mRNA_Ecto-sp13_S_contig2016.6606.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2016.6606.1
Unique NamemRNA_Ecto-sp13_S_contig2016.6606.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2016.6606.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 9.660e-25
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 IKKREAWAGDDKKVGAAVLVAIKAADRAPFEKFVNMYFPGCESFIMDSVKFLNGP 165
            +KKREAWAGDD K+GAAVLVAIK ADRAPFE+FVNMYFPGCESFIMDSVKFL+GP
Sbjct:  482 MKKREAWAGDDGKMGAAVLVAIKDADRAPFEEFVNMYFPGCESFIMDSVKFLDGP 536
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2016.6606.1 vs. uniprot
Match: A0A6H5JCR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR8_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.570e-24
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 IKKREAWAGDDKKVGAAVLVAIKAADRAPFEKFVNMYFPGCESFIMDSVKFLNGP 165
            +KKREAWA DDKKV AAVLVAIKAADRAPFEKFVNMYFP CESFIMDSVKFL GP
Sbjct:  474 MKKREAWADDDKKVRAAVLVAIKAADRAPFEKFVNMYFPACESFIMDSVKFLCGP 528
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2016.6606.1 vs. uniprot
Match: D7FIX8_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX8_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.180e-7
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    7 KREAWAGDDKKVGA--AVLVAIKAADRAPFEKFVNMYFPGCESFIMDSVKFL 156
            KR  WA D+K  G      V IKA DR  FE+FV+MYF GCESFIM+ V  L
Sbjct:  111 KRVRWADDEKLEGMNETPRVTIKAGDRFAFEEFVDMYFKGCESFIMEHVSLL 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2016.6606.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.680e-6
Identity = 28/50 (56.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    1 IKKREAWAGDDKKVGAA-VLVAIKAADRAPFEKFVNMYFPGCESFIMDSV 147
            I KR AWAG +   G     V IK  DR  FE+FV+MYF GCESFIM  V
Sbjct:  521 IAKRAAWAGGENLQGMKETRVTIKPGDRVAFEEFVDMYFKGCESFIMAHV 570
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2016.6606.1 vs. uniprot
Match: A0A6H5JD55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD55_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 2.050e-5
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   10 REAWA--GDDKKVGAAVLVAIKAADRAPFEKFVNMYFPGCESFIMDSVKFL 156
            R +WA   DD++      V IK  DRA FE+FV++YF GCES IM+ V+ L
Sbjct:  409 RASWARGDDDQEANKTPRVTIKPCDRAEFEEFVDIYFKGCESLIMEYVESL 459
[Close]
BLAST of mRNA_Ecto-sp13_S_contig2016.6606.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 7.220e-5
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 IKKREAWAGDDK------KVGAAVLVAIKAADRAPFEKFVNMYFPGCESFIMDSVKFLN 159
            I KR AWA  ++      K      V IKA D A FE+FV+MYFP CE+F+M+ V  L+
Sbjct:  464 IAKRAAWARSEEGPVRNEKRRVKPRVTIKAGDCAAFEEFVDMYFPCCETFMMEHVDLLD 522
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2016.6606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FIV0_ECTSI9.660e-2589.09TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JCR8_9PHAE4.570e-2490.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX8_ECTSI1.180e-755.77BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LAP0_9PHAE1.680e-656.00TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JD55_9PHAE2.050e-549.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX7_ECTSI7.220e-545.76BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2016contigEcto-sp13_S_contig2016:884..1060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_007680.1
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.3735592-CDS-Ecto-sp13_S_contig2016:883..10601681463013.3735592-CDS-Ecto-sp13_S_contig2016:883..1060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2016 884..1060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2016.6606.1prot_Ecto-sp13_S_contig2016.6606.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2016 884..1060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2016.6606.1

>prot_Ecto-sp13_S_contig2016.6606.1 ID=prot_Ecto-sp13_S_contig2016.6606.1|Name=mRNA_Ecto-sp13_S_contig2016.6606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
IKKREAWAGDDKKVGAAVLVAIKAADRAPFEKFVNMYFPGCESFIMDSVK
FLNGPKRA*
back to top

mRNA from alignment at Ecto-sp13_S_contig2016:884..1060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2016.6606.1 ID=mRNA_Ecto-sp13_S_contig2016.6606.1|Name=mRNA_Ecto-sp13_S_contig2016.6606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2016:884..1060+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAAGAAGCGTGAGGCCTGGGCTGGTGACGACAAAAAGGTGGGGGCGGC
GGTCCTCGTTGCCATCAAGGCCGCTGATCGCGCGCCCTTCGAGAAGTTCG
TCAACATGTACTTTCCAGGCTGCGAGAGCTTCATCATGGACAGCGTGAAG
TTCTTGAATGGGCCAAAACGGGCCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2016:884..1060+

>mRNA_Ecto-sp13_S_contig2016.6606.1 ID=mRNA_Ecto-sp13_S_contig2016.6606.1|Name=mRNA_Ecto-sp13_S_contig2016.6606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2016:884..1060+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAAGAAGCGTGAGGCCTGGGCTGGTGACGACAAAAAGGTGGGGGCGGC
GGTCCTCGTTGCCATCAAGGCCGCTGATCGCGCGCCCTTCGAGAAGTTCG
TCAACATGTACTTTCCAGGCTGCGAGAGCTTCATCATGGACAGCGTGAAG
TTCTTGAATGGGCCAAAACGGGCCTGA
back to top