mRNA_Ecto-sp13_S_contig2017.6612.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2017.6612.1
Unique NamemRNA_Ecto-sp13_S_contig2017.6612.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig2017.6612.1 vs. uniprot
Match: A0A6H5KNB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB2_9PHAE)

HSP 1 Score: 1037 bits (2682), Expect = 0.000e+0
Identity = 561/722 (77.70%), Postives = 589/722 (81.58%), Query Frame = 1
Query:    1 DAPYANASWSLAVAYDVGSWRGGLRQRYYFGRLVRFLAHRRSRRAALRELVTARMAKRLQAWATVLAKQKRSLVCEVKARAPAESVGAHLRFLSRTGTWEHLLLDLNQILETAVSQREQALGLLSQQVAPETRGASGQGRTTHS---------AKTLTASPNRFPRARVGSSHNNNERTSSRHTSSRQEGFPDTWADGSFAVARGAFSAEKSGRKAGGSPGRPAFRENIAGSRHNSRRARLTAESRRRAGLTEIVDERILRCLHPWIVTLLARSAVQFVPSVPHKH-----------------------------------------------------------------RIGFRMDDTNKVEALAETQLTRRYWRLLEGVSDAVLLVGAAKIEAATLAAEAGEWLLLLGFAHHLVSKGHVGLPCTLPALPRNSSIKGHTSSIQVLGMISEQANHFLAPVRRKRAENAPGLEEDTPDAQYQQQGPAATEQHGQHHQPSARLYATGPMHQGGQGQATSVPKWFSAHKTLCETCWALRTGASSAGGSKCQRCGRTHVRGFSHEISNRGGDDTADPVPWQQFSQQVKESLDLFIVHAAYACVLHPGPLNNTTVAAGLGGGLGWWNGGDTEHQAWWRAVCGGKEAAKRLRDDGCDTVGNLYTYVRGSTVGCSSSSSSLAGCGDGAPPKKVRSRTKKLRRLINDEELATKIASLLRRLMSAFEELR 1944
            DAPYANASWSLAVAYDVGSWRGGLRQRYYFGRLVRFLAHRRSR+ ALRE VTARMAKRLQAWATVLA++KRSL+CE+KARA AE VGAHLRFLSRTGTWE LLLDLNQIL+TA+SQREQA+GLLS+QVAPETRGASGQGRT H          A+T T SP+RF RARVGSS+NN++RTSS HTSS Q G PDTWADGSF VA G +SAEKSGRKAGGSPG PA REN+AGSRHNSRRARLTAE RRRAGLTEIVDERILRCLHPWIVTLLARS VQFVPSVPHKH                                                                 RIGF +DDT+KVEALAETQLTRRYWRLLEGVSDAVLLVGAAKIEAATLAAEAGEWLLLLGFAHHLVS GHVGLPCTLPALPR SSIKG TSSI+V+G++S+QAN+FL PVRRKR E AP LE D P AQ QQQGP A EQHGQHHQPSARLYATGP HQGGQGQATS PKWFSAHK+LCETCWALRTGAS AGGSKCQRCGRTHVRGFSHE S RGGD TADPVP QQFSQ VKESLDLFIVHAAYACVLHPGP NN TVA GLGGGLGWWNGGDTE QAWWRAVC GK AAKRLRDDGCDTVG LYTYVRGS VG   SSSSLAGCGDG+PPK+   RTKKLRRLIND +LATKIASLLRRLMSA EELR
Sbjct:  483 DAPYANASWSLAVAYDVGSWRGGLRQRYYFGRLVRFLAHRRSRKGALRERVTARMAKRLQAWATVLAEEKRSLICEMKARAHAEIVGAHLRFLSRTGTWERLLLDLNQILQTAMSQREQAIGLLSEQVAPETRGASGQGRTAHCESVRVDAKPARTPTDSPHRFLRARVGSSYNNHQRTSSTHTSSIQGGSPDTWADGSFPVACGEYSAEKSGRKAGGSPGHPATRENVAGSRHNSRRARLTAEFRRRAGLTEIVDERILRCLHPWIVTLLARSGVQFVPSVPHKHSVVLRFVPSMLDETVARFECNTQNSSASCRLHPAAHSPTLTPVSRSFLPWLIVARYLNIMPNVGARIGFCIDDTSKVEALAETQLTRRYWRLLEGVSDAVLLVGAAKIEAATLAAEAGEWLLLLGFAHHLVSDGHVGLPCTLPALPRKSSIKGPTSSIKVVGVMSKQANYFLGPVRRKRVEYAPRLEGDAPAAQCQQQGPVAKEQHGQHHQPSARLYATGPTHQGGQGQATSAPKWFSAHKSLCETCWALRTGASGAGGSKCQRCGRTHVRGFSHESSKRGGDVTADPVPLQQFSQ-VKESLDLFIVHAAYACVLHPGPANNATVAGGLGGGLGWWNGGDTE-QAWWRAVCRGKGAAKRLRDDGCDTVGKLYTYVRGSAVG---SSSSLAGCGDGSPPKQAIFRTKKLRRLINDGDLATKIASLLRRLMSALEELR 1199          
BLAST of mRNA_Ecto-sp13_S_contig2017.6612.1 vs. uniprot
Match: D8LN60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN60_ECTSI)

HSP 1 Score: 893 bits (2308), Expect = 4.420e-313
Identity = 499/697 (71.59%), Postives = 520/697 (74.61%), Query Frame = 1
Query:    1 DAPYANASWSLAVAYDVGSWRGGLRQRYYFGRLVRFLAHRRSRRAALRELVTARMAKRLQAWATVLAKQKRSLVCEVKARAPAESVGAHLRFLSRTGTWEHLLLDLNQILETAVSQREQALGLLSQQVAPETRGASGQGRTTHSAKTLTASPNRFPRARVGSSHNNNERTSSRHTSSRQEGFPDTWADGSFAVARGAFSAEKSGRKAGGSPGRPAFRENIAGSRHNSRRARLTAESRRRAGLTEIVDERILRCLHPWIVTLLARSAVQFVPSVPHKHRIGFRMDDTNKVEALAETQLTRRYWRLLEGVSDAVLLVGAAKIEAATLAAEAGEWLLLLGFAHHLVSKGHVGLPCTLPALPRNSSIKGHTSSIQVLGMISEQANHFLAPVRRKRAENAPGLEEDTPDAQYQQQGPAATEQHGQHHQPSARLYATGPMHQGGQGQATSVPKWFSAHKTLCETCWALRTGASSAGGSKCQRCGRTHVRGFSHEISNRGGDDTADPVPWQQFSQQVKESLDLFIVHAAYACVLHPGPLNNTTVAAGLGGGLGWWNGGDTEHQAWWRAVCGGKEAAKRLRDDGCDTVGNLYTYVRGSTVGCSSSSSSLAGCGDGAPPKKVRSRTKKLRRLINDEELATKIASLLRRLMSAFEELRKQHRWPTVSKVAVNRAMRRLQLPHMTGTTTTPGSAEVSSKCIRRSSEGL 2091
            DAPYA+ASWSLAVAY+VGSWRGGLRQRYYFGRLVRFLAHRRSR+AALRE VTARMAKRLQAWATVLAK+KRSLVCE+KARAPAE VGAHLRFLSRTGTWE LLLDLNQILETAVSQREQA+GLLS+QVA ETRGASGQGRTTHSA+T TASP+RFPRARVGSSHN ++RTSSRHTSSRQ G PDTWADGSF VARGA SAE+SGRKAGGSPG PA RENIAGSRH+SRRARLTAESRRR GLTEIVD RILRCLHPWIVTLLARSAVQFVPSVPHKHR+GFRMDDT KVEALAETQLTRRYWRLLEGVSDAV LV AAKIEAATLAAEAGEWLLLLGFAHHLVSKGHVGLPCTLPALPRNSSI G  SSI+V                                                                                                                                          KESLDLFIVHAAYACVLHPGPL+N  VAAGLGGGLGWWNGGDTE QAWWRAVCGGKEAAKRLRDDGCDTVG LYTYVRGS VGCSSSSSSLAGCGDGA PKK RSRTKKLRRL+ND++LATKIASLLRRLMSAFEELRKQH WPTVSK A++R  RRLQLP M GT  TPGSAEVSSK  R S EGL
Sbjct:  568 DAPYASASWSLAVAYNVGSWRGGLRQRYYFGRLVRFLAHRRSRKAALRERVTARMAKRLQAWATVLAKEKRSLVCEIKARAPAEIVGAHLRFLSRTGTWERLLLDLNQILETAVSQREQAVGLLSEQVALETRGASGQGRTTHSARTSTASPHRFPRARVGSSHNTHQRTSSRHTSSRQGGSPDTWADGSFRVARGASSAEESGRKAGGSPGHPAIRENIAGSRHDSRRARLTAESRRRVGLTEIVDGRILRCLHPWIVTLLARSAVQFVPSVPHKHRVGFRMDDTRKVEALAETQLTRRYWRLLEGVSDAVSLVVAAKIEAATLAAEAGEWLLLLGFAHHLVSKGHVGLPCTLPALPRNSSINGPASSIKV------------------------------------------------------------------------------------------------------------------------------------------KESLDLFIVHAAYACVLHPGPLSNAMVAAGLGGGLGWWNGGDTE-QAWWRAVCGGKEAAKRLRDDGCDTVGKLYTYVRGSAVGCSSSSSSLAGCGDGAAPKKARSRTKKLRRLVNDDDLATKIASLLRRLMSAFEELRKQHLWPTVSKAAIDRTNRRLQLPRMAGTAPTPGSAEVSSKGTRTSREGL 1125          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2017.6612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNB2_9PHAE0.000e+077.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN60_ECTSI4.420e-31371.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2017contigEcto-sp13_S_contig2017:9388..14925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2100
Hectar predicted targeting categoryother localisation
Exons9
Cds size2100
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2017.6612.1prot_Ecto-sp13_S_contig2017.6612.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2017 9388..14925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.768261-CDS-Ecto-sp13_S_contig2017:9387..95601681463013.768261-CDS-Ecto-sp13_S_contig2017:9387..9560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2017 9388..9560 +
1681463013.7772665-CDS-Ecto-sp13_S_contig2017:10053..103101681463013.7772665-CDS-Ecto-sp13_S_contig2017:10053..10310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2017 10054..10310 +
1681463013.7856581-CDS-Ecto-sp13_S_contig2017:10754..111571681463013.7856581-CDS-Ecto-sp13_S_contig2017:10754..11157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2017 10755..11157 +
1681463013.7938766-CDS-Ecto-sp13_S_contig2017:11517..116621681463013.7938766-CDS-Ecto-sp13_S_contig2017:11517..11662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2017 11518..11662 +
1681463013.8019838-CDS-Ecto-sp13_S_contig2017:12003..125491681463013.8019838-CDS-Ecto-sp13_S_contig2017:12003..12549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2017 12004..12549 +
1681463013.810029-CDS-Ecto-sp13_S_contig2017:12877..130181681463013.810029-CDS-Ecto-sp13_S_contig2017:12877..13018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2017 12878..13018 +
1681463013.818182-CDS-Ecto-sp13_S_contig2017:13515..137941681463013.818182-CDS-Ecto-sp13_S_contig2017:13515..13794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2017 13516..13794 +
1681463013.8262842-CDS-Ecto-sp13_S_contig2017:14261..143581681463013.8262842-CDS-Ecto-sp13_S_contig2017:14261..14358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2017 14262..14358 +
1681463013.8343406-CDS-Ecto-sp13_S_contig2017:14866..149251681463013.8343406-CDS-Ecto-sp13_S_contig2017:14866..14925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2017 14867..14925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2017.6612.1

>prot_Ecto-sp13_S_contig2017.6612.1 ID=prot_Ecto-sp13_S_contig2017.6612.1|Name=mRNA_Ecto-sp13_S_contig2017.6612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=700bp
DAPYANASWSLAVAYDVGSWRGGLRQRYYFGRLVRFLAHRRSRRAALREL
VTARMAKRLQAWATVLAKQKRSLVCEVKARAPAESVGAHLRFLSRTGTWE
HLLLDLNQILETAVSQREQALGLLSQQVAPETRGASGQGRTTHSAKTLTA
SPNRFPRARVGSSHNNNERTSSRHTSSRQEGFPDTWADGSFAVARGAFSA
EKSGRKAGGSPGRPAFRENIAGSRHNSRRARLTAESRRRAGLTEIVDERI
LRCLHPWIVTLLARSAVQFVPSVPHKHRIGFRMDDTNKVEALAETQLTRR
YWRLLEGVSDAVLLVGAAKIEAATLAAEAGEWLLLLGFAHHLVSKGHVGL
PCTLPALPRNSSIKGHTSSIQVLGMISEQANHFLAPVRRKRAENAPGLEE
DTPDAQYQQQGPAATEQHGQHHQPSARLYATGPMHQGGQGQATSVPKWFS
AHKTLCETCWALRTGASSAGGSKCQRCGRTHVRGFSHEISNRGGDDTADP
VPWQQFSQQVKESLDLFIVHAAYACVLHPGPLNNTTVAAGLGGGLGWWNG
GDTEHQAWWRAVCGGKEAAKRLRDDGCDTVGNLYTYVRGSTVGCSSSSSS
LAGCGDGAPPKKVRSRTKKLRRLINDEELATKIASLLRRLMSAFEELRKQ
HRWPTVSKVAVNRAMRRLQLPHMTGTTTTPGSAEVSSKCIRRSSEGLTS*
back to top

mRNA from alignment at Ecto-sp13_S_contig2017:9388..14925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2017.6612.1 ID=mRNA_Ecto-sp13_S_contig2017.6612.1|Name=mRNA_Ecto-sp13_S_contig2017.6612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5538bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2017:9388..14925+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCTCCCTACGCAAACGCAAGTTGGAGCCTGGCCGTGGCGTACGACGT GGGCTCGTGGCGAGGGGGTCTCAGGCAGAGGTACTACTTCGGTCGCTTGG TTCGTTTTCTCGCCCACCGCCGGAGCCGAAGAGCTGCTCTCCGGGAACTC GTGACGGCCCGGATGGCCAAGAGGTCAGCGAGGGGCAACACACACGCACA CACAACCGGGGTAGCCCAGTACTCTCCCTCAGCAGCTATTATTCTAGACC GAATCGAGACTGAACACCCAACTGACAGTGACATCGCAGTCCCATGGCCT TGCCGGTAGGTGAATTCACCGCAGAACGGGACAAAGGTGGAATTATACAC ATGGCGAAACTTCCCCGAGCATGGCCAGCTGCATGTAGTTTGGAAAGTTG TCGTGAGCCTCTATCGACGACTTATTCTCTCCGCGGCGATTTATTCTCTA TTGCCGGGACACCCGCGTGTGTTCCCAAGAGCGAGGGTGAAACTACGAAT GGCCAAGACCGTAAGAGGTTGCATCGAATCCATTCCGCGGTCAAACAAGC GCGAACAAACCGGAAGAAACGCATGCTGCTCCCGGTATCGGCGGCCTCTC TCTCTCTTTCTTCAAATTTCACCTCTGCTGACCAAGATTCGTCTGACGTG CCACCCCCGCATGCAGGCTCCAAGCATGGGCTACTGTTCTCGCCAAGCAG AAGCGCTCTCTGGTTTGCGAAGTAAAAGCCCGCGCTCCTGCGGAGAGCGT CGGTGCTCACCTACGCTTCCTCTCGAGAACCGGAACGTGGGAGCACCTGC TGCTTGACCTCAACCAAATACTTGAAACCGCCGTATCTCAGCGGGAACAA GCGCTTGGTCTGCTTTCGCAGCAAGTCGCTCCGGAAACGCGTGGTGCATC TGGGCAAGGCCGAACAACTCACTGTGAGTCGGCGCGAGTAGACTCCAAGC GTGAATGGGGTCGACGTTGAAGTGCGTCGCTTCGTCGTTGCATAGCTGGT AGCGCTTGCGTGAGAGCCGCCGTTATGAAACCATGACCGTTGCTACTATC TTAAAATTTCCGGCGTGCCTCCAACTCCCGGCGCACAACGTCCGTAACCC CAAGGATACTTGTACCGCGCCTTAGTGCAACACAAAAACGAAAAAAGACT CAATTCTACGCCTTCGATATAAACGTTTTCTTTGCGGATACCTCGCTTTT GGCGAAATCACGCGATGAACTTCTGAGGGGTTTTTCAGGATTGCGCTGGG TCCTAGGACTTGAAATTTCATTCTATGCCAATAACCCCCTCGCCTTTCCC ATGGGAGTGGGCTCTGTCCTTCCCCACTCGCTCCTCGCCGTAATGCCTCT TATGTCGGGAGCATCAGCGGCGAAGACGCTGACGGCCTCACCCAACCGCT TCCCGAGGGCCCGAGTTGGTTCCTCCCACAACAACAACGAGAGGACGTCT TCCAGACACACCAGCAGCCGACAGGAAGGGTTTCCTGACACGTGGGCTGA CGGCAGCTTCGCGGTAGCTCGGGGAGCATTCTCGGCGGAGAAATCGGGAA GAAAAGCGGGGGGGTCCCCCGGCCGCCCCGCCTTCAGGGAAAATATAGCG GGAAGTCGGCACAACAGTCGTAGGGCCAGATTGACAGCCGAGTCCAGGCG TAGGGCGGGTCTGACGGAAATTGTGGATGAGCGGATCCTACGGTGCTTGC ATCCCTGGATCGTCACCCTGCTGGCGAGGTCTGCGGTCCAGTTTGTGCCG TCCGTGCCGCACAAGCACAGGTAGGGTTTAGGTGCTTCAGTGTTGGTCTC CGTGAAAAGCAGCGATGGTAGCACGTAGATTTCGTGGGAGCTTCTAGCTT TCTGCCCGGTGTATTTCGTGCTGCGACGAGTGGATTTGATTCCAGCTGTC CCCCGCTCCCTTCACGCCGCCATGTGACGCGGAAGTGTAGTGCTCCGCTT CGTACCTTTCATGCTTGACGAAACGGTAGCGCGTTTCGATTGCAACACAC GAAATTCCTTTGCATCGTGTCCGCTTCATCCCGCGGCCTATTCTCCCGCG TCGACCCCCTTGTCCCGATCGATGTTGCCGTGGTTTATTGTCGCACGCTA CTTGAACATCGTGTCAAACGTTGGTGCAAGGATTGGCTTTCGCATGGATG ATACAAACAAGGTGGAGGCGCTTGCGGAGACGCAGCTGACGCGGCGTTAC TGGAGGTTGCTGGAAGGCGTGTCAGACGCCGTCTTGCTTGTAGGTGCGGC CAAGATCGAGGCGGCCACACTAGCGGTGCGTTGTTGTTGTTGATGCTGTA GTTGTTGTTTTTCATCTATTTACGGCGTTGACATCGATGGTCCACACCTC AAAAAGTAGCAGGTATTAATTTTGCCCCGATTCGCGGCTGAGCCCGAAGA CATGTAGTAGAAAATGGTAGGCATTGTGGAGTCGTGGATGACAGGCAGCG TGCCCTTGTTATCCCGCCTCACAGTAGACACAGCGACTAGATAACCACTC CAGCTTATGACAGGCCACGCTGTGGGTAATGGTGTCCGGGCTGAAGAGCA GCCGGGCCACAACTATCGAGTTAGAGCAAACAGACCCGGTTTATTGAACG CCTATTGAAACGGCAGGCGGAGGCGGGGGAGTGGCTTCTTCTTCTGGGAT TTGCTCACCACCTCGTGTCCAAGGGGCACGTTGGCCTGCCATGTACTCTT CCCGCGCTGCCTCGGAACAGCAGCATCAAAGGGCACACCAGCAGCATCCA GGTGCTGGGGATGATATCAGAACAGGCCAATCACTTCCTCGCCCCGGTCC GACGAAAACGCGCAGAAAATGCGCCTGGGTTGGAAGAGGATACCCCTGAC GCCCAGTATCAGCAGCAAGGTCCGGCGGCAACAGAACAACACGGTCAACA CCACCAACCCAGCGCCCGCCTCTACGCTACAGGACCTATGCATCAGGGGG GGCAAGGTCAAGCAACGTCGGTGCCCAAATGGTTTTCGGCGCACAAGACT CTGTGCGAGACTTGCTGGGCCTTGCGAACCGGTGCCAGCTCTGCCGGGGG CTCGAAGTGCCAGAGGTGTGGCAGGACACACGTACGGGGGTTTTCCCACG AGATTTCGAACCGAGGCGGTGACGACACCGCGGATCCTGTCCCCTGGCAG CAGTTCAGCCAGGTTCGCTGCCGTCGAAAACATCATTTCGTATTCGTGCA AACCAGTCTCTCAGCTGCGGCTCGCCATGCGGTGTATATTCCTTGCACGT TCTTCGACTACCACCCCGAGTGATGACAACCTATTCGCGCTGCGCCATGT TTCCTCGTCCGCCCGCTAGTAAGAGGAGGGTTAGTCTCGAGCCAGTAGCT TCGTTTCCACCGGCGGCACATGCTCACACGCAACGGTTGCTTGCAGAAAA ACACCCCTGCAGGACGAGACCCTCCATCACTCTTCCACGCTGACCTCCTT TCCACCCTGCTGTTGAGAATTGCACTTCGCCACAACGAAGCAGGTGAAAG AGTCCCTTGACTTGTTCATCGTTCACGCGGCCTACGCGTGCGTGCTGCAC CCAGGCCCCCTCAACAACACAACGGTCGCTGCCGGCCTCGGCGGGGGCCT CGGTTGGTGGAACGGTGGAGATACCGAGCACGTGGGTCAAGGGCAACAGC AATGATGGGGAACTAACGCTTTGTTAGAAAAATCGTCCTCCCAACACAGT ACTCTCCAACATCTACGATATATTTGATTTGCAGGAACGGGTCAAAGACA CGTGAGAGATTTGTTATGAGAAATTGCAGGCCCGCGGTTCCGGTGAATGC ATCTCGTATAGCATGCACCGCCATTCCCTTCCCACCAGTGTCGACACATG GGGCACTGCCCCGATGACATTGTCCGCGCGGGCATCACGTATTGTATGTT CCGGCTTGATTGACAACGTCTAACCCCTCGCACCGAGTGATGGTCGCCTA CAATATTCCACACTAAAAGATGCACGAAACCTCCAGTAGTTCATTGCCTA TATTTGATAATCTGAATTGAGTGAAACCTCGGTTGAAAGGCCCGAGGCCG GCGATTCCTCTGGTGTAGATGCCCTCCCGCCCCAACACGTTGTCTAACCC ATTTCTTCCCCTTTTGAACGTTCTCGAGCAGGCTTGGTGGAGAGCAGTGT GCGGCGGGAAAGAAGCGGCCAAGCGTTTGCGCGACGACGGCTGCGACACG GTAGGAAATCTCTACACGTACGTCCGAGGGTCAACAGTCGGGTGCTCTTC CTCGTCCTCCTCCTTGGCGGGGTGCGGTGACGGTGCTCCCCCGAAAAAAG TCAGATCCCGCACGAAGAAGCTGCGGAGGCTAATAAACGACGAGGAGCTA GCCACGAAGATAGCATCGCTGCTGCGGCGCCTGATGTCTGCCTTCGAAGA GCTGCGGGTGAGGGCCGGGCTCTATTTGGTCGTGAGGTTCATCCGCAAGG CGGTGGGAAAACCGTAGGAAGAACAAGGTTGCAGCAAAACACCTGTGGCG GTTCAACCGGGGAACAGGCCCATGCGGCATGATGCTAATAGGGCAAGGAG GTGCTAGGGCATCGAGAAACGCAACACACTCGCTCGGGCAAACTATCCCG TTTGTGTACACGTCGACCACATCTGCTTCTCTCTCTTGCGTGGTGATGGA CGTGACTAGACTCGCCAGTGGTAGCCCGACAATCAGAACGATAAAGTCTC AGGTCCGTTTCAAGTTCGCTCCCGGCAGTGATCACCTGAGACAGCAACAT TTACTCTTTGCCTATGTACTAGGTTTCGTAACAAAATACGTATATCAGTT CCTCAGGATCATGGCTCGCGGCACTCGAGCCGCTTAGCACTCTCGATAAC CTCTCGTGTGAATCTCGTTTGCAGAAACAACATCGTTGGCCGACGGTCTC CAAAGTAGCTGTCAACCGCGCCATGCGAAGATTACAGCTTCCTCACATGA CAGGCACGACAACGACCCCAGGTGAGAAGCCCCGCAGGGTGCCAAGGGTA TAGCCCATCGGTAACGTCCGGTGTGTCTGTTGTACAATAGCTACCTCTTT GCATGCGTCACATGGCCGAGGGAGCGTCGCGAAACTGTCCTGTGCGGTAC CCTTTCCCTTTCCTCTACTTTGTGCTCTCACAGGCCACTATACTCAAGAC CCTGTAGTTTCTGTTTTTTCGTGCAGCAGAGAAACTCTCACGCAAGTTGT GCCCAAAATGTCGCGGCGATACCCAAGCCCACCGCACCTCACGAGCAAAC AGATCTGTTCGATCGTCGAGCAACGTCGGGAACTCGTATCGTTTGTCTTT CCGGTCACGCCTTAAATGAGTTTCTGATTTCGACTTGCAGTTGGTGGCAA AGCTGCATCCGTCTCACGGTATCCGTCTCTATCGCCTTCCTCGTCGGCAC TTTCTCCCGCCCGTTCCTCGCTGACCCCTTCCTCTCCGCTTTCAACCAAT TTCTTGTTGCACATGATGGGTTTCGACAGGTTCAGCCGAAGTATCCTCTA AATGTATTCGGAGGTCAAGCGAAGGCTTGACAAGTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2017:9388..14925+

>mRNA_Ecto-sp13_S_contig2017.6612.1 ID=mRNA_Ecto-sp13_S_contig2017.6612.1|Name=mRNA_Ecto-sp13_S_contig2017.6612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2100bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2017:9388..14925+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCTCCCTACGCAAACGCAAGTTGGAGCCTGGCCGTGGCGTACGACGT
GGGCTCGTGGCGAGGGGGTCTCAGGCAGAGGTACTACTTCGGTCGCTTGG
TTCGTTTTCTCGCCCACCGCCGGAGCCGAAGAGCTGCTCTCCGGGAACTC
GTGACGGCCCGGATGGCCAAGAGGCTCCAAGCATGGGCTACTGTTCTCGC
CAAGCAGAAGCGCTCTCTGGTTTGCGAAGTAAAAGCCCGCGCTCCTGCGG
AGAGCGTCGGTGCTCACCTACGCTTCCTCTCGAGAACCGGAACGTGGGAG
CACCTGCTGCTTGACCTCAACCAAATACTTGAAACCGCCGTATCTCAGCG
GGAACAAGCGCTTGGTCTGCTTTCGCAGCAAGTCGCTCCGGAAACGCGTG
GTGCATCTGGGCAAGGCCGAACAACTCACTCGGCGAAGACGCTGACGGCC
TCACCCAACCGCTTCCCGAGGGCCCGAGTTGGTTCCTCCCACAACAACAA
CGAGAGGACGTCTTCCAGACACACCAGCAGCCGACAGGAAGGGTTTCCTG
ACACGTGGGCTGACGGCAGCTTCGCGGTAGCTCGGGGAGCATTCTCGGCG
GAGAAATCGGGAAGAAAAGCGGGGGGGTCCCCCGGCCGCCCCGCCTTCAG
GGAAAATATAGCGGGAAGTCGGCACAACAGTCGTAGGGCCAGATTGACAG
CCGAGTCCAGGCGTAGGGCGGGTCTGACGGAAATTGTGGATGAGCGGATC
CTACGGTGCTTGCATCCCTGGATCGTCACCCTGCTGGCGAGGTCTGCGGT
CCAGTTTGTGCCGTCCGTGCCGCACAAGCACAGGATTGGCTTTCGCATGG
ATGATACAAACAAGGTGGAGGCGCTTGCGGAGACGCAGCTGACGCGGCGT
TACTGGAGGTTGCTGGAAGGCGTGTCAGACGCCGTCTTGCTTGTAGGTGC
GGCCAAGATCGAGGCGGCCACACTAGCGGCGGAGGCGGGGGAGTGGCTTC
TTCTTCTGGGATTTGCTCACCACCTCGTGTCCAAGGGGCACGTTGGCCTG
CCATGTACTCTTCCCGCGCTGCCTCGGAACAGCAGCATCAAAGGGCACAC
CAGCAGCATCCAGGTGCTGGGGATGATATCAGAACAGGCCAATCACTTCC
TCGCCCCGGTCCGACGAAAACGCGCAGAAAATGCGCCTGGGTTGGAAGAG
GATACCCCTGACGCCCAGTATCAGCAGCAAGGTCCGGCGGCAACAGAACA
ACACGGTCAACACCACCAACCCAGCGCCCGCCTCTACGCTACAGGACCTA
TGCATCAGGGGGGGCAAGGTCAAGCAACGTCGGTGCCCAAATGGTTTTCG
GCGCACAAGACTCTGTGCGAGACTTGCTGGGCCTTGCGAACCGGTGCCAG
CTCTGCCGGGGGCTCGAAGTGCCAGAGGTGTGGCAGGACACACGTACGGG
GGTTTTCCCACGAGATTTCGAACCGAGGCGGTGACGACACCGCGGATCCT
GTCCCCTGGCAGCAGTTCAGCCAGCAGGTGAAAGAGTCCCTTGACTTGTT
CATCGTTCACGCGGCCTACGCGTGCGTGCTGCACCCAGGCCCCCTCAACA
ACACAACGGTCGCTGCCGGCCTCGGCGGGGGCCTCGGTTGGTGGAACGGT
GGAGATACCGAGCACCAGGCTTGGTGGAGAGCAGTGTGCGGCGGGAAAGA
AGCGGCCAAGCGTTTGCGCGACGACGGCTGCGACACGGTAGGAAATCTCT
ACACGTACGTCCGAGGGTCAACAGTCGGGTGCTCTTCCTCGTCCTCCTCC
TTGGCGGGGTGCGGTGACGGTGCTCCCCCGAAAAAAGTCAGATCCCGCAC
GAAGAAGCTGCGGAGGCTAATAAACGACGAGGAGCTAGCCACGAAGATAG
CATCGCTGCTGCGGCGCCTGATGTCTGCCTTCGAAGAGCTGCGGAAACAA
CATCGTTGGCCGACGGTCTCCAAAGTAGCTGTCAACCGCGCCATGCGAAG
ATTACAGCTTCCTCACATGACAGGCACGACAACGACCCCAGGTTCAGCCG
AAGTATCCTCTAAATGTATTCGGAGGTCAAGCGAAGGCTTGACAAGTTGA
back to top