mRNA_Ecto-sp13_S_contig20141.6595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20141.6595.1
Unique NamemRNA_Ecto-sp13_S_contig20141.6595.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20141.6595.1 vs. uniprot
Match: D7FK27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK27_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 9.740e-48
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 QHGDSLIKKDPRDFFRVVVMNGDEFWHPVELAKALVLAAQHPEATCSVAEVDIYWANVRSLVVPANMHMVWLKDPHRCEWS 243
            QHGDSLIKKDPRDFFRVVVMNGDEFWHPVELAKALVLAA+HPEA CSVAEVDIYWA+VRSLVVPANMHMVWLKDPHRCEWS
Sbjct:  356 QHGDSLIKKDPRDFFRVVVMNGDEFWHPVELAKALVLAAKHPEARCSVAEVDIYWASVRSLVVPANMHMVWLKDPHRCEWS 436
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BLAST of mRNA_Ecto-sp13_S_contig20141.6595.1 vs. uniprot
Match: A0A6H5JEH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH3_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.880e-33
Identity = 71/106 (66.98%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    1 QHGDSLIKKDPRDFFRVVVMNGDEFWHPVELAKALVLAAQHPEATCSVAEVDIYWANVRSLVVPANMHMVWLKDPHRCEW-----------SEHRAITCDVDMSDE 285
            QHGDSLIKKDPR                     ALVLAAQHPEA+CSVAEVDIYWA+VRSLVVPANMHMVWLKDPHRCE            SEHRAITCDVDMSDE
Sbjct:  576 QHGDSLIKKDPR---------------------ALVLAAQHPEASCSVAEVDIYWASVRSLVVPANMHMVWLKDPHRCECNFNLAFLFRLRSEHRAITCDVDMSDE 660
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BLAST of mRNA_Ecto-sp13_S_contig20141.6595.1 vs. uniprot
Match: D7FK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK33_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.230e-27
Identity = 50/96 (52.08%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 QHGDSLIKKDPRDFFRVVVMNGDEFWHPVELAKALVLAAQHPEATCSVAEVDIYWANVRSLVVPAN-MHMVWLKDPHRCEWSEHRAITCDVDMSDE 285
            ++G+++IK+D R+F RVVV++ DEFWHPVELAKAL LAAQ  +A  + AE+D YWA+VRS+V P   +  +WL DP RC W+++R + CD+++ +E
Sbjct:  746 EYGNAIIKEDIRNFSRVVVLDTDEFWHPVELAKALALAAQQHKAVLAQAEMDTYWASVRSVVSPPEKLQALWLVDPRRCVWTQYREVICDIELGEE 841
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BLAST of mRNA_Ecto-sp13_S_contig20141.6595.1 vs. uniprot
Match: A0A6H5JRN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.160e-27
Identity = 50/96 (52.08%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 QHGDSLIKKDPRDFFRVVVMNGDEFWHPVELAKALVLAAQHPEATCSVAEVDIYWANVRSLVVPAN-MHMVWLKDPHRCEWSEHRAITCDVDMSDE 285
            ++G++LI++D R+F RVVV++ DEFWHPVEL+KALVLAAQ  +   + AE+D YWA+VRS+V P   +  +WL DP RC W +HR + CD+++ +E
Sbjct:  708 EYGNALIREDVRNFSRVVVIDTDEFWHPVELSKALVLAAQQYKVAFAQAEMDTYWASVRSVVSPPEKLQALWLVDPRRCVWHQHREVICDIELGEE 803
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BLAST of mRNA_Ecto-sp13_S_contig20141.6595.1 vs. uniprot
Match: A0A6H5JSA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.570e-22
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 QHGDSLIKKDPRDFFRVVVMNGDEFWHPVELAKALVLAAQHPEATCSVAEVDIYWANVRSLVVPANMH-MVWLKDPHRCEW----SEHRAITCDVDMS 279
            ++G+ LI++DPR FFRVVVM+ DEFWHP ELAKALV+ AQHP+   S   VD YWA+VRS+V P     +VWL DP+ C      S+H + + D+D S
Sbjct:  536 EYGNLLIREDPRHFFRVVVMDTDEFWHPAELAKALVVIAQHPKTMESRVLVDSYWASVRSVVFPPEERDVVWLVDPYHCVCTPVGSKH-SFSFDIDRS 632
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20141.6595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FK27_ECTSI9.740e-4896.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEH3_9PHAE1.880e-3366.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK33_ECTSI2.230e-2752.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRN8_9PHAE4.160e-2752.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSA5_9PHAE5.570e-2253.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20141contigEcto-sp13_S_contig20141:1272..3161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score114.8
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D7FK33
Model size287
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2EN0C@1,2SRIN@2759
Cds size285
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463012.8020177-CDS-Ecto-sp13_S_contig20141:1271..13061681463012.8020177-CDS-Ecto-sp13_S_contig20141:1271..1306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20141 1272..1306 +
1681463012.813619-CDS-Ecto-sp13_S_contig20141:1739..18021681463012.813619-CDS-Ecto-sp13_S_contig20141:1739..1802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20141 1740..1802 +
1681463012.8243563-CDS-Ecto-sp13_S_contig20141:2540..26811681463012.8243563-CDS-Ecto-sp13_S_contig20141:2540..2681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20141 2541..2681 +
1681463012.835885-CDS-Ecto-sp13_S_contig20141:3115..31611681463012.835885-CDS-Ecto-sp13_S_contig20141:3115..3161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20141 3116..3161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20141.6595.1prot_Ecto-sp13_S_contig20141.6595.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20141 1272..3161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20141.6595.1

>prot_Ecto-sp13_S_contig20141.6595.1 ID=prot_Ecto-sp13_S_contig20141.6595.1|Name=mRNA_Ecto-sp13_S_contig20141.6595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
QHGDSLIKKDPRDFFRVVVMNGDEFWHPVELAKALVLAAQHPEATCSVAE
VDIYWANVRSLVVPANMHMVWLKDPHRCEWSEHRAITCDVDMSDE
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mRNA from alignment at Ecto-sp13_S_contig20141:1272..3161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20141.6595.1 ID=mRNA_Ecto-sp13_S_contig20141.6595.1|Name=mRNA_Ecto-sp13_S_contig20141.6595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1890bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20141:1272..3161+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACGGGGATTCCCTCATCAAAAAAGACCCCAGGTGAGGGAAAAACCA
ACATCCTCTGCGGGGGCAATTTTGGTCCGGTTCCCCTGCCCCAAGGTGCA
GGGATCCGGTCGCGCTCCGCCCGGCTGTTTGTTTTCGTTTGGTGGAGGTC
TGATCGATCACACAAGCATCCTGCACGCCTGCTTGTCATTCCTCGAGTCT
GGTCTTGCCGAAATGCTTGAGCTACACCGCTCAAGCATTGTGTGAGTTCT
ACCCGATAGCCTTGCTTCAGTTCGCCGCTGCCATCTCTCTTCAAGAACAC
AAGCAATGCTAGGCTCGAATAGCAAGCTGTGACCAACATCCGAAATGTTT
GGTCTGGCGAACCCTCCCGTTCCGTGCGAAATGTCTGAGTTCTGCCTGTC
TGTGCTATCTTGCACCATTTTCCTTGAGGCGTGTTTGCCCTTTTTGTCGT
TTCCCCGGGCTCGAGCAGAGATTTCTTCCGGGTGGTTGTGATGAACGGGG
ACGAGTTCTGGCACCCTGTGGAACTTGCAAAGTGAGAAACGTTGGCAAGG
ATTGTCAACAGATATTAAGGCCCTTGTGTCTGACGCCGCAAGCAGTCTTG
TTGTGCAAACCACCGAAGCTGATATCACCCAAATAACTTCGACACACGCA
CTTAGGCTCCTTCCGTAGACGACGTCGTTGATGGCGTGCTGTGTTAGTTA
GTGTAAGGCCGTCCGAGGGCATTCTGGCGGTCTTCCTTGAGATCAGTCAA
AGAGACGGAGGGGCCAACGAGGGAGGGGGGACTCGAGGAGAGCCCGCACG
CCCATGCCGACACGTAGCATTTAAAAGAATCGCATACCCGCCAGTGGACC
TTCGACTGCATATCAGTTATCGTTTTAAGGGCAGTCTCTCACTGCTAGCG
TGTGTGCAGTCACTAATATCCCATGCTTCTTGTATACGTGCGATGGACGC
AGAACTTTGTGCATCATGTCGTCTGGACCAAAGGCAGTTGTCAATTGTAG
GAATGCGCAACGTGGCTCAGACCTTCGATTCACGTCGACGTCTTTTCTTG
CACGTGGGAACCATACCCACTTGATGCTCCCAGCATCCCCCTCTACTCGA
AGGTGGTAAGGTACGGATGAATCTGTATAGTTCACCAAACCGCTCAGTGT
CTTGTGGCCGAGTTTGTTTTCTCTGCTCACGTCGACAGTGAAGCGTGAAG
CACGAACATCAACCTTCCCCCGTCTCAGCTGGTCCTACCACCTGTTGCAC
GTGACGTTTGGTTTGCCAGGGCGCTAGTGTTGGCCGCGCAACATCCGGAA
GCAACGTGTTCGGTAGCAGAAGTTGACATCTACTGGGCCAATGTAAGGTC
GCTCGTGGTGCCGGCGAACATGCACATGGTGTGGCTCAAAGACCCGCATC
GTTGTGAATGGTGAGTATGGTGAGCGTTTTGGGGGATGTGCAAAGAAAAT
GCATCCACCTTTGCATAGGCCGTGCGAGAAGATCTCGAAGTCGAAGGTCA
CCCACGAAATTAATAACGTCTGAATCATTTTTGAGACTTGACCTCGGCTA
CAGGTCTGCTTCTCCATTGTTCGTTGCTAAGATCACATCGCCTTCGGATT
ACATCAACTTCCAGTAGCAAATAGTGGAAAGAGCATAGCATCCAAGGTTC
AACCAAGCAAACAATCGAGATCAAACTTGTTTTAGCCTCTCTATTCTTGA
CCGTATAGTTGTCATGCCGCTCACTCTCGCCGTATTGACGTGCATTTTGC
TCAAGCAACGACAAGCTCTATCTACTCGTTGCATTGACATGAAACGGATT
TCTTGCTGCAGCAAGTTTAACCCTTCCTTTCTAATTCGATGTAGGAGCGA
ACACCGAGCCATCACGTGCGACGTCGATATGAGCGACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20141:1272..3161+

>mRNA_Ecto-sp13_S_contig20141.6595.1 ID=mRNA_Ecto-sp13_S_contig20141.6595.1|Name=mRNA_Ecto-sp13_S_contig20141.6595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20141:1272..3161+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACGGGGATTCCCTCATCAAAAAAGACCCCAGAGATTTCTTCCGGGT
GGTTGTGATGAACGGGGACGAGTTCTGGCACCCTGTGGAACTTGCAAAGG
CGCTAGTGTTGGCCGCGCAACATCCGGAAGCAACGTGTTCGGTAGCAGAA
GTTGACATCTACTGGGCCAATGTAAGGTCGCTCGTGGTGCCGGCGAACAT
GCACATGGTGTGGCTCAAAGACCCGCATCGTTGTGAATGGAGCGAACACC
GAGCCATCACGTGCGACGTCGATATGAGCGACGAG
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