mRNA_Ecto-sp13_S_contig20144.6597.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20144.6597.1
Unique NamemRNA_Ecto-sp13_S_contig20144.6597.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20144.6597.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 8.630e-30
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    4 FGGGEGNSNNSTQSPRATPPGSLVTGVIKSPSNHLAWVGKIAPHGGISAPLTYTVEWPFEKEIEMFF 204
            FGGGEGNSNNST+ P ATP  SLVTGV KSPSNHLAWVGKIAP GG+S PLTYTVEWPFEKEIEM F
Sbjct:  568 FGGGEGNSNNSTRRPPATPAESLVTGVFKSPSNHLAWVGKIAPQGGVSVPLTYTVEWPFEKEIEMLF 634
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BLAST of mRNA_Ecto-sp13_S_contig20144.6597.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 5.860e-29
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 MFGGGEGNSNNSTQSPRATPPGSLVTGVIKSPSNHLAWVGKIAPHGGISAPLTYTVEWPFEKEIEMFF 204
            M+GGGEGN NN+TQ P ATP GSLVTGV+KSPSNHLAWVGKIAP GG+S PL YTVEWPFEKEIE  F
Sbjct:  578 MYGGGEGNINNNTQRPPATPAGSLVTGVMKSPSNHLAWVGKIAPQGGVSIPLKYTVEWPFEKEIETLF 645
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BLAST of mRNA_Ecto-sp13_S_contig20144.6597.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.280e-29
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 MFGGGEGNSNNSTQSPRATPPGSLVTGVIKSPSNHLAWVGKIAPHGGISAPLTYTVEWPFEKEIEMFF 204
            MFG GEGN NNSTQ P ATP GSLVTGVIK+PSNHLAWVGKIAP GG+S PL YT+EWPFEKEI+M F
Sbjct:  535 MFGSGEGNINNSTQHPPATPAGSLVTGVIKNPSNHLAWVGKIAPRGGVSVPLEYTLEWPFEKEIDMSF 602
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BLAST of mRNA_Ecto-sp13_S_contig20144.6597.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.940e-13
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   73 VTGVIKSPSNHLAWVGKIAPHGGISAPLTYTVEWPFEKEIE 195
            V GVIKSPSNHLAWVGKIAP G IS PL YTVEWP  K+IE
Sbjct:  629 VLGVIKSPSNHLAWVGKIAPQGEISVPLEYTVEWPTGKQIE 669
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BLAST of mRNA_Ecto-sp13_S_contig20144.6597.1 vs. uniprot
Match: D8LRM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM9_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.310e-8
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   73 VTGVIKSPSNHLAWVGKIAPHGGISAPLTYTVEWPFEKEI 192
            + G+ K P+NHLAWV K+AP   IS PL YTVEWP  KE+
Sbjct:  727 IAGITKGPTNHLAWVLKVAPQDDISIPLEYTVEWPIGKEV 766
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20144.6597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRN8_ECTSI8.630e-3085.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN7_ECTSI5.860e-2980.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN6_ECTSI7.280e-2980.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN5_ECTSI5.940e-1380.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRM9_ECTSI1.310e-860.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20144contigEcto-sp13_S_contig20144:2288..2890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score120.6
Seed ortholog evalue3e-25
Seed eggNOG ortholog2880.D8LRN8
Model size210
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
Exons2
EggNOG free text desc.Domain of unknown function (DUF4139)
EggNOG OGs28Q1A@1,2QWQ0@2759
Cds size210
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463012.915134-CDS-Ecto-sp13_S_contig20144:2287..23951681463012.915134-CDS-Ecto-sp13_S_contig20144:2287..2395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20144 2288..2395 +
1681463012.9318633-CDS-Ecto-sp13_S_contig20144:2788..28901681463012.9318633-CDS-Ecto-sp13_S_contig20144:2788..2890Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20144 2789..2890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20144.6597.1prot_Ecto-sp13_S_contig20144.6597.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20144 2288..2890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20144.6597.1

>prot_Ecto-sp13_S_contig20144.6597.1 ID=prot_Ecto-sp13_S_contig20144.6597.1|Name=mRNA_Ecto-sp13_S_contig20144.6597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MFGGGEGNSNNSTQSPRATPPGSLVTGVIKSPSNHLAWVGKIAPHGGISA
PLTYTVEWPFEKEIEMFFA*
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mRNA from alignment at Ecto-sp13_S_contig20144:2288..2890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20144.6597.1 ID=mRNA_Ecto-sp13_S_contig20144.6597.1|Name=mRNA_Ecto-sp13_S_contig20144.6597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20144:2288..2890+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGAGGTGGCGAGGGGAACAGTAATAACAGCACTCAAAGCCCGCG
GGCGACTCCGCCCGGAAGCCTGGTGACGGGGGTGATCAAGAGTCCATCGA
ATCACTTGGTGAGGTGACGTTTGATTACACCACGGGCTGTCACTCGACGG
TTCGCGATAAAGTAGCGAACCTGCTTCAGAGAAGACCGTAGCAACTGACA
GAGATGTTACCTTGACGCACACACCTGCGTGGTCGCACTAATCGAATGTA
GCAACATCTTCTAGACAAACCCAAACGCCCTGACTGTCTATGTGGCTATT
ATCACACGGCTTGATGACCTCTCCACCTTGCGTCCCGCTTCCTCGAAGGA
GATAATATTTTCATTTTTTGGATACTACCGTCCCCTCGTCTTGCGGCCAC
GCCCCCACCTGTACCTGCCTCCTACGTTTTGGTTGCCGTCAAAACCGTAT
GTCAAGAGTCACGCACGCCTTTGCCGTTCCGAAACAACTCCATTTTGCCA
GGCTTGGGTAGGGAAGATCGCTCCTCACGGCGGGATTTCGGCCCCCCTCA
CGTACACCGTGGAGTGGCCTTTCGAGAAGGAAATTGAGATGTTTTTCGCA
TAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20144:2288..2890+

>mRNA_Ecto-sp13_S_contig20144.6597.1 ID=mRNA_Ecto-sp13_S_contig20144.6597.1|Name=mRNA_Ecto-sp13_S_contig20144.6597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20144:2288..2890+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGAGGTGGCGAGGGGAACAGTAATAACAGCACTCAAAGCCCGCG
GGCGACTCCGCCCGGAAGCCTGGTGACGGGGGTGATCAAGAGTCCATCGA
ATCACTTGGCTTGGGTAGGGAAGATCGCTCCTCACGGCGGGATTTCGGCC
CCCCTCACGTACACCGTGGAGTGGCCTTTCGAGAAGGAAATTGAGATGTT
TTTCGCATAA
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