mRNA_Ecto-sp13_S_contig20159.6605.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20159.6605.1
Unique NamemRNA_Ecto-sp13_S_contig20159.6605.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20159.6605.1 vs. uniprot
Match: D8LN20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN20_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 7.280e-72
Identity = 143/166 (86.14%), Postives = 148/166 (89.16%), Query Frame = 1 
Query:   13 TRGLKPERVEPPPSMFKYQLEGDSISGNSYYDPYSVTMDNMSVFSAASSVVNPQSVRGIVHR-----------GMFGGKPHDNTNIFDANPFNSVNTNSAGXXXXXXXXXXXXXXXXXXXXXXXXXLGTAPSGPGGVVPGTIQGALPQFHFNSALNPAEYGALPNS 477
             RGLKPER+EPPPSMFKYQLEGDSISG+SYYDPYSVTMDNMSVFSAASSVVNPQSVRGIVHR           GMFGGKPHDNTNIFDANPFNSV TN   XXXXXXXXXXXXXXXXXXXXXXX  LGTAPSGPGGVVPGTIQGALPQFHFNSAL+PAE+GALP+S
Sbjct:    8 ARGLKPERMEPPPSMFKYQLEGDSISGSSYYDPYSVTMDNMSVFSAASSVVNPQSVRGIVHRLWNDFDNRFMRGMFGGKPHDNTNIFDANPFNSVATNXXXXXXXXXXXXXXXXXXXXXXXXXXG-LGTAPSGPGGVVPGTIQGALPQFHFNSALSPAEHGALPSS 172
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BLAST of mRNA_Ecto-sp13_S_contig20159.6605.1 vs. uniprot
Match: A0A6H5KYD3_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD3_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 2.330e-39
Identity = 80/100 (80.00%), Postives = 84/100 (84.00%), Query Frame = 3 
Query:    3 AVLHEGAQARARGAPAEHVQVPARGRFYQRELVLRPLQRHNGQYERLQCRELRGKPSVC*RDSAQ-----------GYVRGQAPRQYQHLRREPFQQRQH 269
            AVLHEGAQARA GAPA+HVQVPARGRFYQRELVLRPLQRH+GQ+ERLQC ELRGKPSVC R SAQ           GYVRGQAPRQYQH RREPFQQR+H
Sbjct:  475 AVLHEGAQARAHGAPAKHVQVPARGRFYQRELVLRPLQRHDGQHERLQCLELRGKPSVCQRHSAQVVERLRQPFHEGYVRGQAPRQYQHFRREPFQQRRH 574
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20159.6605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN20_ECTSI7.280e-7286.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYD3_9PHAE2.330e-3980.00Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20159contigEcto-sp13_S_contig20159:1..2419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size477
Hectar predicted targeting categoryother localisation
Exons3
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.322365-CDS-Ecto-sp13_S_contig20159:0..2801681463013.322365-CDS-Ecto-sp13_S_contig20159:0..280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20159 1..280 -
1681463013.333187-CDS-Ecto-sp13_S_contig20159:1433..15631681463013.333187-CDS-Ecto-sp13_S_contig20159:1433..1563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20159 1434..1563 -
1681463013.3438756-CDS-Ecto-sp13_S_contig20159:2352..24191681463013.3438756-CDS-Ecto-sp13_S_contig20159:2352..2419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20159 2353..2419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20159.6605.1prot_Ecto-sp13_S_contig20159.6605.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20159 1..2419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20159.6605.1

>prot_Ecto-sp13_S_contig20159.6605.1 ID=prot_Ecto-sp13_S_contig20159.6605.1|Name=mRNA_Ecto-sp13_S_contig20159.6605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MPFFTRGLKPERVEPPPSMFKYQLEGDSISGNSYYDPYSVTMDNMSVFSA
ASSVVNPQSVRGIVHRGMFGGKPHDNTNIFDANPFNSVNTNSAGGGSGGG
GGDGGGSVGGPAAGQAAGGLGTAPSGPGGVVPGTIQGALPQFHFNSALNP
AEYGALPNS
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mRNA from alignment at Ecto-sp13_S_contig20159:1..2419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20159.6605.1 ID=mRNA_Ecto-sp13_S_contig20159.6605.1|Name=mRNA_Ecto-sp13_S_contig20159.6605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20159:1..2419- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTTCTTCACGAGGGGGCTCAAGCCCGAGCGCGTGGAGCCCCCGCC
GAGCATGTTCAAGTACCGTGAGTGTGCCGTGTGGTCGTGGCAGTGAGGGT
AGAGGTAGAGGGCAGCCAACCCGGGTGCATTGGTTGCGTCGAGATTCGTG
TCACTTCGTTCCTTACCGACCACGATTGTTCAAAGACCGTGAGTGTGCCG
TGTAGTCGTGGCCGTGGCCGTGAGGGCAGAGGGCAGCCAAACCCGAACAC
ATGGTTGCGGCGAGATTCATGTCAATTTGTATTCCTCACCAACCATGACT
GATTTATCATTTGTTGGCATTTCTTGTTTAAATCGTGCATGTCTATGTGT
GTTTTCATGGTTGGCGTCGACCGCACCTTCATCAGCTGACCAATAAAAAT
TACGTCAGTTTTTAGCGGGATGGATGAAAACACGAGCACGTTCAAGTGTG
TGTGTGTGTTTCATTTTGTTCGTTCGGTCAATTTTCTTTTGTGAATATTT
GTGTTAGGTCGTTTTTTCTTTTGCTGTTTCCGTTAAGAGAACAGTGTTCA
CTTCACACACACACGCCCTTTTGCCCCTTTCTGTCAGTTCGTAGCCACGA
GAAGGTGGTAACTGTACTGGGGCATAAGAAGTGGGCTGAAAAAGCGAGAA
GTGATATCGATATCATAGATAGACTAGGGAAGACATTTTTGAGTTACCTT
TGGTAAGGTAGGAAGGAGCAATTGGCCATCGGTGATCGGTCCTGTGGGAA
CAATGCCCCGTTATCTAGCGGACGCGTGAACAATGGCATGCGACACATAA
TCAGCACGCCCGCGCCCCCCCCCCCCCCCCCGCCGCTCTTCGTTCGTTCT
TGGCAGAGCTAGAGGGAGATTCTATCAGCGGGAACTCGTACTACGACCCC
TACAGCGTCACAATGGACAATATGAGCGTCTTCAGTGCCGCGAGCTCCGT
GGTAAACCCTCAGTCTGTTAGAGGGATAGTGCACAGGTAAGGAGAGGAGC
GGAGCTGGGGTCTCTTTCTCTCTTTTTTGTTGGAGCGACACAACAAATCC
AAACTTTTCCACGGGCGAGAGTCGAGGATAAATTGGCAATGGACCAATAC
ATCAATTGGCGGAGATTTTATGTGCATATGTCCATGGGGCAGCAGACGGA
GTTGATGGTCACTGGTAAGAAGCTGCATGCGTGTGTCCGTTCCTTTTGTT
TTGGCGCCCGTCTACAAGCATGTTGACGTAGGCATTAGCCGGGGTCACAG
GTGAGGGATAGTGCACAGTTGAGGAGCGCGAGTCTCTCGGTATTTTTCGC
GTCCCCGAAAATGAGAATATGAATATTAAAAACAAACAAACAACGAAACA
CACCCAACCTTTTGCGAGAGTAAGCCACAAGTTAGACGGTCGGCGCGCCG
CATGCTTGTACATACATGGATCCAACAAAGGCATAACATATATCTATCTC
ACGGGGCCCCGGCGAAGAGATCCCCGTTCGCCAGAAGTACTTTTCCCCCA
TTGTTTCTTTCTCTTTTTTTGCGCTCCGTTTTTGGTTGTTGCGTGAGCAC
ATCCTTTTCTGGGGGGTGAATTATGCCTGATAATGCTACCTTACGGCCGA
ATCACACACAGGGTTTCGCTTCCAAGTTTTGCAAGTGTCCAAATTCCGAC
TTTCCAAATTTGGAACTAATTCGTTCCAGACTTTTCGGTGCCAGTCGTTT
CCAAATTTAACAACATTCCAAATTTTTCCTACGCCGTAAGTCGGGGTTCA
ACGGTCTACGGATTTGGAAAATGCATTTCAACGGCCCATAGGCTCGCCCC
ACCCAGCACCATACCAGTTGCCGCGTCAAACCCAGGTCTAGCAGTTACAC
AGCGGGCGCATCCCAAAGGAATTTAGAATCATGCGAGACCAGCCAGTTCG
CATCTAGTCTCTTGTAGGTACGCCGATCTCGCGAAACTTCTCGCCCTTCG
CACTCTCCCTCATCGCTTACCGTTTGCCACACCGACCTTTCCCCCCCGGG
CTGTGCGCGCCGCCCTGACTCTCTCTCCTCCAACGCAAACGTCTTGCTAC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCACCAACACGTTGTGGNNNNNNNNNNCCGTTTCATGAGGGGTATGTTCG
GGGGCAAGCCCCACGACAATACCAACATCTTCGACGCGAACCCTTTCAAC
AGCGTCAACACTAATAGCGCAGGCGGCGGGAGCGGCGGCGGCGGTGGCGA
CGGCGGCGGAAGCGTCGGGGGTCCCGCGGCTGGGCAGGCGGCAGGGGGGT
TAGGGACCGCACCCTCCGGTCCTGGGGGGGTTGTTCCGGGAACGATCCAG
GGAGCGCTCCCGCAGTTCCACTTCAACTCCGCGCTCAACCCTGCGGAGTA
CGGCGCCCTCCCCAACTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20159:1..2419-

>mRNA_Ecto-sp13_S_contig20159.6605.1 ID=mRNA_Ecto-sp13_S_contig20159.6605.1|Name=mRNA_Ecto-sp13_S_contig20159.6605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20159:1..2419- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTTCTTCACGAGGGGGCTCAAGCCCGAGCGCGTGGAGCCCCCGCC
GAGCATGTTCAAGTACCAGCTAGAGGGAGATTCTATCAGCGGGAACTCGT
ACTACGACCCCTACAGCGTCACAATGGACAATATGAGCGTCTTCAGTGCC
GCGAGCTCCGTGGTAAACCCTCAGTCTGTTAGAGGGATAGTGCACAGGGG
TATGTTCGGGGGCAAGCCCCACGACAATACCAACATCTTCGACGCGAACC
CTTTCAACAGCGTCAACACTAATAGCGCAGGCGGCGGGAGCGGCGGCGGC
GGTGGCGACGGCGGCGGAAGCGTCGGGGGTCCCGCGGCTGGGCAGGCGGC
AGGGGGGTTAGGGACCGCACCCTCCGGTCCTGGGGGGGTTGTTCCGGGAA
CGATCCAGGGAGCGCTCCCGCAGTTCCACTTCAACTCCGCGCTCAACCCT
GCGGAGTACGGCGCCCTCCCCAACTCT
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