYDRGNHYEFSSVVRELDTAGALVG-NRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTIS-TRGKNVTKEMDFVVQNIQQEPEAL-DSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTN-KFTVKYFLNLVLVDEEDRR 639
            G  E++YDRGN Y+F+S+VREL+ AG + G +R Y FDF+  +KPYESYSG+NVRLRYFVRVTI+ + G N+ KE +F+VQ    E  A+ ++LKMEVGIEDCLHIEFEYDK+ YHL DV++GK++FLLVRIKIKHME+AIIRRE  GTGSNQYNE+ET+ K+E+MDGAP KGEC+P+R+FL  Y LTPTYR  N +F+V+Y+LNLVLVDEEDRR
Sbjct:   72 GQIEMFYDRGNSYDFTSIVRELEAAGVMEGGSRNYTFDFSTVDKPYESYSGINVRLRYFVRVTITRSYGSNIIKEEEFLVQTPSTEETAMTNTLKMEVGIEDCLHIEFEYDKNRYHLADVILGKVFFLLVRIKIKHMEVAIIRREACGTGSNQYNETETLTKFEIMDGAPVKGECIPVRLFLSQYNLTPTYRNVNNRFSVRYYLNLVLVDEEDRR 286          
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: A0A6S8R4Z0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8R4Z0_9STRA)

HSP 1 Score: 298 bits (763), Expect = 4.680e-99
Identity = 145/214 (67.76%), Postives = 178/214 (83.18%), Query Frame = 1
Query:    7 GVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRG--KNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRG-TNKFTVKYFLNLVLVDEEDRR 639
            G  EL++DRG +Y+F+ V+RELD  G L+G ++Y FD + AEKPYESY+GLNVRLRYFVRVT+ TRG   ++ KE +F+VQ  Q  PE    +KMEVGIE+CLHIEFEYDKS YHL DVV+GK+YFLLVRIKIKHME+A+IRRE AG G NQ+NESETI KYEVMDGAP +GECVP+R+FL+ + LTPTYRG  NKF+V+Y+LNLVLVD+E+RR
Sbjct:   70 GQIELFHDRGTYYDFTCVLRELDVPGVLMGQQRYAFDLSHAEKPYESYNGLNVRLRYFVRVTV-TRGYASSLIKEQEFIVQVSQPAPETNTPVKMEVGIEECLHIEFEYDKSKYHLADVVVGKVYFLLVRIKIKHMELAVIRREAAGAGPNQHNESETITKYEVMDGAPVRGECVPIRLFLRNFNLTPTYRGINNKFSVRYYLNLVLVDQEERR 282          
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: UPI0001CBA3F0 (vacuolar protein sorting-associated protein 26B-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA3F0)

HSP 1 Score: 293 bits (750), Expect = 8.770e-97
Identity = 141/214 (65.89%), Postives = 174/214 (81.31%), Query Frame = 1
Query:    1 YFGVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNK-FTVKYFLNLVLVDEEDRR 639
            + G  ELYYDRGNH+EF+S+V+EL   G L  +  Y FDF   EKPYESY+G NVRLRYF+RVTI+ R  +VT+EMD +V  + Q PE  +S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII+RET G+G N +NE+ETI KYE+MDGAP +GE +P+R+FL  Y LTPT R  NK F+V+Y+LNLVLVDEE+RR
Sbjct:   67 FIGQIELYYDRGNHHEFTSLVKELARPGELTQSTTYDFDFVQVEKPYESYTGANVRLRYFLRVTIAKRLTDVTREMDIIVHTLSQYPEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELAIIKRETTGSGPNTFNENETIAKYEIMDGAPVRGESIPIRLFLAGYDLTPTMRDINKKFSVRYYLNLVLVDEEERR 280          
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: W7TAJ9_9STRA (Vacuolar protein sorting-associated protein 26 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAJ9_9STRA)

HSP 1 Score: 292 bits (747), Expect = 1.480e-96
Identity = 140/213 (65.73%), Postives = 176/213 (82.63%), Query Frame = 1
Query:    7 GVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTR-GKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTN-KFTVKYFLNLVLVDEEDRR 639
            G  E+  DRG+ +EF+++V+ELDTAG L  ++QY FDF   +KPY+SY+GLNVRLRYF++VT++ +   N+  E + VVQ+  Q PE+  S+KMEVGIEDCLHIEFEYDK  YHL+DV++GKIYFLLVRIKIKHME+AIIRRE+AGTG+N  NESET+ K+EVMDGAP KGEC+PLR+FL   ALTPTYR  N +F+V+Y+LNLVLVDEEDRR
Sbjct:   74 GAIEMLQDRGSVHEFTNLVKELDTAGVLFSDKQYTFDFATVDKPYDSYTGLNVRLRYFLKVTVTRQYAPNLVAEQELVVQSTTQVPESHSSIKMEVGIEDCLHIEFEYDKQKYHLKDVILGKIYFLLVRIKIKHMELAIIRRESAGTGANVMNESETLCKFEVMDGAPVKGECIPLRLFLSSIALTPTYRSVNNRFSVRYYLNLVLVDEEDRR 286          
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: A0A6A7GAN3_9CRUS (Membrane coat complex Retromer (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GAN3_9CRUS)

HSP 1 Score: 291 bits (746), Expect = 5.070e-96
Identity = 136/213 (63.85%), Postives = 173/213 (81.22%), Query Frame = 1
Query:    7 GVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTIS-TRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGT-NKFTVKYFLNLVLVDEEDRR 639
            G  EL YDRGNHY F+S++RELD  G L   + + F+F   EK YE+Y+G+NVRLRYFVRV IS + G N+ KE+DF VQN++ +PE  ++LKMEVGIEDCLHIEFEYDKS YHL DV++GKIYFLLVRIKIKHME+ I++RE+ G G N YNE+E + K+E+MDGAP +GEC+P+R+FL P+ LTPT++   NKF+VKY+LNLVLVDEE+RR
Sbjct:   91 GQVELAYDRGNHYVFTSLIRELDAPGILTAEKTFSFEFANVEKQYETYNGVNVRLRYFVRVKISRSYGSNIKKEIDFAVQNVRPDPEINNTLKMEVGIEDCLHIEFEYDKSKYHLDDVIVGKIYFLLVRIKIKHMELQILKRESTGNGPNLYNETEIMTKFEIMDGAPVRGECIPIRLFLSPFDLTPTFKNVHNKFSVKYYLNLVLVDEEERR 303          
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: UPI001B88904D (vacuolar protein sorting-associated protein 26B-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88904D)

HSP 1 Score: 291 bits (744), Expect = 1.550e-95
Identity = 140/212 (66.04%), Postives = 169/212 (79.72%), Query Frame = 1
Query:    7 GVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNK-FTVKYFLNLVLVDEEDRR 639
            G  ELYYDRGNH+EF+S+V+EL   G L  N  Y F+F   EKPYESY+G NVRLRYF+RVTI  R  +V KE D VV  + Q P+  +S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+ II+RET GTG N +NE+ETI KYE+MDGAP +GE +P+R+FL  Y LTPT R  NK F+V+Y+LNLVLVDEE+RR
Sbjct:   72 GQIELYYDRGNHHEFTSLVKELARPGELTQNASYNFEFQQVEKPYESYTGANVRLRYFLRVTIVKRLTDVVKEQDIVVHTLSQYPDMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEVQIIKRETTGTGPNTFNENETIAKYEIMDGAPVRGESIPIRLFLSGYELTPTMRDINKKFSVRYYLNLVLVDEEERR 283          
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: A0A8B8EXW5_CRAVI (vacuolar protein sorting-associated protein 26B-like n=4 Tax=Crassostrea TaxID=6564 RepID=A0A8B8EXW5_CRAVI)

HSP 1 Score: 290 bits (741), Expect = 3.760e-95
Identity = 137/214 (64.02%), Postives = 169/214 (78.97%), Query Frame = 1
Query:    1 YFGVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNK-FTVKYFLNLVLVDEEDRR 639
            + G  ELYYDRGNH+EF+S+V+EL   G + GN  + F+F   EKPYESY+G NVRLRYF+RVT+  R  +  KE D +V  + Q PE   S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+ II+RE+ GTG N YNE+ETI KYE+MDGAP +GE +P+R+FL  Y LTPT R  NK F+V+Y+LNLVLVDEE+RR
Sbjct:   70 FIGQIELYYDRGNHHEFTSLVKELARPGEVTGNTTFAFEFQQVEKPYESYTGANVRLRYFLRVTVVKRLSDTVKEQDIIVHTLSQYPEMNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIQIIKRESTGTGPNTYNENETIAKYEIMDGAPVRGESIPIRLFLSGYELTPTMRDINKKFSVRYYLNLVLVDEEERR 283          
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Match: A0A0N7ZCR9_SCYOL (Uncharacterized protein n=4 Tax=Portunidae TaxID=6757 RepID=A0A0N7ZCR9_SCYOL)

HSP 1 Score: 293 bits (749), Expect = 4.640e-95
Identity = 141/212 (66.51%), Postives = 171/212 (80.66%), Query Frame = 1
Query:    7 GVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESYSGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIEDCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGSNQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNK-FTVKYFLNLVLVDEEDRR 639
            G  ELYYDRGNH+EF+S+V+EL   G L  N  + F+FN  EKPYESYSG NVRLRYF+RVTI  R  ++T+EMD +V  +   PE  +S+KMEVGIEDCLHIEFEY+KS YHL+DV++GKIYFLLVRIKIKHME+AII+RET G+G N +NE+ETI KYE+MDGAP +GE +P+RVFL  Y LTPT R  NK F+V+Y LNLVLVDEE+RR
Sbjct:   49 GQIELYYDRGNHHEFTSLVKELARPGELTHNTSFEFEFNQVEKPYESYSGTNVRLRYFLRVTIVRRLSDITREMDLLVHTLSSYPEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGSGPNTFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLTPTMRDINKKFSVRYHLNLVLVDEEERR 260          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20170.6613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS34_ECTSI1.480e-14799.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CB39_9STRA3.610e-11174.18Vacuolar protein sorting-associated protein 26-dom... [more]
A0A7S2UYV3_9STRA3.890e-9966.98Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S8R4Z0_9STRA4.680e-9967.76Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI0001CBA3F08.770e-9765.89vacuolar protein sorting-associated protein 26B-li... [more]
W7TAJ9_9STRA1.480e-9665.73Vacuolar protein sorting-associated protein 26 n=2... [more]
A0A6A7GAN3_9CRUS5.070e-9663.85Membrane coat complex Retromer (Fragment) n=2 Tax=... [more]
UPI001B88904D1.550e-9566.04vacuolar protein sorting-associated protein 26B-li... [more]
A0A8B8EXW5_CRAVI3.760e-9564.02vacuolar protein sorting-associated protein 26B-li... [more]
A0A0N7ZCR9_SCYOL4.640e-9566.51Uncharacterized protein n=4 Tax=Portunidae TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20170contigEcto-sp13_S_contig20170:1311..3164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score421.0
Seed ortholog evalue3.3e-115
Seed eggNOG ortholog2880.D8LS34
Preferred nameVPS26B
Model size642
KEGG rclassRC00055,RC00523
KEGG koko:K01876,ko:K18466
KEGG ReactionR05577
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008104,GO:0008150,GO:0008565,GO:0009894,GO:0009966,GO:0009987,GO:0010008,GO:0010033,GO:0010506,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016055,GO:0016192,GO:0016197,GO:0016241,GO:0016482,GO:0016787,GO:0019222,GO:0023051,GO:0023052,GO:0030111,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034097,GO:0034341,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045087,GO:0045184,GO:0045185,GO:0045335,GO:0046907,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071702,GO:0071705,GO:0097422,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0198738,GO:1905114,GO:1990126
Exons5
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsKOG3063@1,KOG3063@2759
EC6.1.1.12
Cds size642
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.8594263-CDS-Ecto-sp13_S_contig20170:1310..14381681463013.8594263-CDS-Ecto-sp13_S_contig20170:1310..1438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20170 1311..1438 -
1681463013.870034-CDS-Ecto-sp13_S_contig20170:1754..18991681463013.870034-CDS-Ecto-sp13_S_contig20170:1754..1899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20170 1755..1899 -
1681463013.882182-CDS-Ecto-sp13_S_contig20170:2180..22941681463013.882182-CDS-Ecto-sp13_S_contig20170:2180..2294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20170 2181..2294 -
1681463013.896671-CDS-Ecto-sp13_S_contig20170:2532..26851681463013.896671-CDS-Ecto-sp13_S_contig20170:2532..2685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20170 2533..2685 -
1681463013.9068933-CDS-Ecto-sp13_S_contig20170:3062..31641681463013.9068933-CDS-Ecto-sp13_S_contig20170:3062..3164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20170 3063..3164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20170.6613.1prot_Ecto-sp13_S_contig20170.6613.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20170 1311..3164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20170.6613.1

>prot_Ecto-sp13_S_contig20170.6613.1 ID=prot_Ecto-sp13_S_contig20170.6613.1|Name=mRNA_Ecto-sp13_S_contig20170.6613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
YFGVAELYYDRGNHYEFSSVVRELDTAGALVGNRQYRFDFNLAEKPYESY
SGLNVRLRYFVRVTISTRGKNVTKEMDFVVQNIQQEPEALDSLKMEVGIE
DCLHIEFEYDKSAYHLQDVVIGKIYFLLVRIKIKHMEMAIIRRETAGTGS
NQYNESETIIKYEVMDGAPAKGECVPLRVFLKPYALTPTYRGTNKFTVKY
FLNLVLVDEEDRR*
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mRNA from alignment at Ecto-sp13_S_contig20170:1311..3164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20170.6613.1 ID=mRNA_Ecto-sp13_S_contig20170.6613.1|Name=mRNA_Ecto-sp13_S_contig20170.6613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1854bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20170:1311..3164- (Ectocarpus species13 EcNAP12_S_4_19m)
TATTTTGGTGTTGCAGAGCTGTACTATGACCGCGGCAACCACTACGAATT TTCCTCGGTCGTGCGGGAGCTGGACACCGCGGGGGCGCTGGTCGGAAATC GAGTGAGTACACCCCTTGTCGTCCGCTCAACAATCCAATCGCGTGATTGA AGTGTACCGGGCATGAGCAGCGATCGGTCGCCCCCACTCCTCTCGACAAA CACTGGTTTGATTTTAAACCATGGATCAGGTCATGAGCGCCGCGACACCT CACTTTAACCTTGTGTGAAACCACTGGCGCATTTTGTTTTCGGTACGCAT TTTGCGAACTACAAAGAACAGCATACAGGCCGTAACTCTCCTCTGCGATA CACAATATTTGGCATCGCCATCCCCCACCATCCACGTGTTGATTGAGGCA CGACTCGTGTCATTTGTCTGTCTCTATCTCCGCCTGTGTCTGCCTCTGTC TTTATGCCGCTGTTTCTCCGCCCTGGCAGCAATATCGCTTCGATTTCAAC TTGGCCGAGAAGCCGTACGAGTCGTACAGCGGCCTGAACGTAAGACTTCG GTACTTTGTGCGAGTTACCATCTCCACACGAGGGAAGAACGTCACGAAAG AAATGGACTTCGTTGTGCAGAACATCCAACAGGTATTTTGGCGGTGCGGG TACATGCTCACGTTCTGGATTGTACTTTGGGTTCTCAAGTGGACTCGGCG ATGGCTACCACCGTGCAAGAGTGTGCCACGTGTCGTGCTGTACGTCTCCT CCACTCCCTCGGCTGCTCATCGTGTTCAATTCCGATTTGTCCTCTCACAA CACGCGCTGTGTGTTCGAACCCTAACCCAAAAAACTGACGGGTTGGTGTG AAACAAACTGGCGCCTTCAGGAGCCTGAGGCGTTGGATTCGCTCAAGATG GAAGTGGGTATCGAGGACTGCCTTCACATCGAGTTCGAGTACGACAAATC AGCCTACCACTTGCAGGACGTGGTCATCGGCAAGGTGCGGTGTGCCTTGG ACAAGGAAATCAAGATCTTTGCGCCGGCAGTGACCGGGAATCGGGAATTT TGTCGAGCGCGTGTCTCACTCCCGTGAGGGTGCGTTGTTCGTGAGCGCAC CATCGTCCCACACAACCACGCCACGCTAAAAATGATGGACAGCCAGGTTT ACCCCCAGGAATTCACAACATTTACACAAAACAGTAAGATGACGCACAAG ACATCCTGTGACGCCTACGAGAATACCATGCTTTTTCGTCCACGAAATGT GCCCGAACCCCACAGATCTACTTTTTGCTTGTGCGCATCAAGATCAAGCA TATGGAGATGGCGATCATCAGAAGAGAGACGGCAGGGACGGGATCCAACC AGTACAACGAGAGTGAGACCATCATCAAGTACGAGGTCATGGACGGGGCC CCCGCCAAGGGTGAGGAGAAAATTCACCCGCAAGAGGAGTCTCACGTCAA CTCGTTCCCTCCCCTGCTCCCCCCATGCCCCTGTACTTACCGACCCGTAG ACCATTTAGCATAGAGTAATTTTTTTAGTCGGCGATTGGTGGCTCTTGCC GTTTGTTGCCAAGCTACTGCACGTTTGCCCCCTCCAGCCTTGGCATGCAG TGTTGCTGAGTACACGGAAGGGCACCAAAGGTAAATCTTGCTGTTATACG GCTGTTGCCAGGCAGATTCCACTTTGAAGTGGTACCAACTCGAAGTGATT TCTTGGTGTGAAAATCCGTCCGGCAGGGGAGTGCGTGCCACTGCGAGTGT TCCTGAAGCCATACGCGCTGACGCCGACCTACCGAGGGACCAATAAGTTC ACTGTGAAGTACTTCCTCAACCTCGTGCTGGTGGACGAGGAGGACCGCAG GTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20170:1311..3164-

>mRNA_Ecto-sp13_S_contig20170.6613.1 ID=mRNA_Ecto-sp13_S_contig20170.6613.1|Name=mRNA_Ecto-sp13_S_contig20170.6613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20170:1311..3164- (Ectocarpus species13 EcNAP12_S_4_19m)
TATTTTGGTGTTGCAGAGCTGTACTATGACCGCGGCAACCACTACGAATT
TTCCTCGGTCGTGCGGGAGCTGGACACCGCGGGGGCGCTGGTCGGAAATC
GACAATATCGCTTCGATTTCAACTTGGCCGAGAAGCCGTACGAGTCGTAC
AGCGGCCTGAACGTAAGACTTCGGTACTTTGTGCGAGTTACCATCTCCAC
ACGAGGGAAGAACGTCACGAAAGAAATGGACTTCGTTGTGCAGAACATCC
AACAGGAGCCTGAGGCGTTGGATTCGCTCAAGATGGAAGTGGGTATCGAG
GACTGCCTTCACATCGAGTTCGAGTACGACAAATCAGCCTACCACTTGCA
GGACGTGGTCATCGGCAAGATCTACTTTTTGCTTGTGCGCATCAAGATCA
AGCATATGGAGATGGCGATCATCAGAAGAGAGACGGCAGGGACGGGATCC
AACCAGTACAACGAGAGTGAGACCATCATCAAGTACGAGGTCATGGACGG
GGCCCCCGCCAAGGGGGAGTGCGTGCCACTGCGAGTGTTCCTGAAGCCAT
ACGCGCTGACGCCGACCTACCGAGGGACCAATAAGTTCACTGTGAAGTAC
TTCCTCAACCTCGTGCTGGTGGACGAGGAGGACCGCAGGTGA
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