mRNA_Ecto-sp13_S_contig2013.6588.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2013.6588.1
Unique NamemRNA_Ecto-sp13_S_contig2013.6588.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2013.6588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2013contigEcto-sp13_S_contig2013:4323..6184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size412
Hectar predicted targeting categoryother localisation
Exons4
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463012.4725919-UTR-Ecto-sp13_S_contig2013:4322..43531681463012.4725919-UTR-Ecto-sp13_S_contig2013:4322..4353Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2013 4323..4353 -
1681463012.4815545-UTR-Ecto-sp13_S_contig2013:4368..44551681463012.4815545-UTR-Ecto-sp13_S_contig2013:4368..4455Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2013 4369..4455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463012.4903865-CDS-Ecto-sp13_S_contig2013:4455..45391681463012.4903865-CDS-Ecto-sp13_S_contig2013:4455..4539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2013 4456..4539 -
1681463012.5014489-CDS-Ecto-sp13_S_contig2013:4847..49571681463012.5014489-CDS-Ecto-sp13_S_contig2013:4847..4957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2013 4848..4957 -
1681463012.5096264-CDS-Ecto-sp13_S_contig2013:6084..61841681463012.5096264-CDS-Ecto-sp13_S_contig2013:6084..6184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2013 6085..6184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2013.6588.1prot_Ecto-sp13_S_contig2013.6588.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2013 4456..6184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2013.6588.1

>prot_Ecto-sp13_S_contig2013.6588.1 ID=prot_Ecto-sp13_S_contig2013.6588.1|Name=mRNA_Ecto-sp13_S_contig2013.6588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MNPNITPDDTHTATRLHHGLKNSHCYYSVARQTDVNSGNRKIDQLVRCIQ
RAVEEVVAARNGRLNRPRRQGGTGWTGGRRDGGKGGSDRGGTGGNGE*
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mRNA from alignment at Ecto-sp13_S_contig2013:4323..6184-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2013.6588.1 ID=mRNA_Ecto-sp13_S_contig2013.6588.1|Name=mRNA_Ecto-sp13_S_contig2013.6588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1862bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2013:4323..6184- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCCCAACATCACTCCGGACGACACACATACCGCCACCCGTCTCCA
CCATGGGCTCAAGAACAGCCACTGCTACTACAGTGTGGCAAGACAAACAG
GTGAGGCAGTTGGTACACACGTGCATACGTGCATTGGCACGAGTGAATGC
CAATATTGAGTGATCTGCCAGAAGCGTAGTACACGTGTGTGTTCGACTGC
TGTCCATCCGCATGGACAATTGGTGCTTCCCAACGGCACAGTGACTCTCG
TCGTTCATGCCGAGGGCTGTAGAAAGGGTTCTCGGCCGAGAGCGCACGGT
CCCCAAGGAGCCGCACGTCACGGTGGTGCTCAAACGTCCGGAGTCAAGAA
TGCAGATGCGGCCGAAACAACAGCGAGACGTGCTCGACGCCCAATGTTCG
CAAGAATGCGTTTGAAAGGGCGTGACGATCGTTTGTCAGCAGTAGACTAT
AGCACTGATCTGGTAGCTGTTGGCGAGAAGTTCGCCGAGGCCTACGCTGA
CGTCGCCAGCACTTCGGTGGAAACTCGTCACTTGGCGCGCTCCTCTATGA
ATCAGGAGCGCCAGATGTACACTGTTATTCCGTGGAAGCTCCTACAAGTA
ATACCATACTTTCTCACTCACTCACGTGGTCAAACGGGAGATATTTGGTG
ATCGTTGTCATCGTTCATCGACCCCAACATGTTCTACACGAGTCACTCAA
CCTTCCATGAGCAATGGCCTGCAAATGTATGCCATCACCCGGGCCCGCCT
TTCATTACGCCTGTCGCAGGCAGATCCGGGTGCCAGCGACCAACGACACC
CTGCGCTTCCCTGATGATCAAGAAGAACGACGGTCATCATCACGGCTCAC
ACAGACCAATCAGGCGAGGGAGATGATATTTATTCTGTCGTTGCGCATGA
GATCTTCATAGCAGGGGGACGAACACGCACAGAAAACCACACATCCCATA
GCACCGAGGCTCAAACCGCAGTGGGCCCGACTCCAACGGTGGCCCCACGC
TCAATCACGTAGTTCTTCGTATACAACGACGTGACACCACACACATGTAC
CGCTGGTGACGCCGCGAATGATCGCCTACAATATGTCTCACGTATGACAC
CACGCCCCCTAGTGAAGGCCAAACCGGTGTGATAACTTGCCATTTCCGAA
CACTGTAACATTTCCGATGAGACGTTCTTAAAATATGCGCCCCTCTCGAC
ATTATCCATTTTCTGTGGGGCGGGAAGACGTGAACTCGGGAAACCGAAAG
ATTGACCAGTTGGTAAGATGCATCCAACGCGCAGTCGAAGAAGTTGTGGC
TGCGCGCAACGGTAGGCTCAATAGACCCAGACGACAGGTGAGCGGTTGCG
TGCATCATCTTGGCTGGGGGGAGGGAGGGAGAGGGTTATCAAAATGGATG
CATGTGTGAACCCAAGAATGACAGGTGACAGGGTGGGCGAGAGACCCAGG
CGAGCCGCTACAAGCGCCGGATGGACATGAATTACCTCGTGGGAGCGGGG
AGGGGCGGCGGGGAGGGGTGTCCGGCCGGACCGAACGGAAGACAGGACGG
TAGGGGGGAGGATATGAGACCAGGGGGGAGGGAGGGGGGTAGGGCGTGAG
GGGGGAGAAACGACTGAGGCTGGCATGGCATGTACACGAACGCAGGGTGG
GACGGGTTGGACGGGTGGGAGGCGGGACGGGGGAAAGGGAGGGAGCGACA
GAGGCGGGACGGGGGGGAACGGAGAATGAGAACCAGGGAACGGGCGGGTG
GGAGAATGGATGGGGTGACGGGGGGGACGGGTGGGGGGGTCAGGGGCACG
GTGGTGAAGAATGCCAGTGATTGAGGCCTAGCTGCGAGCTGGAACGGAAG
GATGGCGCGCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2013:4323..6184-

>mRNA_Ecto-sp13_S_contig2013.6588.1 ID=mRNA_Ecto-sp13_S_contig2013.6588.1|Name=mRNA_Ecto-sp13_S_contig2013.6588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2013:4323..6184- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCCCAACATCACTCCGGACGACACACATACCGCCACCCGTCTCCA
CCATGGGCTCAAGAACAGCCACTGCTACTACAGTGTGGCAAGACAAACAG
ACGTGAACTCGGGAAACCGAAAGATTGACCAGTTGGTAAGATGCATCCAA
CGCGCAGTCGAAGAAGTTGTGGCTGCGCGCAACGGTAGGCTCAATAGACC
CAGACGACAGGGTGGGACGGGTTGGACGGGTGGGAGGCGGGACGGGGGAA
AGGGAGGGAGCGACAGAGGCGGGACGGGGGGGAACGGAGAATGA
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