mRNA_Ecto-sp13_S_contig20129.6587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20129.6587.1
Unique NamemRNA_Ecto-sp13_S_contig20129.6587.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20129.6587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20129contigEcto-sp13_S_contig20129:20..594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size575
Hectar predicted targeting categorysignal peptide
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463012.4252372-UTR-Ecto-sp13_S_contig20129:19..221681463012.4252372-UTR-Ecto-sp13_S_contig20129:19..22Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20129 20..22 +
1681463012.443833-UTR-Ecto-sp13_S_contig20129:370..5941681463012.443833-UTR-Ecto-sp13_S_contig20129:370..594Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20129 371..594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463012.4343843-CDS-Ecto-sp13_S_contig20129:22..3701681463012.4343843-CDS-Ecto-sp13_S_contig20129:22..370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20129 23..370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20129.6587.1prot_Ecto-sp13_S_contig20129.6587.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20129 23..370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20129.6587.1

>prot_Ecto-sp13_S_contig20129.6587.1 ID=prot_Ecto-sp13_S_contig20129.6587.1|Name=mRNA_Ecto-sp13_S_contig20129.6587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MWFTVQLCSILFFCVQCTNFTCVKVRNRSFDGGVGFDMIIFRRGCGMEAG
RRGGIQPNWNTIDTNCSQDFVLLECCRRYRLLCYSLSGGRRERGPHPASI
SGHQYMCVKCLMLVL*
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mRNA from alignment at Ecto-sp13_S_contig20129:20..594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20129.6587.1 ID=mRNA_Ecto-sp13_S_contig20129.6587.1|Name=mRNA_Ecto-sp13_S_contig20129.6587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20129:20..594+ (Ectocarpus species13 EcNAP12_S_4_19m)
TAGATGTGGTTCACGGTGCAGCTGTGCTCGATTCTGTTTTTTTGTGTCCA
GTGTACTAACTTCACGTGTGTAAAGGTGAGGAACCGCTCCTTTGATGGTG
GTGTTGGCTTTGATATGATAATTTTTCGCCGAGGCTGCGGTATGGAGGCG
GGGAGGCGGGGCGGTATCCAGCCAAATTGGAACACCATTGATACAAATTG
TAGTCAAGACTTCGTACTCCTTGAATGTTGCCGAAGATATCGATTGTTGT
GTTACAGCTTGTCTGGTGGAAGAAGGGAGAGGGGGCCGCATCCGGCATCT
ATTTCTGGTCACCAATACATGTGTGTCAAATGTCTCATGTTAGTGTTGTA
GGAAAATGTCGGCAGTGATGATGTAAACAGCCACCGAAGTGTGTGGACTC
GAGGGTAGTCCGTTGTTCTTATTTATCTGTTGGCCTTGTTTGTGCCTTTC
ATCGTTGTGGAGCGATGGGCGTGAGAACTCAGGGTACATGTTTCAGTATC
TTCCGCTATCTATGTACATACCTCGGTGTGTGAGGGGGTGGTGTCAGACA
ACATTTGAGGCAGCTCCGTGGTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20129:20..594+

>mRNA_Ecto-sp13_S_contig20129.6587.1 ID=mRNA_Ecto-sp13_S_contig20129.6587.1|Name=mRNA_Ecto-sp13_S_contig20129.6587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20129:20..594+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTCACGGTGCAGCTGTGCTCGATTCTGTTTTTTTGTGTCCAGTG
TACTAACTTCACGTGTGTAAAGGTGAGGAACCGCTCCTTTGATGGTGGTG
TTGGCTTTGATATGATAATTTTTCGCCGAGGCTGCGGTATGGAGGCGGGG
AGGCGGGGCGGTATCCAGCCAAATTGGAACACCATTGATACAAATTGTAG
TCAAGACTTCGTACTCCTTGAATGTTGCCGAAGATATCGATTGTTGTGTT
ACAGCTTGTCTGGTGGAAGAAGGGAGAGGGGGCCGCATCCGGCATCTATT
TCTGGTCACCAATACATGTGTGTCAAATGTCTCATGTTAGTGTTGTAG
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