mRNA_Ecto-sp13_S_contig20136.6592.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20136.6592.1
Unique NamemRNA_Ecto-sp13_S_contig20136.6592.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20136.6592.1 vs. uniprot
Match: D8LFC6_ECTSI (Homologue of the meiosis-specific protein HOP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC6_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 3.520e-5
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   82 MTGATNRSKNNDSKNMTNNQHAGNAQQPKASRTRSAQ-AQKELQAQ 216
            MTGA  RSK N+S NM   Q AGNAQQP+ASRTRSAQ AQKELQAQ
Sbjct:    1 MTGAKARSKTNNSTNMAIIQQAGNAQQPQASRTRSAQQAQKELQAQ 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20136.6592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFC6_ECTSI3.520e-576.09Homologue of the meiosis-specific protein HOP1 n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20136contigEcto-sp13_S_contig20136:1053..2093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size220
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463012.661637-CDS-Ecto-sp13_S_contig20136:1052..11171681463012.661637-CDS-Ecto-sp13_S_contig20136:1052..1117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20136 1053..1117 +
1681463012.6723056-CDS-Ecto-sp13_S_contig20136:1940..20911681463012.6723056-CDS-Ecto-sp13_S_contig20136:1940..2091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20136 1941..2091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20136.6592.1prot_Ecto-sp13_S_contig20136.6592.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20136 1053..2091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20136.6592.1

>prot_Ecto-sp13_S_contig20136.6592.1 ID=prot_Ecto-sp13_S_contig20136.6592.1|Name=mRNA_Ecto-sp13_S_contig20136.6592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
HRRHVHQSLWCGRKARHGASTSFRRFRMTGATNRSKNNDSKNMTNNQHAG
NAQQPKASRTRSAQAQKELQAQ
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mRNA from alignment at Ecto-sp13_S_contig20136:1053..2093+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20136.6592.1 ID=mRNA_Ecto-sp13_S_contig20136.6592.1|Name=mRNA_Ecto-sp13_S_contig20136.6592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20136:1053..2093+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCGTCGGCACGTACACCAAAGTCTTTGGTGCGGTCGAAAGGCAAGGCA
CGGTGCATCCACGAGGTAAGGTGAATCGTCTACGATCGCCACGAAACACG
GCTCGCTGTGCTTTTGCTCCTATCGTATGATTTCGAGGAACTTTCATCAC
AACTGTCGAGTGATATCAAGAGCGGACCGCCTCAGGCATCACTTTCAAAC
AGAGGAGGGCCCATTCTCGTGCCGCAGCGGATGGGTAGGACACTAGATCA
CTTGCATGTGCGGCCATCGCTTCAACGCCAAGCAAGTTTTATGGCATTGT
TTCTGTACCTGGTCAACAAATCTGGTGAAACATGTTCACCGCGTTTTCCG
TGCCGGGGAGCAGTGCTGCTACCAATGAGCACGCCGCCAAAGGCTGTGTT
GCCTAGCATTAATACTCCACCCGGGGTATGCCATGCCTGAGAAAAGGGGG
GCAAAGAGAATCTTCATGAAGAGAAACCACGTACATACGCTACGTTTGTG
TTGCGAGTTATAGGAGACGCCCCTAATAAATCTGTTCAGACGCTCGCGGT
CCTTCAGTACATATCATTACTGTAAGACTATAGAGTTGGCTGTAAACAAC
AACGGTGGGAGTTGCACCGAGTGATCAGGTCAGTTATTGATGCGAATATT
ATGAAGGAAATAACAATCTTTACTGCTGCACAACTGCTTCATTGAGAACG
GCGCCCCTCACATGCCTATAATCACACAGAGAGCATTATCGTTTTAGTCG
TAGGTTGTTCCTGCTACAAGACTCACTGACTTCATTCACTGTTCACTCTT
CCCTCTCGCATGCCCTGCTGTGTTGCACCACTTTATTGTCATAACATAAC
TTTTTACCACCTGCCTTAACCACCTTGTTCGCTCTAAGTTTCCGTCGGTT
CCGGATGACTGGCGCCACGAATAGGAGCAAGAACAACGATTCAAAAAACA
TGACAAACAACCAGCATGCGGGCAACGCCCAGCAGCCAAAGGCTTCCCGC
ACGAGATCAGCACAAGCCCAGAAGGAGCTACAAGCTCAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20136:1053..2093+

>mRNA_Ecto-sp13_S_contig20136.6592.1 ID=mRNA_Ecto-sp13_S_contig20136.6592.1|Name=mRNA_Ecto-sp13_S_contig20136.6592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20136:1053..2093+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCGTCGGCACGTACACCAAAGTCTTTGGTGCGGTCGAAAGGCAAGGCA
CGGTGCATCCACGAGTTTCCGTCGGTTCCGGATGACTGGCGCCACGAATA
GGAGCAAGAACAACGATTCAAAAAACATGACAAACAACCAGCATGCGGGC
AACGCCCAGCAGCCAAAGGCTTCCCGCACGAGATCAGCACAAGCCCAGAA
GGAGCTACAAGCTCAG
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