mRNA_Ecto-sp13_S_contig20169.6610.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20169.6610.1
Unique NamemRNA_Ecto-sp13_S_contig20169.6610.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A6H5JLV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLV4_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 7.660e-55
Identity = 106/157 (67.52%), Postives = 108/157 (68.79%), Query Frame = 1
Query:    1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVGGGSYADEG-------------------GGG-----------------VWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
            YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIV  +      D G                   G G                 V KRAGFSTFHIRRGDFQYARMKPPAETIA AT DLIQPGEVLFIATDERKKEFFDVFT+EH
Sbjct:  319 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVGRLRAAGGGDPGNWSGYYGXXXXXXXXXXXXGXGEVAXXXXXXXXXXXXXEVRKRAGFSTFHIRRGDFQYARMKPPAETIAAATKDLIQPGEVLFIATDERKKEFFDVFTYEH 475          
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S4K6W6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6W6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.460e-26
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGV-----GGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
            YR+  HFY F+ F+DPV   +++R VRD +H+R+S++CAA  IV  V       G   D  GGG     G+S+ H+RRGD QY ++K  A+   + T +L +PGE+L+IATDER K FFD     H
Sbjct:   41 YRMVNHFYGFLLFTDPVVDNYYKRFVRDFLHYRDSIYCAAGKIVKAVQEEGQSTGIVIDNEGGG-----GYSSLHVRRGDLQYKKVKISAQQWYDNTKELWEPGEILYIATDERNKTFFDPIKEHH 161          
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S4NGC0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGC0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.390e-25
Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGV-----GGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
            YR+  HFY F+ F+DPV   +++R VRD +H+R+S++CAA  IV  V       G   D  GGG     G+S+ H+RRGD QY ++K  A+   + T +L +PGE+L+IATDER K FFD     H
Sbjct:  306 YRMVNHFYGFLLFTDPVVDNYYKRFVRDFLHYRDSIYCAAGKIVKAVQEEGQSTGIVIDNEGGG-----GYSSLHVRRGDLQYKKVKISAQQWYDNTKELWEPGEILYIATDERNKTFFDPIKEHH 426          
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S2ULA5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULA5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.450e-25
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVA-----GVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
            YRL  HFY+ + F+DPV   H++RLVRD +H+R+S+FCAA  IV      G   G   DE GGG     G+S+ HIRRGDFQY  ++  A+   + T D+  P E+L+IATDER K +F+     H
Sbjct:  436 YRLLNHFYSTIHFTDPVIDNHYKRLVRDFLHYRDSIFCAAGKIVLALQQEGAKRGFDVDEEGGG-----GYSSLHIRRGDFQYNMVRLSAKRWYQNTKDIWLPKEILYIATDERDKSWFEPLAKHH 556          
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S3L800_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L800_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.860e-24
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVG------GGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFD 345
            +RL +HFY +V FSDPV + +++R VRD +H+ +S+FCAA  IV  V       G    DEG G      GFS  H+RRGD QY R+K PA    + T ++ Q  E+L++ATDER K FFD
Sbjct:  351 FRLLSHFYNYVFFSDPVESHYYKRFVRDYLHYHDSIFCAAGKIVQAVQVEGQNRGFQIDDEGAG------GFSALHVRRGDLQYKRVKIPASEWYQNTKEIWQDKEILYVATDERNKTFFD 465          
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S1Z4N9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4N9_TRICV)

HSP 1 Score: 104 bits (260), Expect = 9.720e-24
Identity = 57/126 (45.24%), Postives = 76/126 (60.32%), Query Frame = 1
Query:    1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVA-----GVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
            YR+ +HFY F+ F++P     ++R VRD +H++ S+FCAA  IV      G   G   DE GG     AGFS+ H+RRGD QY ++K  AE   E T +L +P E+L+IATDER K FFD     H
Sbjct:  384 YRIVSHFYGFILFTNPAIDNFYKRFVRDFLHYKSSIFCAAGKIVKALQEDGKKLGFEVDEEGG-----AGFSSLHVRRGDLQYKKVKISAEEWYENTKELWEPKEILYIATDERNKTFFDPIKEHH 504          
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S2S6I2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6I2_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.250e-23
Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    4 RLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFF 342
            RL THFY FV   DPVA R   RLVR+ +H+R+ +FCA    V  +       EGGG       FST H+RRGDFQY  +K PAE I     D++Q GE++++ATDE+ ++FF
Sbjct:   13 RLLTHFYLFVKALDPVAQRESLRLVRNYLHYRQPVFCACLRAVQAL-----ETEGGG------SFSTMHVRRGDFQYKNVKLPAEDILRDIRDVLQEGELVYVATDEQGRDFF 114          
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A1E7F213_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F213_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.720e-23
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVA-----GVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
            +RL  HFY  + F+DP    + +R VRD +H+ + ++CAA  IV      G+  G   DE GGG+     FS  HIRRGDFQY ++K  AE   E T ++ +P E+++IATDER K FFD     H
Sbjct:  258 WRLLAHFYNAIHFTDPSVDNYFKRFVRDFLHYNDQIYCAAGKIVKALQIEGIERGFNPDEEGGGI-----FSAMHIRRGDFQYKKVKISAEKWYENTKEVWKPNEIIYIATDERDKSFFDPIAKHH 378          
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A835YSB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.150e-23
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    4 RLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFD 345
            RL THFYTF   S P   R+H+RL+RDL+H+R+ +FC A+ +V+ V G     E  G V     FS+FHIRRGDF   + +  AE +  +  + ++PGE++FIATDER K FF+
Sbjct:  356 RLLTHFYTFARHSAPAVDRYHKRLMRDLMHYRDEMFCKASQVVSLVRG-----EAPGSV-----FSSFHIRRGDFNLEKQRMTAEDMLASVEEYLRPGELVFIATDERDKSFFE 459          
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S2S7K4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S7K4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 5.710e-23
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGV-----GGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
            YRL +HFY F+ F++PV   H++R VRD +H+ + +FCAA  IV  +       G   D  G G     G+S+ H+RRGD QY R+K PAE   E   D+    E+++IATDER K FFD     H
Sbjct:  107 YRLLSHFYGFMLFTNPVINNHYKRFVRDFLHYHDVIFCAAGKIVNSLQKMAEARGVLTDPSGSG-----GYSSMHVRRGDLQYKRVKIPAEEWNENLEDIWLDDEIIYIATDERNKTFFDPLATHH 227          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLV4_9PHAE7.660e-5567.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4K6W6_9STRA1.460e-2644.44Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4NGC0_9STRA3.390e-2544.44Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2ULA5_9STRA8.450e-2546.03Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3L800_9STRA1.860e-2446.28Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S1Z4N9_TRICV9.720e-2445.24Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2S6I2_9STRA1.250e-2346.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1E7F213_9STRA1.720e-2342.86Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A835YSB5_9STRA3.150e-2346.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S7K4_9STRA5.710e-2342.86Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20169contigEcto-sp13_S_contig20169:517..1440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score198.0
Seed ortholog evalue2.6e-48
Seed eggNOG ortholog2880.D8LT53
Model size363
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.GDP-fucose protein O-fucosyltransferase
EggNOG OGs2B2NM@1,2S0D4@2759
Ec32 ortholog descriptionGDP-fucose protein O-fucosyltransferase
Ec32 orthologEc-08_004280.1
Cds size363
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.576661-CDS-Ecto-sp13_S_contig20169:516..6391681463013.576661-CDS-Ecto-sp13_S_contig20169:516..639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20169 517..639 -
1681463013.598006-CDS-Ecto-sp13_S_contig20169:1092..12031681463013.598006-CDS-Ecto-sp13_S_contig20169:1092..1203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20169 1093..1203 -
1681463013.6171105-CDS-Ecto-sp13_S_contig20169:1311..14401681463013.6171105-CDS-Ecto-sp13_S_contig20169:1311..1440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20169 1312..1440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20169.6610.1prot_Ecto-sp13_S_contig20169.6610.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20169 517..1440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20169.6610.1

>prot_Ecto-sp13_S_contig20169.6610.1 ID=prot_Ecto-sp13_S_contig20169.6610.1|Name=mRNA_Ecto-sp13_S_contig20169.6610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVGGG
SYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGE
VLFIATDERKKEFFDVFTHEH
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mRNA from alignment at Ecto-sp13_S_contig20169:517..1440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20169.6610.1 ID=mRNA_Ecto-sp13_S_contig20169.6610.1|Name=mRNA_Ecto-sp13_S_contig20169.6610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20169:517..1440- (Ectocarpus species13 EcNAP12_S_4_19m)
TACAGGCTCTTCACCCACTTCTATACCTTCGTGGGCTTCAGCGACCCCGT CGCAGCCCGGCACCACCGCCGCCTCGTTCGAGACCTAGTCCACTTCCGAG AGTCCCTCTTCTGCGCGGCGGCGACTATAGTCGGGAGGCTCCGCGCCGCC GGCGGGGGGGACCCGGGGAACTGGTCCGGGTACTACGGGGAGTGGGGGGG GCTTGGGGAGAAGGAAGGGGGGGTGGGGGTTGGGGAGGTGGCCGGAGTCG GGGGGGGGAGCTACGCGGACGAGGGCGGGGGAGGGGTTTGGAAGCGGGCG GGCTTCAGCACGTTCCACATCCGACGAGGGGACTTCCAGTACGCTAGGGT GTGTTCGGTGGAAAGTGTTTGTGTGTGTGTTGTTCTACGAAGGAGGCGAA AGTCGCTTCTTGGCGGTGCGTCCGTCTTTTTTTTGGGAGGGGGCGGGCGG TAGAACGATGCTCTGGTAGATTAAACGCGTCTTACGGTTAACAATTTCCG GGAACAGGTGCCGACAAGCGCAAGTTCCTGAAATAGCTCCGCGAAAAAAT AAGTTAGTGTGCTTCACGTTCTCTCTGGCATCCACTCGTCGGGGAGTCCT TTGTTGGATGTTCTCCCGACCTATTGCACCGTCCGTGGATGGGTAGTTGG ATATTTACGTATGTGCTTGATAGGTGTTTCGTGCTGTGCTGCGCTGTGCT GTACTGTGCTCTGCCCTGCTCTATGTTCGTCCCACTCCCATACGCGTGGT TGCTTAAAAGTAGAGCGTTGTTGCATGGTTTTATTGTTTTGGTGTTTCCA GATGAAACCGCCGGCAGAGACGATCGCTGAGGCGACAAACGACCTCATAC AGCCGGGGGAGGTGCTGTTCATCGCCACGGACGAGCGAAAGAAGGAGTTC TTCGACGTCTTTACGCACGAACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20169:517..1440-

>mRNA_Ecto-sp13_S_contig20169.6610.1 ID=mRNA_Ecto-sp13_S_contig20169.6610.1|Name=mRNA_Ecto-sp13_S_contig20169.6610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20169:517..1440- (Ectocarpus species13 EcNAP12_S_4_19m)
TACAGGCTCTTCACCCACTTCTATACCTTCGTGGGCTTCAGCGACCCCGT
CGCAGCCCGGCACCACCGCCGCCTCGTTCGAGACCTAGTCCACTTCCGAG
AGTCCCTCTTCTGCGCGGCGGCGACTATAGTGGCCGGAGTCGGGGGGGGG
AGCTACGCGGACGAGGGCGGGGGAGGGGTTTGGAAGCGGGCGGGCTTCAG
CACGTTCCACATCCGACGAGGGGACTTCCAGTACGCTAGGATGAAACCGC
CGGCAGAGACGATCGCTGAGGCGACAAACGACCTCATACAGCCGGGGGAG
GTGCTGTTCATCGCCACGGACGAGCGAAAGAAGGAGTTCTTCGACGTCTT
TACGCACGAACAC
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