mRNA_Ecto-sp13_S_contig20140.6594.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20140.6594.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI) HSP 1 Score: 571 bits (1472), Expect = 2.510e-201 Identity = 286/328 (87.20%), Postives = 303/328 (92.38%), Query Frame = 1
Query: 1 SDRQPAASVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRNQKCNYWLCTSCFKAWTAASGVLGFLCCLHRGKQWCPCNSRKRVRRGPVPALKRSELAKSRIVSTSMFEFPARTPPTLTAASTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFSCSRKNCRSVKNPQASAAATGDTNSALPAPCCHAEVILEAERSSMPVPEADPLLSADEFRHALTIAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGNTTYFGIKDGLENNRKVVGGWAHVKYDDKDGSKMFQCKVGERFGFDLRWLDAGMVKVLL 984
S+RQ AA+VLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRN + NYWLC SCFK WT ASGV GFLCCLHRGKQWCPCNSRKRVRRGPVPAL+RS LAKSRI STS+FEFPART P LT A TTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEF CSRK+CR VKNPQ SAAATG T+SALPAPCCHAEV+L+AERSSMP+P ADPL SA+EFRHALT AVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLG+T YFGI DGL+NNRKVVGGWAHVKYDD+DGSK+FQCKVGERF DLRWL+ GMV+VLL
Sbjct: 200 SNRQLAAAVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRNPRWNYWLCKSCFKEWTEASGVDGFLCCLHRGKQWCPCNSRKRVRRGPVPALERSALAKSRIGSTSIFEFPARTRPALTVARTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFICSRKDCRRVKNPQTSAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCKVGERFALDLRWLNVGMVEVLL 527
BLAST of mRNA_Ecto-sp13_S_contig20140.6594.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE) HSP 1 Score: 328 bits (840), Expect = 1.350e-104 Identity = 178/283 (62.90%), Postives = 206/283 (72.79%), Query Frame = 1
Query: 34 MSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRNQKCNYWLCTSCFKAWTAASGVLGFLCCLHRGKQWCPCNSRKRVRRGPVPALKRSELAKSRIVSTSMFEFPARTPPTLTAASTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFSCSRKNCRSVKNPQASAAATGDTNSALPAPCCHAEVILEAERSSMPVPEADPLLSADEFRHALTIAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGNTTYFGIKDGLENNRKVVGGWAHVK 882
MSSSVSTGGRRKGQL E+A++CH CRT P QGIK AC D C YWLC C + WT SG GF CCLH G WCPC +R RVR GPV L RS AK+R V TS+FEFPA +PP +TAA+TT SATPT G G TYSVCTSV L RVAVIK G+++ CSR +C +ATG T+ LPA C HAEV+LEAE SS P+P+ADP+ SA+EFR ALT VP G F+E TTRAMH RADQAA++GVPVLVGLG+T YFGIKDG EN+R V+GG +K
Sbjct: 1 MSSSVSTGGRRKGQLTEEARTCHECRTKDPRQGIKNACGDSA---CCYWLCQKCLERWTEQSGRDGFQCCLHYGSLWCPCKNRTRVRTGPVAVLDRSTQAKTRHVRTSVFEFPAPSPPVVTAATTTLSATPTSGTGTTYSVCTSVSLNRVAVIKAGNKYMCSRNDC----------SATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTT-VPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIGGLYTIK 269
BLAST of mRNA_Ecto-sp13_S_contig20140.6594.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE) HSP 1 Score: 303 bits (775), Expect = 4.490e-95 Identity = 169/314 (53.82%), Postives = 212/314 (67.52%), Query Frame = 1
Query: 1 SDRQPAASVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRN----QKCNYWLCTSCFKAWTAASGV-LGFLCCLHRGKQWCPCNSRKRVRRGP-VPALKRSELAKSRIVSTSMFEFPARTPPTLTAASTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFSCSRKNCRSVKNPQASAAATGDTNSALPAPCCHAEVILEAERSSMPVPEADPLLSADEFRHALTIAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGNTTYFGIKDGLENNRKVVGGWAHVKYDDKDGSKMFQCKV 924
SD Q G S+S STGGRRKGQL +QA +CHGCR NKP +++AC G + CNYW+C C W ASG GF CCLH G++WCPC R +R V + RS LA++R ST ++EFP T + TAA+T S TP G G TYSVCTS RVAVIK GD F CSR +CR ++ S+AATGDT SALP+ C HAEV++EAER+SMP+P+AD LLSA +F+ AL VPAG F+ T +M ARADQAA++G+P+LV +GNT YF ++DG + NR V+G W HVKYD + GSK+FQCK
Sbjct: 226 SDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVCQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERVSTKRSKTVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNSQNRVAVIKAGDRFLCSRPDCRRIEG--LSSAATGDTASALPSRCAHAEVVIEAERTSMPMPKADALLSAGDFKSALD-KVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQR-GSKVFQCKA 534
BLAST of mRNA_Ecto-sp13_S_contig20140.6594.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 297 bits (760), Expect = 1.190e-91 Identity = 167/316 (52.85%), Postives = 212/316 (67.09%), Query Frame = 1
Query: 1 SDRQPAASVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVDGRN----QKCNYWLCTSCFKAWTAASGV-LGFLCCLHRGKQWCPCNSRKRVRRGP-VPALKRSELAKSRIVSTSMFEFPARTPPTLTAASTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFSCSRKNCRSVKNPQASAAATGDTNSALPAPCCHAEVILEAERSSMPVPEADPLLSADEFRHALTIAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGNTTYFGIKDGLENNRKVVGGWAHVKYDDKDGSKMFQCKVGE 930
SD Q G S+S STGGRRKGQL +QA +CHGCR NKP +++AC G + CNYW+ C W ASG GF CCLH G++WCPC R +R V + RS LA++R ST ++EFP T + TAA+T S TP G G TYSVCTS G RVAVIK G F CSR +CR ++ S+AATGDT SALP+ C HAEV++EAE++SMP+P+AD LLSA +F AL VPAG F++ T +M ARADQAA++G+P+LV +GNT YF ++DG + NR V+G W HVKYD + GSK+FQCK +
Sbjct: 142 SDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEARGCNYWVRQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERISTKRSKAVSVVDRSRLAQNRQESTDVYEFPTTTS-SPTAATTAASPTPPSGPGTTYSVCTSNGQNRVAVIKAGARFLCSRPDCRRIEG--LSSAATGDTASALPSRCAHAEVVIEAEKTSMPMPKADALLSAGDFESALD-KVPAGTFNQRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQR-GSKVFQCKASD 452
BLAST of mRNA_Ecto-sp13_S_contig20140.6594.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE) HSP 1 Score: 269 bits (687), Expect = 2.890e-80 Identity = 146/209 (69.86%), Postives = 163/209 (77.99%), Query Frame = 1
Query: 298 GPVPALKRSELAKSRIVSTSMFEFPARTPPTLTAASTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFSCSRKNCRSVKNPQASAAATGDTNSALPAPCCHAEVILEAERSSMPVPEADPLLSADEFRHALTIAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGNTTYFGIKDGLENNRKVVGGWAHVKYDDKDGSKMFQCKV 924
GPVP L RS AK+R V S+FEFPAR+PP +TAA+TT SATPT G G T+SVCTSV L RVAVIK G+++ CSR CR V N Q SAAA G T S LPA C HAEV+LEAERSS P+P+ADPL SA EFR ALT VP G F++ TTRAMH RADQAA+ GVPVLVGLG+T F IKDG ENNR V+G WAHVKYDDK GSKMFQCKV
Sbjct: 575 GPVPVLDRSTQAKTRHVRASVFEFPARSPPVVTAATTTLSATPTSGTGATHSVCTSVSLNRVAVIKAGNKYMCSRDECRRVGNVQTSAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTT-VPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 782
BLAST of mRNA_Ecto-sp13_S_contig20140.6594.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE) HSP 1 Score: 199 bits (506), Expect = 6.870e-59 Identity = 115/251 (45.82%), Postives = 159/251 (63.35%), Query Frame = 1
Query: 205 WTAASGVLG-FLCCLHRGKQWCPCNSRKR-VRRGPVPALKRSELAKSRIVSTSMFEFPARTPPTLTAASTTPSATPTGGAGKTYSVCTSVGLQRVAVIKTGDEFSCSRKNCRSVKNPQASAAATGDTNSALPAPCCHAEVILEAERSSMPVPEADPLL-SADEFRHALTIAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGNTTYFGIKDGLENNRKVVGGWAHVKYDDKDGSKMFQCKVGERFGFDL 948
W +S L F+CC+H K+ CPC RK+ R+GP L RS A++R V TS+FE P+ T T T A +TP+ PT G TYS CTSVG RV+V+++ + CSR C++++ A AAA GDT L C HA+V+++A+ SS+P+ A LL SA+EF AL AVP G F++ T +A+ AR +A E G+PVLV LG+T +F ++DG NR +VGGWAHVK ++ G +CKVG+R L
Sbjct: 4 WLRSSAQLSHFMCCVHFEKEPCPCGKRKKNARKGPTSLLDRSTQARTRNVGTSVFELPS-TQTTPTTADSTPTPAPTPREGTTYSTCTSVGQNRVSVVESNGRYMCSRPECKTIETLSAKAAAGGDTECVLRRHCAHADVVVQAKASSVPMAGATALLPSAEEFLRALD-AVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCKVGQRLSLIL 252
BLAST of mRNA_Ecto-sp13_S_contig20140.6594.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE) HSP 1 Score: 170 bits (431), Expect = 2.330e-49 Identity = 89/121 (73.55%), Postives = 97/121 (80.17%), Query Frame = 1
Query: 562 AATGDTNSALPAPCCHAEVILEAERSSMPVPEADPLLSADEFRHALTIAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGNTTYFGIKDGLENNRKVVGGWAHVKYDDKDGSKMFQCKV 924
AATG T S LPA C EV+LE ERSS P+P+ADPL SA EFR ALT VP G F+E TTRAMH RADQAA++GVPVLVGLG+T FGIKDG ENNR V+G WAHVKYDDK GSKMFQCKV
Sbjct: 10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTT-VPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 129
BLAST of mRNA_Ecto-sp13_S_contig20140.6594.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 108 bits (269), Expect = 6.300e-24 Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 643 MPVPEADPLLSADEFRHALTIAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGNTTYFGIKDGLENNRKVVGGWAHVKYDDKDGSKMFQCKV 924
MP+P+AD LLSA +F+ AL VPAG F+ T +M ARADQAA++G+P+LV +GNT YF ++DG + NR V+G W HVKYD + GSK+FQCK
Sbjct: 1 MPMPKADALLSAGDFKSALD-KVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQR-GSKVFQCKA 92 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20140.6594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20140.6594.1 >prot_Ecto-sp13_S_contig20140.6594.1 ID=prot_Ecto-sp13_S_contig20140.6594.1|Name=mRNA_Ecto-sp13_S_contig20140.6594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=332bp SDRQPAASVLGMSSSVSTGGRRKGQLREQAKSCHGCRTNKPGQGIKYACVback to top mRNA from alignment at Ecto-sp13_S_contig20140:1..1889+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20140.6594.1 ID=mRNA_Ecto-sp13_S_contig20140.6594.1|Name=mRNA_Ecto-sp13_S_contig20140.6594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1889bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20140:1..1889+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20140:1..1889+ >mRNA_Ecto-sp13_S_contig20140.6594.1 ID=mRNA_Ecto-sp13_S_contig20140.6594.1|Name=mRNA_Ecto-sp13_S_contig20140.6594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20140:1..1889+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |