mRNA_Ecto-sp13_S_contig20149.6600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20149.6600.1
Unique NamemRNA_Ecto-sp13_S_contig20149.6600.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20149.6600.1 vs. uniprot
Match: D8LCS4_ECTSI (Selenoprotein W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS4_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 9.700e-48
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 GYVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTGELLHSKKTRGQGRCEDPREVQALVDQIQKFLEAS 231
            GYVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTGELLHSKKTRGQGRCEDPREVQALVDQIQKFL++S
Sbjct:   70 GYVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTGELLHSKKTRGQGRCEDPREVQALVDQIQKFLDSS 146
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BLAST of mRNA_Ecto-sp13_S_contig20149.6600.1 vs. uniprot
Match: A0A2R5GI96_9STRA (Selenoprotein W n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI96_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.660e-20
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    4 YVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTGELLHSKKTRGQGRCEDPREVQALVDQIQKFLEA 228
            Y +++  L  QLE  FGD +  +  EDPG TG FEV L  TG+LLHSK TRGQG+C+   EVQA+VD+IQ FL++
Sbjct:  327 YSKYFRALKQQLEEEFGDDVKVVGQEDPGTTGNFEVTLTETGDLLHSKSTRGQGKCQSAAEVQAIVDKIQDFLDS 401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20149.6600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCS4_ECTSI9.700e-4897.40Selenoprotein W n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A2R5GI96_9STRA1.660e-2054.67Selenoprotein W n=1 Tax=Hondaea fermentalgiana Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20149contigEcto-sp13_S_contig20149:540..773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score65.1
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog2850.Phatr48600
Model size234
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Protein of unknown function (DUF1295)
EggNOG OGs2XCKN@2836,COG3752@1,KOG4650@2759
Ec32 ortholog descriptionSelenoprotein W
Ec32 orthologEc-03_001830.1
Cds size234
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.0613935-CDS-Ecto-sp13_S_contig20149:539..7731681463013.0613935-CDS-Ecto-sp13_S_contig20149:539..773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20149 540..773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20149.6600.1prot_Ecto-sp13_S_contig20149.6600.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20149 540..773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20149.6600.1

>prot_Ecto-sp13_S_contig20149.6600.1 ID=prot_Ecto-sp13_S_contig20149.6600.1|Name=mRNA_Ecto-sp13_S_contig20149.6600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
GYVRFYNRLTPQLEAVFGDRISFIQTEDPGVTGRFEVVLRNTGELLHSKK
TRGQGRCEDPREVQALVDQIQKFLEAS*
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mRNA from alignment at Ecto-sp13_S_contig20149:540..773-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20149.6600.1 ID=mRNA_Ecto-sp13_S_contig20149.6600.1|Name=mRNA_Ecto-sp13_S_contig20149.6600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20149:540..773- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTACGTGCGGTTTTACAACCGCCTGACGCCCCAGCTGGAGGCGGTGTT
CGGCGACCGCATCAGCTTCATCCAGACCGAGGACCCCGGGGTCACCGGGC
GCTTCGAGGTGGTGCTGCGCAACACCGGGGAGCTGCTACACAGCAAGAAG
ACCCGCGGCCAGGGCCGCTGCGAGGACCCCCGCGAGGTGCAGGCCCTGGT
CGACCAAATCCAGAAGTTCTTGGAAGCTTCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20149:540..773-

>mRNA_Ecto-sp13_S_contig20149.6600.1 ID=mRNA_Ecto-sp13_S_contig20149.6600.1|Name=mRNA_Ecto-sp13_S_contig20149.6600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20149:540..773- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTACGTGCGGTTTTACAACCGCCTGACGCCCCAGCTGGAGGCGGTGTT
CGGCGACCGCATCAGCTTCATCCAGACCGAGGACCCCGGGGTCACCGGGC
GCTTCGAGGTGGTGCTGCGCAACACCGGGGAGCTGCTACACAGCAAGAAG
ACCCGCGGCCAGGGCCGCTGCGAGGACCCCCGCGAGGTGCAGGCCCTGGT
CGACCAAATCCAGAAGTTCTTGGAAGCTTCGTAG
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