mRNA_Ecto-sp13_S_contig20169.6610.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A6H5JLV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLV4_9PHAE) HSP 1 Score: 189 bits (479), Expect = 7.660e-55 Identity = 106/157 (67.52%), Postives = 108/157 (68.79%), Query Frame = 1
Query: 1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVGGGSYADEG-------------------GGG-----------------VWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIV + D G G G V KRAGFSTFHIRRGDFQYARMKPPAETIA AT DLIQPGEVLFIATDERKKEFFDVFT+EH
Sbjct: 319 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVGRLRAAGGGDPGNWSGYYGXXXXXXXXXXXXGXGEVAXXXXXXXXXXXXXEVRKRAGFSTFHIRRGDFQYARMKPPAETIAAATKDLIQPGEVLFIATDERKKEFFDVFTYEH 475
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S4K6W6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6W6_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.460e-26 Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGV-----GGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
YR+ HFY F+ F+DPV +++R VRD +H+R+S++CAA IV V G D GGG G+S+ H+RRGD QY ++K A+ + T +L +PGE+L+IATDER K FFD H
Sbjct: 41 YRMVNHFYGFLLFTDPVVDNYYKRFVRDFLHYRDSIYCAAGKIVKAVQEEGQSTGIVIDNEGGG-----GYSSLHVRRGDLQYKKVKISAQQWYDNTKELWEPGEILYIATDERNKTFFDPIKEHH 161
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S4NGC0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGC0_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.390e-25 Identity = 56/126 (44.44%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGV-----GGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
YR+ HFY F+ F+DPV +++R VRD +H+R+S++CAA IV V G D GGG G+S+ H+RRGD QY ++K A+ + T +L +PGE+L+IATDER K FFD H
Sbjct: 306 YRMVNHFYGFLLFTDPVVDNYYKRFVRDFLHYRDSIYCAAGKIVKAVQEEGQSTGIVIDNEGGG-----GYSSLHVRRGDLQYKKVKISAQQWYDNTKELWEPGEILYIATDERNKTFFDPIKEHH 426
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S2ULA5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULA5_9STRA) HSP 1 Score: 107 bits (268), Expect = 8.450e-25 Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVA-----GVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
YRL HFY+ + F+DPV H++RLVRD +H+R+S+FCAA IV G G DE GGG G+S+ HIRRGDFQY ++ A+ + T D+ P E+L+IATDER K +F+ H
Sbjct: 436 YRLLNHFYSTIHFTDPVIDNHYKRLVRDFLHYRDSIFCAAGKIVLALQQEGAKRGFDVDEEGGG-----GYSSLHIRRGDFQYNMVRLSAKRWYQNTKDIWLPKEILYIATDERDKSWFEPLAKHH 556
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S3L800_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L800_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.860e-24 Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVG------GGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFD 345
+RL +HFY +V FSDPV + +++R VRD +H+ +S+FCAA IV V G DEG G GFS H+RRGD QY R+K PA + T ++ Q E+L++ATDER K FFD
Sbjct: 351 FRLLSHFYNYVFFSDPVESHYYKRFVRDYLHYHDSIFCAAGKIVQAVQVEGQNRGFQIDDEGAG------GFSALHVRRGDLQYKRVKIPASEWYQNTKEIWQDKEILYVATDERNKTFFD 465
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S1Z4N9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4N9_TRICV) HSP 1 Score: 104 bits (260), Expect = 9.720e-24 Identity = 57/126 (45.24%), Postives = 76/126 (60.32%), Query Frame = 1
Query: 1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVA-----GVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
YR+ +HFY F+ F++P ++R VRD +H++ S+FCAA IV G G DE GG AGFS+ H+RRGD QY ++K AE E T +L +P E+L+IATDER K FFD H
Sbjct: 384 YRIVSHFYGFILFTNPAIDNFYKRFVRDFLHYKSSIFCAAGKIVKALQEDGKKLGFEVDEEGG-----AGFSSLHVRRGDLQYKKVKISAEEWYENTKELWEPKEILYIATDERNKTFFDPIKEHH 504
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S2S6I2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6I2_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.250e-23 Identity = 53/113 (46.90%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 4 RLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFF 342
RL THFY FV DPVA R RLVR+ +H+R+ +FCA V + EGGG FST H+RRGDFQY +K PAE I D++Q GE++++ATDE+ ++FF
Sbjct: 13 RLLTHFYLFVKALDPVAQRESLRLVRNYLHYRQPVFCACLRAVQAL-----ETEGGG------SFSTMHVRRGDFQYKNVKLPAEDILRDIRDVLQEGELVYVATDEQGRDFF 114
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A1E7F213_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F213_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.720e-23 Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 1
Query: 1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVA-----GVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
+RL HFY + F+DP + +R VRD +H+ + ++CAA IV G+ G DE GGG+ FS HIRRGDFQY ++K AE E T ++ +P E+++IATDER K FFD H
Sbjct: 258 WRLLAHFYNAIHFTDPSVDNYFKRFVRDFLHYNDQIYCAAGKIVKALQIEGIERGFNPDEEGGGI-----FSAMHIRRGDFQYKKVKISAEKWYENTKEVWKPNEIIYIATDERDKSFFDPIAKHH 378
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A835YSB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB5_9STRA) HSP 1 Score: 103 bits (256), Expect = 3.150e-23 Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = 1
Query: 4 RLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVGGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFD 345
RL THFYTF S P R+H+RL+RDL+H+R+ +FC A+ +V+ V G E G V FS+FHIRRGDF + + AE + + + ++PGE++FIATDER K FF+
Sbjct: 356 RLLTHFYTFARHSAPAVDRYHKRLMRDLMHYRDEMFCKASQVVSLVRG-----EAPGSV-----FSSFHIRRGDFNLEKQRMTAEDMLASVEEYLRPGELVFIATDERDKSFFE 459
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Match: A0A7S2S7K4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S7K4_9STRA) HSP 1 Score: 100 bits (249), Expect = 5.710e-23 Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 1 YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGV-----GGGSYADEGGGGVWKRAGFSTFHIRRGDFQYARMKPPAETIAEATNDLIQPGEVLFIATDERKKEFFDVFTHEH 363
YRL +HFY F+ F++PV H++R VRD +H+ + +FCAA IV + G D G G G+S+ H+RRGD QY R+K PAE E D+ E+++IATDER K FFD H
Sbjct: 107 YRLLSHFYGFMLFTNPVINNHYKRFVRDFLHYHDVIFCAAGKIVNSLQKMAEARGVLTDPSGSG-----GYSSMHVRRGDLQYKRVKIPAEEWNENLEDIWLDDEIIYIATDERNKTFFDPLATHH 227 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20169.6610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20169.6610.1 >prot_Ecto-sp13_S_contig20169.6610.1 ID=prot_Ecto-sp13_S_contig20169.6610.1|Name=mRNA_Ecto-sp13_S_contig20169.6610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp YRLFTHFYTFVGFSDPVAARHHRRLVRDLVHFRESLFCAAATIVAGVGGGback to top mRNA from alignment at Ecto-sp13_S_contig20169:517..1440- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20169.6610.1 ID=mRNA_Ecto-sp13_S_contig20169.6610.1|Name=mRNA_Ecto-sp13_S_contig20169.6610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20169:517..1440- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20169:517..1440- >mRNA_Ecto-sp13_S_contig20169.6610.1 ID=mRNA_Ecto-sp13_S_contig20169.6610.1|Name=mRNA_Ecto-sp13_S_contig20169.6610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20169:517..1440- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |