mRNA_Ecto-sp13_S_contig2015.6604.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2015.6604.1
Unique NamemRNA_Ecto-sp13_S_contig2015.6604.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2015.6604.1 vs. uniprot
Match: A0A6H5JC79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC79_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 2.850e-89
Identity = 182/227 (80.18%), Postives = 186/227 (81.94%), Query Frame = 1 
Query:    1 MAGWPRKRERGGEENSSMNSFIPMMSATGALGRESPDSEMSSSSGSGGSDRSINRGIKRMRLDNQXXXXXXXXXXXXXXXXXXXXXX-GHHPLSAFDRFSPSSSAATGVPATTTLHHPRPLTLGRAASSASTHNAPPTQGVQRSSSGGGTLHPVGGTPSGQQQRSQSFDSCVAFPPFXXXXXAQARYVRGIRVEADAPSDVDYSNVNHALRQLHMERRMMAAARGGG 678
            MAGWPRKRER GEENSSM+SFIPMMSA+GALGRESPDSEMSSSSGSGGSDRSINRGIKRMRL+NQXXXXXXXXXXXXXXXXXXXX   GHHPLSAFDRFSPSSSAATGV AT TLHHPRPLTLGRAASSASTH+APPTQ VQRSS GGGTL P                               ARYVRGIRVEADAPSDVDYSNVNHALRQLHMERRMMAAARG G
Sbjct:   65 MAGWPRKRERAGEENSSMDSFIPMMSASGALGRESPDSEMSSSSGSGGSDRSINRGIKRMRLNNQXXXXXXXXXXXXXXXXXXXXPHQGHHPLSAFDRFSPSSSAATGVLATATLHHPRPLTLGRAASSASTHDAPPTQAVQRSS-GGGTLPP-------------------------------ARYVRGIRVEADAPSDVDYSNVNHALRQLHMERRMMAAARGEG 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2015.6604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JC79_9PHAE2.850e-8980.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2015contigEcto-sp13_S_contig2015:13078..13764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size688
Hectar predicted targeting categoryother localisation
Exons1
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.1617062-CDS-Ecto-sp13_S_contig2015:13077..137641681463013.1617062-CDS-Ecto-sp13_S_contig2015:13077..13764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2015 13078..13764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2015.6604.1prot_Ecto-sp13_S_contig2015.6604.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2015 13078..13764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2015.6604.1

>prot_Ecto-sp13_S_contig2015.6604.1 ID=prot_Ecto-sp13_S_contig2015.6604.1|Name=mRNA_Ecto-sp13_S_contig2015.6604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
MAGWPRKRERGGEENSSMNSFIPMMSATGALGRESPDSEMSSSSGSGGSD
RSINRGIKRMRLDNQQQQQQHPDCLHQQEQQQQQQQQGHHPLSAFDRFSP
SSSAATGVPATTTLHHPRPLTLGRAASSASTHNAPPTQGVQRSSSGGGTL
HPVGGTPSGQQQRSQSFDSCVAFPPFPPRPPAQARYVRGIRVEADAPSDV
DYSNVNHALRQLHMERRMMAAARGGGRQQ
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mRNA from alignment at Ecto-sp13_S_contig2015:13078..13764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2015.6604.1 ID=mRNA_Ecto-sp13_S_contig2015.6604.1|Name=mRNA_Ecto-sp13_S_contig2015.6604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2015:13078..13764+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGGGTGGCCAAGGAAGCGCGAAAGAGGCGGCGAGGAAAACAGCAG
TATGAATAGCTTCATCCCGATGATGAGCGCTACCGGTGCCCTGGGGAGAG
AGTCCCCCGACTCCGAGATGTCTTCCTCTTCCGGCAGCGGCGGCTCGGAC
CGCTCCATAAACCGCGGGATCAAGAGGATGAGGCTCGACAACCAGCAGCA
GCAGCAGCAGCACCCCGACTGCCTCCACCAACAGGAGCAACAGCAGCAGC
AGCAGCAACAAGGACACCACCCGCTGTCCGCCTTCGACCGCTTCTCCCCT
TCCTCCTCAGCCGCCACGGGCGTTCCCGCAACCACTACGCTGCACCACCC
CCGCCCCCTAACGCTAGGCCGAGCGGCCTCCTCCGCCAGCACCCACAACG
CCCCCCCGACCCAGGGGGTGCAGAGAAGCTCCTCGGGCGGCGGCACCCTG
CACCCCGTGGGTGGAACTCCCTCCGGACAACAACAACGATCCCAGTCGTT
CGACTCGTGCGTAGCGTTCCCGCCGTTCCCACCTCGACCCCCGGCACAGG
CCAGGTACGTCCGGGGTATCCGCGTGGAGGCCGACGCCCCCTCGGACGTC
GACTACTCCAACGTCAACCACGCGCTGCGGCAGCTGCACATGGAGAGGAG
GATGATGGCCGCGGCAAGGGGGGGGGGCAGGCAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2015:13078..13764+

>mRNA_Ecto-sp13_S_contig2015.6604.1 ID=mRNA_Ecto-sp13_S_contig2015.6604.1|Name=mRNA_Ecto-sp13_S_contig2015.6604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2015:13078..13764+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGGGTGGCCAAGGAAGCGCGAAAGAGGCGGCGAGGAAAACAGCAG
TATGAATAGCTTCATCCCGATGATGAGCGCTACCGGTGCCCTGGGGAGAG
AGTCCCCCGACTCCGAGATGTCTTCCTCTTCCGGCAGCGGCGGCTCGGAC
CGCTCCATAAACCGCGGGATCAAGAGGATGAGGCTCGACAACCAGCAGCA
GCAGCAGCAGCACCCCGACTGCCTCCACCAACAGGAGCAACAGCAGCAGC
AGCAGCAACAAGGACACCACCCGCTGTCCGCCTTCGACCGCTTCTCCCCT
TCCTCCTCAGCCGCCACGGGCGTTCCCGCAACCACTACGCTGCACCACCC
CCGCCCCCTAACGCTAGGCCGAGCGGCCTCCTCCGCCAGCACCCACAACG
CCCCCCCGACCCAGGGGGTGCAGAGAAGCTCCTCGGGCGGCGGCACCCTG
CACCCCGTGGGTGGAACTCCCTCCGGACAACAACAACGATCCCAGTCGTT
CGACTCGTGCGTAGCGTTCCCGCCGTTCCCACCTCGACCCCCGGCACAGG
CCAGGTACGTCCGGGGTATCCGCGTGGAGGCCGACGCCCCCTCGGACGTC
GACTACTCCAACGTCAACCACGCGCTGCGGCAGCTGCACATGGAGAGGAG
GATGATGGCCGCGGCAAGGGGGGGGGGCAGGCAGCAG
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