mRNA_Ecto-sp13_S_contig20165.6609.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 215 bits (547), Expect = 7.430e-62 Identity = 132/149 (88.59%), Postives = 135/149 (90.60%), Query Frame = 1
Query: 1 EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPSPV 447
EFG GLGA+NCCVSDIVEHGE CSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSD VCCP GCTMCGGSGCSTVGMPDYG ESCCSSD+LSTGA CSE EAPCVL D TP+PV
Sbjct: 1301 EFGGGLGADNCCVSDIVEHGEPCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGAVCCPTGCTMCGGSGCSTVGMPDYGPESCCSSDILSTGASCSETGEAPCVLADVVL-TPAPV 1448
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 131 bits (329), Expect = 1.570e-32 Identity = 105/211 (49.76%), Postives = 115/211 (54.50%), Query Frame = 1
Query: 1 EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTE-----------------------------------------------------------PT-----CSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPS 441
EFG GLG +NCC I E+GELCS+AL APCY+D AP P+PV XXXXXXXXXXXXXXXXXXXXXX PT CSTGI GIESSD VCCP+GCT CGG GCSTVG+P+YGAESCC SDVLS G CS EEAPCVL + P P P+
Sbjct: 476 EFGGGLGEDNCCAVRIEEYGELCSVALAAPCYVD--APPPTPVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPAPSEMPVMAPTDEVVVCSTGIRGIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLDETPTPEPN 684
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 119 bits (298), Expect = 2.420e-28 Identity = 93/150 (62.00%), Postives = 106/150 (70.67%), Query Frame = 1
Query: 1 EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPT--CSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPSP 444
+FG+GLGAENCC SDIV++GELCSIALEAPCY+D+ P P P XXXXXXXXXXXXXXXXXXXXXX EPT CS GIPGI+S ++ CC C CGGS C G GAE+CC SD++ G CS EAPC L D P P P+P
Sbjct: 571 QFGDGLGAENCCESDIVDYGELCSIALEAPCYLDE--PTPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPTDLCSNGIPGIQSGNA--CCLAECGGCGGSDCDQFG-DGLGAENCCESDIVDYGELCSIALEAPCYL-DEPTPEPTP 714
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 107 bits (268), Expect = 1.290e-26 Identity = 68/145 (46.90%), Postives = 74/145 (51.03%), Query Frame = 1
Query: 1 EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPT--CSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPA 429
E G GLG NCC +I E GELCSI LEAPC +D SAPAPSPVA P A TEPT CS G PGI+S S CC C CGG GC G GA+ CC SD+ G CS APC + D A
Sbjct: 63 ELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVAPV--------------------TEPTDVCSNGFPGIQSGVS--CCLAECGECGGRGCGEFG-GGLGADKCCESDIEEYGELCSIALAAPCYIDDGAA 184
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 111 bits (277), Expect = 1.590e-25 Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 223 CSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMPDYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPSP 444
CSTGIPGIESSD VCCP+ CT CGG GCSTVG+P+YGAESCC DV S G CS EEAPCVL D +PT +P
Sbjct: 676 CSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGAESCCELDVQSAGVSCSVSEEAPCVLDDVLSPTETP 749
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.860e-16 Identity = 49/145 (33.79%), Postives = 69/145 (47.59%), Query Frame = 1
Query: 13 GLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAPAPTPSP 444
GL +CC + E C EAPC I S P PSP + T CS G+ GI+ + +VCCP+GC CGG+GC+T G SCC + ++G +C E +APC++ +PAP+P+P
Sbjct: 228 GLDGSSCCGGGVKASDEYCDETNEAPCIIG-SRPTPSPTSANT---------------------------CSNGLEGIDGN-GVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCIIGSSPAPSPTP 343
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 1.370e-11 Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 220 TCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAP 426
TCS G+ GI+ + +VCCP+ C CGGSGC+ G GAESCC S V ++G +C + +EAPC++ +P
Sbjct: 526 TCSNGVQGIDGN-GIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCIIGSSP 594
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 1.200e-10 Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 211 TEPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVL 414
T TCS G+ GI+ + +VCCP+ C CGG+GC+T G G+ESCC + ++GA+C + EAPC++
Sbjct: 541 TVETCSNGLEGIDGN-GVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII 608
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 3.830e-10 Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 214 EPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAP 426
E TC GI GI+ +VCCP+ C CGG+GCST G GA+SCC V S+G +C + EAPC+ AP
Sbjct: 314 ESTCRDGIEGIDGR--VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCIYGSAP 383
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 3.940e-10 Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 214 EPTCSTGIPGIESSDSMVCCPVGCTMCGGSGCSTVGMP-DYGAESCCSSDVLSTGAWCSEKEEAPCVLVDAP 426
E TC GI GI+ +VCCP+ C CGG+GCST G GA+SCC V S+G +C + EAPC+ AP
Sbjct: 336 ESTCRDGIEGIDGR--VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCIYGSAP 405 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20165.6609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20165.6609.1 >prot_Ecto-sp13_S_contig20165.6609.1 ID=prot_Ecto-sp13_S_contig20165.6609.1|Name=mRNA_Ecto-sp13_S_contig20165.6609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp EFGEGLGAENCCVSDIVEHGELCSIALEAPCYIDDSAPAPSPVAMPTAPVback to top mRNA from alignment at Ecto-sp13_S_contig20165:2..1651- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20165.6609.1 ID=mRNA_Ecto-sp13_S_contig20165.6609.1|Name=mRNA_Ecto-sp13_S_contig20165.6609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20165:2..1651- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20165:2..1651- >mRNA_Ecto-sp13_S_contig20165.6609.1 ID=mRNA_Ecto-sp13_S_contig20165.6609.1|Name=mRNA_Ecto-sp13_S_contig20165.6609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20165:2..1651- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |