mRNA_Ecto-sp13_S_contig20165.6609.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20165.6609.1
Unique NamemRNA_Ecto-sp13_S_contig20165.6609.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 7.430e-62
Identity = 132/149 (88.59%), Postives = 135/149 (90.60%), Query Frame = 1
Query:    1 EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPSPV 447
            EFG GLGA+NCCVSDIVEHGE CSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSD  VCCP GCTMCGGSGCSTVGMPDYG ESCCSSD+LSTGA CSE  EAPCVL D    TP+PV
Sbjct: 1301 EFGGGLGADNCCVSDIVEHGEPCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGAVCCPTGCTMCGGSGCSTVGMPDYGPESCCSSDILSTGASCSETGEAPCVLADVVL-TPAPV 1448          
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.570e-32
Identity = 105/211 (49.76%), Postives = 115/211 (54.50%), Query Frame = 1
Query:    1 EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTE-----------------------------------------------------------PT-----CSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPS 441
            EFG GLG +NCC   I E+GELCS+AL APCY+D  AP P+PV     XXXXXXXXXXXXXXXXXXXXXX                                                             PT     CSTGI GIESSD  VCCP+GCT CGG GCSTVG+P+YGAESCC SDVLS G  CS  EEAPCVL + P P P+
Sbjct:  476 EFGGGLGEDNCCAVRIEEYGELCSVALAAPCYVD--APPPTPVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPAPSEMPVMAPTDEVVVCSTGIRGIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLDETPTPEPN 684          
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.420e-28
Identity = 93/150 (62.00%), Postives = 106/150 (70.67%), Query Frame = 1
Query:    1 EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPT--CSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPSP 444
            +FG+GLGAENCC SDIV++GELCSIALEAPCY+D+  P P P      XXXXXXXXXXXXXXXXXXXXXX EPT  CS GIPGI+S ++  CC   C  CGGS C   G    GAE+CC SD++  G  CS   EAPC L D P P P+P
Sbjct:  571 QFGDGLGAENCCESDIVDYGELCSIALEAPCYLDE--PTPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDLCSNGIPGIQSGNA--CCLAECGGCGGSDCDQFG-DGLGAENCCESDIVDYGELCSIALEAPCYL-DEPTPEPTP 714          
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.290e-26
Identity = 68/145 (46.90%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    1 EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPT--CSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPA 429
            E G GLG  NCC  +I E GELCSI LEAPC +D SAPAPSPVA P A                      TEPT  CS G PGI+S  S  CC   C  CGG GC   G    GA+ CC SD+   G  CS    APC + D  A
Sbjct:   63 ELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVAPV--------------------TEPTDVCSNGFPGIQSGVS--CCLAECGECGGRGCGEFG-GGLGADKCCESDIEEYGELCSIALAAPCYIDDGAA 184          
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.590e-25
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  223 CSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPSP 444
            CSTGIPGIESSD  VCCP+ CT CGG GCSTVG+P+YGAESCC  DV S G  CS  EEAPCVL D  +PT +P
Sbjct:  676 CSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGAESCCELDVQSAGVSCSVSEEAPCVLDDVLSPTETP 749          
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.860e-16
Identity = 49/145 (33.79%), Postives = 69/145 (47.59%), Query Frame = 1
Query:   13 GLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPSP 444
            GL   +CC   +    E C    EAPC I  S P PSP +  T                           CS G+ GI+ +  +VCCP+GC  CGG+GC+T G        SCC   + ++G +C E  +APC++  +PAP+P+P
Sbjct:  228 GLDGSSCCGGGVKASDEYCDETNEAPCIIG-SRPTPSPTSANT---------------------------CSNGLEGIDGN-GVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTP 343          
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.370e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  220 TCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAP 426
            TCS G+ GI+ +  +VCCP+ C  CGGSGC+  G     GAESCC S V ++G +C + +EAPC++  +P
Sbjct:  526 TCSNGVQGIDGN-GIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCIIGSSP 594          
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.200e-10
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  211 TEPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVL 414
            T  TCS G+ GI+ +  +VCCP+ C  CGG+GC+T G     G+ESCC   + ++GA+C +  EAPC++
Sbjct:  541 TVETCSNGLEGIDGN-GVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII 608          
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.830e-10
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  214 EPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAP 426
            E TC  GI GI+    +VCCP+ C  CGG+GCST G     GA+SCC   V S+G +C +  EAPC+   AP
Sbjct:  314 ESTCRDGIEGIDGR--VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCIYGSAP 383          
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.940e-10
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  214 EPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAP 426
            E TC  GI GI+    +VCCP+ C  CGG+GCST G     GA+SCC   V S+G +C +  EAPC+   AP
Sbjct:  336 ESTCRDGIEGIDGR--VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCIYGSAP 405          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FJ68_ECTSI7.430e-6288.59WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJ37_9PHAE1.570e-3249.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG29_9PHAE2.420e-2862.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ69_ECTSI1.290e-2646.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRE8_ECTSI1.590e-2570.27EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JC43_9PHAE3.860e-1633.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUJ9_ECTSI1.370e-1147.14Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
D7FQV4_ECTSI1.200e-1044.93Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
D7FN04_ECTSI3.830e-1048.61FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FN07_ECTSI3.940e-1048.61FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20165contigEcto-sp13_S_contig20165:2..1651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score216.1
Seed ortholog evalue1.1e-53
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
Model size449
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
Cds size447
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.4899528-CDS-Ecto-sp13_S_contig20165:1..301681463013.4899528-CDS-Ecto-sp13_S_contig20165:1..30Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20165 2..30 -
1681463013.5041804-CDS-Ecto-sp13_S_contig20165:541..7451681463013.5041804-CDS-Ecto-sp13_S_contig20165:541..745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20165 542..745 -
1681463013.524966-CDS-Ecto-sp13_S_contig20165:1145..12561681463013.524966-CDS-Ecto-sp13_S_contig20165:1145..1256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20165 1146..1256 -
1681463013.5394347-CDS-Ecto-sp13_S_contig20165:1548..16511681463013.5394347-CDS-Ecto-sp13_S_contig20165:1548..1651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20165 1549..1651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20165.6609.1prot_Ecto-sp13_S_contig20165.6609.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20165 2..1651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20165.6609.1

>prot_Ecto-sp13_S_contig20165.6609.1 ID=prot_Ecto-sp13_S_contig20165.6609.1|Name=mRNA_Ecto-sp13_S_contig20165.6609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAPV
AEPTAPVAEPTVPVAEPTAPTEPTCSTGIPGIESSDSMVCCPVGCTMCGG
SGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPSPV
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mRNA from alignment at Ecto-sp13_S_contig20165:2..1651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20165.6609.1 ID=mRNA_Ecto-sp13_S_contig20165.6609.1|Name=mRNA_Ecto-sp13_S_contig20165.6609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20165:2..1651- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTTCGGCGAAGGCCTAGGGGCGGAGAACTGCTGCGTGAGCGACATTGT GGAACACGGCGAGCTCTGCTCCATTGCTCTCGAGGCGCCGTGCTACATCG ACGGTGAGAAGTTGACGGCGGTATTGTCGGTTTCGACGTTGTAATTTTGG CATCCTGTGACACAGATATGTAGCTGGTTGCCGTCGCCGACTATTTTCGG TTAGTTGCTGTATTTGTCGTCGCACGATTCCTGCATGTGCCGTGTTCGCC GAGGATTGGGATAACTTCTGCAATCGTTGTAGTCGCCATTCCTCTTCGAC GCATATCTCCAATCACAGCCCTGCAAGCCAGCCAGCGTACGATACATCCC TAACATCCGTCCTCATTGTCTTGTCGTACGGTTTGGATGATTCAGACTCC GCCCCTGCGCCTTCGCCGGTCGCCATGCCCACCGCACCTGTCGCCGAGCC CACTGCACCTGTCGCTGAGCCCACGGTACCTGTCGCCGAACCTACTGCAC CCACCGGTAAGACGCCCTTCGCGTGTTTTCATGCTAGATAAATTACGTCA CAAACGAGATGGCGGGCATGTGATACGTAACCTCACGCAAGGCGTCCTGT GATGACGTCTTGCTTCACACTTACTGCATCCGAGTCTCCGCCCCGCTTAC CGATGTTTTTTCACTCGCCCCTCCGCCTTCCGAAACCGTGTTCGTCGTCT CTTTGACCCACTTGTTCAACAGTAGTTGCCGTTGTCCCGTTTCGGATGTT ACATACCCCCGCCACAGGTGCCATGTTGTAGCCGATTGTAGTGGTGGGCT TGCCGGCATGTGAAGTCCCCTACATAGTCCTCACGCTTCCTGAACGGGCT GCGACACAGCACGCATCACCCCTTCCCCTCCCCCTGCCCCACCTCACCCA CGACAGAGCCAACTTGCAGCACCGGCATCCCGGGAATCGAGTCCTCGGAC AGCATGGTCTGTTGCCCGGTTGGCTGCACCATGTGCGGCGGTTCTGGTTG CTCCACCGTGGGAATGCCAGACTACGGCGCCGAGTCCTGCTGCTCCTCCG ACGTCCTTTCCACTGGAGCGTGGTGCAGCGAGAAGGAGGAGGCGCCGTGT GTACTCGTTGGTGCGTGACGATACCAAGTAGCCCCACCGCCGAACACCAC TGCGGCATGGCTGCTTTTTTCGTGTGCATCATATTTTCCCTCGGAGGGAG GTATTTCATTTCACGAGGAACGAACGCGTAACCCCGAGATGACGAGAATG AGTTTCGTTTCTATCCTGCTTGTTGATTAAAGCTTGCTCTCGTCCTCACC GTCGGTCGTTGCGGTTCGTGTTTGTTTTCGGCTCGCTTGGTGCTGCGAGG TTGTGGTCGAAACATAAAAAATGGGTGTAAGCTCGGGGTCCCCCAAGGGA TGGGTGCTTCTGTCCTTGTCTGCCGCATGGCCTACTACGAACCCGTCCAT GCCCGACGGGGGCGACGAAAACAATTCCAACGTGCGTCACCCCTCCCATT AAATGCTTCCCTGTCTTCTCCTTTTTCCCCCCTCGTCTCTGCTCTCCGCC TCCGCTGCCGTTGCTGGTATTCGGACGGACACCTCCTCGTGCCGTTCTCT CACTCTCGCCCAAAAATCCAGACGCGCCAGCCCCGACCCCATCGCCCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20165:2..1651-

>mRNA_Ecto-sp13_S_contig20165.6609.1 ID=mRNA_Ecto-sp13_S_contig20165.6609.1|Name=mRNA_Ecto-sp13_S_contig20165.6609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20165:2..1651- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTTCGGCGAAGGCCTAGGGGCGGAGAACTGCTGCGTGAGCGACATTGT
GGAACACGGCGAGCTCTGCTCCATTGCTCTCGAGGCGCCGTGCTACATCG
ACGACTCCGCCCCTGCGCCTTCGCCGGTCGCCATGCCCACCGCACCTGTC
GCCGAGCCCACTGCACCTGTCGCTGAGCCCACGGTACCTGTCGCCGAACC
TACTGCACCCACCGAGCCAACTTGCAGCACCGGCATCCCGGGAATCGAGT
CCTCGGACAGCATGGTCTGTTGCCCGGTTGGCTGCACCATGTGCGGCGGT
TCTGGTTGCTCCACCGTGGGAATGCCAGACTACGGCGCCGAGTCCTGCTG
CTCCTCCGACGTCCTTTCCACTGGAGCGTGGTGCAGCGAGAAGGAGGAGG
CGCCGTGTGTACTCGTTGACGCGCCAGCCCCGACCCCATCGCCCGTC
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