mRNA_Ecto-sp13_S_contig20148.6599.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20148.6599.1
Unique NamemRNA_Ecto-sp13_S_contig20148.6599.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: A0A6H5JFL7_9PHAE (DUF4821 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL7_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 6.440e-49
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    4 PPIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLVKV 267
            P + +RPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDY+HLVK+
Sbjct:  211 PTLAVRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYDHLVKI 298
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: D7FYQ8_ECTSI (DUF4821 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYQ8_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.820e-48
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    4 PPIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLVK 264
            P + IRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGR CGLLATSSDLELGLLQSCFQLDDYEHLVK
Sbjct:  251 PTLAIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRTCGLLATSSDLELGLLQSCFQLDDYEHLVK 337
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: F0Y0R3_AURAN (DUF4821 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R3_AURAN)

HSP 1 Score: 108 bits (269), Expect = 1.870e-25
Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    4 PPIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLV 261
            P + IR ACVED DDL+P+F  QS++LSA +G+FFLA+MIE QD+ N+A+ A V GRA GLLA S+D+++ +LQ CFQL+ Y +LV
Sbjct:  190 PTLLIRAACVEDSDDLLPIFEQQSEVLSANFGDFFLAEMIEAQDDMNRAVVATVDGRAVGLLAASTDIDVAMLQKCFQLEPYGNLV 275
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: A0A812N6Q9_9DINO (CFAP61 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812N6Q9_9DINO)

HSP 1 Score: 99.4 bits (246), Expect = 7.410e-25
Identity = 45/86 (52.33%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    7 PIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLVK 264
            P+ IR A VEDHD+L  VF AQS++++A YG+FF+A+++E Q++EN+AL A V GRA GL+  +SD+++ +L  CFQLD Y++L+K
Sbjct:    4 PLGIRIARVEDHDNLAAVFDAQSEVVTAVYGDFFIAELVEAQNDENRALVAEVDGRAVGLMCLTSDVDINVLAQCFQLDPYDNLLK 89
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: A0A835ZCT4_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 8.880e-25
Identity = 46/84 (54.76%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:   10 IQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLV 261
            + +R AC+EDHDDL+P+F  QS+ L+ TYGEF+LAD+I  QD++N+AL AL   RACGL++ SS +++ LLQ CF+L  Y+ LV
Sbjct:  217 LAVRAACIEDHDDLLPIFEQQSEALTQTYGEFYLADVISAQDDQNRALVALTGQRACGLMSASSSVDVALLQRCFELQAYDRLV 300
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: A0A812U9P1_9DINO (CFAP61 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812U9P1_9DINO)

HSP 1 Score: 99.4 bits (246), Expect = 1.650e-24
Identity = 45/86 (52.33%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    7 PIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLVK 264
            P+ IR A VEDHD+L  VF AQS++++A YG+FF+A+++E Q++EN+AL A V GRA GL+  +SD+++ +L  CFQLD Y++L+K
Sbjct:   35 PLGIRIARVEDHDNLAAVFDAQSEVVTAVYGDFFIAELVEAQNDENRALVAEVDGRAVGLMCLTSDVDINVLAQCFQLDPYDNLLK 120
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: A0A7S1CJA0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJA0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.380e-24
Identity = 47/88 (53.41%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    4 PPIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLVKV 267
            P + IRPA VEDHDDL+P+F +QS++L+  YGEFFLA++IE Q+   +AL A V GRA GL++ + D++LG+LQ CF L  Y +L++V
Sbjct:   90 PTLTIRPARVEDHDDLVPIFNSQSEVLTELYGEFFLAELIEAQNESTRALVAEVDGRAVGLMSLTRDIKLGVLQQCFDLGPYNNLMQV 177
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: A0A812PED0_9DINO (CFAP61 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812PED0_9DINO)

HSP 1 Score: 99.0 bits (245), Expect = 3.460e-23
Identity = 45/86 (52.33%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    7 PIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLVK 264
            P+ IR A VEDHD+L  VF AQS++++A YG+FF+A+++E Q+ EN+AL A V GRA GL+  +SD+++ +L  CFQLD Y++L+K
Sbjct:   35 PLGIRIARVEDHDNLAAVFDAQSEVVTAVYGDFFIAELVEAQNEENRALVAEVDGRAVGLMCLTSDVDINVLAQCFQLDPYDNLLK 120
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: A0A7S3C5N9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C5N9_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 9.380e-23
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    4 PPIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLVKV 267
            P + IR A VEDHDDL+PVF +QS++L+  YGEFF+A++IE QD+ N+AL A V G A GL++ SS++E+GLLQ CF L  Y  L ++
Sbjct:  179 PNLLIREARVEDHDDLVPVFNSQSEVLTERYGEFFIAELIESQDSCNRALVAEVDGHAIGLMSVSSEIEVGLLQQCFDLRPYNDLTRI 266
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BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Match: A0A7S4C2D8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C2D8_CHRCT)

HSP 1 Score: 96.7 bits (239), Expect = 2.550e-22
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    4 PPIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKALAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLVK 264
            P + +R A VEDHDDL+PVF +QS++LS  YGEFF+A++I  QD  N+A+   V G A GL+  SS++++ +LQ CF L+ YE+L+K
Sbjct:  189 PELLVREARVEDHDDLVPVFDSQSEVLSERYGEFFIAELIASQDEVNRAVVGEVDGHAVGLMGCSSEIDVSILQDCFDLEPYENLMK 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20148.6599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFL7_9PHAE6.440e-4993.18DUF4821 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FYQ8_ECTSI1.820e-4895.40DUF4821 domain-containing protein n=1 Tax=Ectocarp... [more]
F0Y0R3_AURAN1.870e-2558.14DUF4821 domain-containing protein n=1 Tax=Aureococ... [more]
A0A812N6Q9_9DINO7.410e-2552.33CFAP61 protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]
A0A835ZCT4_9STRA8.880e-2554.76AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A812U9P1_9DINO1.650e-2452.33CFAP61 protein n=1 Tax=Symbiodinium sp. CCMP2592 T... [more]
A0A7S1CJA0_9STRA2.380e-2453.41Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812PED0_9DINO3.460e-2352.33CFAP61 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A7S3C5N9_9EUKA9.380e-2354.55Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4C2D8_CHRCT2.550e-2250.57Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20148contigEcto-sp13_S_contig20148:291..1302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score166.8
Seed ortholog evalue4.7e-39
Seed eggNOG ortholog2880.D7FYQ8
Preferred nameAK9
Model size267
KEGG rclassRC00002
KEGG koko:K18533
KEGG ReactionR00124,R00127,R00156,R00330,R00570,R00722,R01137,R01547,R01857,R02093,R02326,R02331,R03530
KEGG Pathwayko00230,ko00240,ko01100,ko01110,ko01130,map00230,map00240,map01100,map01110,map01130
KEGG ModuleM00049,M00052,M00053
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006174,GO:0006186,GO:0006725,GO:0006753,GO:0006754,GO:0006756,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009151,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009182,GO:0009185,GO:0009186,GO:0009199,GO:0009200,GO:0009201,GO:0009202,GO:0009205,GO:0009206,GO:0009215,GO:0009216,GO:0009259,GO:0009260,GO:0009262,GO:0009394,GO:0009987,GO:0012505,GO:0015949,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017144,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046031,GO:0046033,GO:0046034,GO:0046056,GO:0046066,GO:0046390,GO:0046483,GO:0046939,GO:0046940,GO:0050145,GO:0055086,GO:0061508,GO:0061565,GO:0061566,GO:0061567,GO:0061568,GO:0061569,GO:0061570,GO:0061571,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.adenylate kinase activity
EggNOG OGsCOG0563@1,KOG3078@2759
EC2.7.4.3,2.7.4.6
Cds size267
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463013.014649-CDS-Ecto-sp13_S_contig20148:290..4371681463013.014649-CDS-Ecto-sp13_S_contig20148:290..437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20148 291..437 +
1681463013.028046-CDS-Ecto-sp13_S_contig20148:1182..13021681463013.028046-CDS-Ecto-sp13_S_contig20148:1182..1302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20148 1183..1302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20148.6599.1prot_Ecto-sp13_S_contig20148.6599.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20148 291..1302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20148.6599.1

>prot_Ecto-sp13_S_contig20148.6599.1 ID=prot_Ecto-sp13_S_contig20148.6599.1|Name=mRNA_Ecto-sp13_S_contig20148.6599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
APPIQIRPACVEDHDDLMPVFAAQSDLLSATYGEFFLADMIELQDNENKA
LAALVQGRACGLLATSSDLELGLLQSCFQLDDYEHLVKV
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mRNA from alignment at Ecto-sp13_S_contig20148:291..1302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20148.6599.1 ID=mRNA_Ecto-sp13_S_contig20148.6599.1|Name=mRNA_Ecto-sp13_S_contig20148.6599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1012bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20148:291..1302+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCACCGATACAGATTCGGCCGGCGTGCGTAGAAGATCACGATGACCT
GATGCCCGTGTTCGCGGCGCAGAGCGACCTCCTCAGCGCGACGTACGGCG
AGTTCTTCTTGGCGGACATGATCGAGCTGCAGGACAACGAAAATAAGGTC
GGTCCGGCAGCAGTCTGACAAAAGGCTTCGGGCTTTTTACCCTCGTGCGG
GCAAAAGCGCAGTCGCGTTCAGCGGCCGTGCGACTAGAACCCATGAACTA
TTTGAAAGCAAGGTAGTAAATTCAGGTTCATCAGGAAAAAATGTCAAGAT
GATCATCGTGCCCGCGTCCACCCGGCAGACGCTTGGAACATGCTCTGGCC
GATCGAATAATCGTTGTTAGTTATTTAGATAGCGAAAAGAAGACCAGGAA
CTAATGTAGGCTCGGGAGATTTCTCGTAGAGTTCCGCATATGCTTGGTGT
TGCGACTGGTCCTCATCGAAGTCACATCTATGTTCGCTTTTGGTCGCGTG
CGTTATGTAGCGGCTACCAAAGGTATCAAAGCAGCACGTGTATCTTTAAC
AATCCAGAAAAAGCTACGGTAGTCCAAAACGTTGCCCGCCTGGTGACTCC
AGTCCACGTAATCTGAACTCGGGCTGGACGACACACCAAATCACAACCAG
CGGGGTTATTTTTCTCCTGCATACTACTCTTCTACAACTCCGCGCTCGAC
CTTCGACATACAGCTGAACCCGAGATGGTATTTGCACCTTGGTTTCATCA
GGCTTCGACTACAGAAATTCGTTGCTCTGCCTTTCAGATAAGCGCGCGTG
GCAGGGATCAGAACGGCAAAAAGAGCAACGATGCAACAACACGACCACCA
CTCCCTTACAACAGCAACGCATCGTGTGTGCATGCAAATCAGGCGCTAGC
GGCGCTGGTGCAGGGCCGCGCGTGCGGCCTGCTGGCCACCTCGAGTGACC
TCGAGCTCGGGCTACTCCAGAGCTGCTTTCAACTGGACGACTACGAGCAC
CTCGTAAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20148:291..1302+

>mRNA_Ecto-sp13_S_contig20148.6599.1 ID=mRNA_Ecto-sp13_S_contig20148.6599.1|Name=mRNA_Ecto-sp13_S_contig20148.6599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20148:291..1302+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCACCGATACAGATTCGGCCGGCGTGCGTAGAAGATCACGATGACCT
GATGCCCGTGTTCGCGGCGCAGAGCGACCTCCTCAGCGCGACGTACGGCG
AGTTCTTCTTGGCGGACATGATCGAGCTGCAGGACAACGAAAATAAGGCG
CTAGCGGCGCTGGTGCAGGGCCGCGCGTGCGGCCTGCTGGCCACCTCGAG
TGACCTCGAGCTCGGGCTACTCCAGAGCTGCTTTCAACTGGACGACTACG
AGCACCTCGTAAAGGTA
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