mRNA_Ecto-sp13_S_contig20134.6590.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20134.6590.1
Unique NamemRNA_Ecto-sp13_S_contig20134.6590.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20134.6590.1 vs. uniprot
Match: D7FLT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT7_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.840e-43
Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:    1 MRLHVILAALIGPSCVESFAVRCTAPSSSASPVSTSLRCRSTRTMMTLPTAGDLNRALGAVLVGGALMTGAVDITRADVSISPRC 255
            MRLHVILAAL+GPSCVESFAV CTAPSSS SPVSTSLRCRSTRTMMTLPTAGDLNRALGAVLVGGAL+TGA+D+ RADVSISPRC
Sbjct:    1 MRLHVILAALVGPSCVESFAVLCTAPSSSTSPVSTSLRCRSTRTMMTLPTAGDLNRALGAVLVGGALITGAMDVARADVSISPRC 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20134.6590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT7_ECTSI2.840e-4391.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20134contigEcto-sp13_S_contig20134:2898..3152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score150.6
Seed ortholog evalue3.3e-34
Seed eggNOG ortholog2880.D7FLT7
Model size255
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2CACH@1,2SH2H@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001300.1
Cds size255
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463012.587911-CDS-Ecto-sp13_S_contig20134:2897..31521681463012.587911-CDS-Ecto-sp13_S_contig20134:2897..3152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20134 2898..3152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20134.6590.1prot_Ecto-sp13_S_contig20134.6590.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20134 2898..3152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20134.6590.1

>prot_Ecto-sp13_S_contig20134.6590.1 ID=prot_Ecto-sp13_S_contig20134.6590.1|Name=mRNA_Ecto-sp13_S_contig20134.6590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MRLHVILAALIGPSCVESFAVRCTAPSSSASPVSTSLRCRSTRTMMTLPT
AGDLNRALGAVLVGGALMTGAVDITRADVSISPRC
back to top

mRNA from alignment at Ecto-sp13_S_contig20134:2898..3152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20134.6590.1 ID=mRNA_Ecto-sp13_S_contig20134.6590.1|Name=mRNA_Ecto-sp13_S_contig20134.6590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20134:2898..3152+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCTTCACGTCATTCTCGCTGCCCTGATAGGACCAAGCTGCGTGGA
GAGCTTTGCGGTGCGGTGCACTGCGCCGAGTAGCAGTGCATCTCCCGTTT
CGACCTCTCTGCGATGTCGAAGCACTCGGACGATGATGACGTTGCCCACA
GCTGGGGACTTGAATAGGGCATTGGGCGCAGTGCTGGTCGGCGGGGCTTT
GATGACGGGAGCAGTGGACATCACTAGGGCAGACGTGTCCATCAGCCCGA
GATGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20134:2898..3152+

>mRNA_Ecto-sp13_S_contig20134.6590.1 ID=mRNA_Ecto-sp13_S_contig20134.6590.1|Name=mRNA_Ecto-sp13_S_contig20134.6590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20134:2898..3152+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCTTCACGTCATTCTCGCTGCCCTGATAGGACCAAGCTGCGTGGA
GAGCTTTGCGGTGCGGTGCACTGCGCCGAGTAGCAGTGCATCTCCCGTTT
CGACCTCTCTGCGATGTCGAAGCACTCGGACGATGATGACGTTGCCCACA
GCTGGGGACTTGAATAGGGCATTGGGCGCAGTGCTGGTCGGCGGGGCTTT
GATGACGGGAGCAGTGGACATCACTAGGGCAGACGTGTCCATCAGCCCGA
GATGT
back to top