mRNA_Ecto-sp13_S_contig20111.6581.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20111.6581.1
Unique NamemRNA_Ecto-sp13_S_contig20111.6581.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20111.6581.1 vs. uniprot
Match: A0A6H5L608_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L608_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 3.390e-41
Identity = 107/132 (81.06%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:    1 GEGNRRTARESPELSRVVAHNLVVMLSALHRAPPPDAAVDGGLEVAQXXXXXXXXXXXXXXXXXVSTAGGSDKGARLLATVSAGGRLAREQDLVFGLAEPLLDACMQVAARRASPQLLGTVVEAKAMLRRRL 396
            GEGNRRTARESPELSRVVAHNLVVMLSALHRAP              XXXXXXXXXXXXXXXXX        KG+RLLA VSAGGRLAREQDLVFGLAEPLLDACMQVAARRASPQLLGTVVE KAMLRRRL
Sbjct:  352 GEGNRRTARESPELSRVVAHNLVVMLSALHRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGSRLLAAVSAGGRLAREQDLVFGLAEPLLDACMQVAARRASPQLLGTVVETKAMLRRRL 483
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20111.6581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L608_9PHAE3.390e-4181.06J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20111contigEcto-sp13_S_contig20111:1127..1524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score173.3
Seed ortholog evalue7.4e-41
Seed eggNOG ortholog2880.D8LSY2
Model size398
KEGG koko:K09537,ko:K09540
KEGG TC3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,map03060,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0001655,GO:0001889,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0010259,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061008,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071944,GO:0072001,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098827
Exons1
EggNOG free text desc.posttranslational protein targeting to membrane, translocation
EggNOG OGsCOG5407@1,KOG0721@2759
Cds size396
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463012.0237503-CDS-Ecto-sp13_S_contig20111:1126..15221681463012.0237503-CDS-Ecto-sp13_S_contig20111:1126..1522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20111 1127..1522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20111.6581.1prot_Ecto-sp13_S_contig20111.6581.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20111 1127..1522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20111.6581.1

>prot_Ecto-sp13_S_contig20111.6581.1 ID=prot_Ecto-sp13_S_contig20111.6581.1|Name=mRNA_Ecto-sp13_S_contig20111.6581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
GEGNRRTARESPELSRVVAHNLVVMLSALHRAPPPDAAVDGGLEVAQGGG
QNGDDDDDEGSAGGVSTAGGSDKGARLLATVSAGGRLAREQDLVFGLAEP
LLDACMQVAARRASPQLLGTVVEAKAMLRRRL
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mRNA from alignment at Ecto-sp13_S_contig20111:1127..1524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20111.6581.1 ID=mRNA_Ecto-sp13_S_contig20111.6581.1|Name=mRNA_Ecto-sp13_S_contig20111.6581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20111:1127..1524+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGAAGGGAACCGCCGCACTGCTCGCGAGAGCCCGGAGCTCTCACGGGT
CGTGGCGCACAACCTCGTGGTGATGCTGAGCGCTCTCCACCGCGCCCCAC
CGCCCGACGCCGCCGTGGACGGGGGGCTTGAAGTAGCGCAAGGAGGCGGC
CAAAATGGAGATGATGATGATGATGAGGGGAGCGCTGGAGGGGTTTCGAC
CGCAGGAGGCAGTGACAAGGGTGCCCGGCTTCTGGCCACCGTCTCCGCGG
GCGGAAGGCTTGCCCGGGAGCAGGACCTAGTGTTCGGCCTCGCCGAGCCG
CTCCTGGACGCCTGCATGCAGGTCGCGGCGAGGCGGGCGTCGCCCCAGCT
GCTGGGCACCGTGGTGGAGGCGAAGGCGATGCTGAGGCGCCGGCTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20111:1127..1524+

>mRNA_Ecto-sp13_S_contig20111.6581.1 ID=mRNA_Ecto-sp13_S_contig20111.6581.1|Name=mRNA_Ecto-sp13_S_contig20111.6581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20111:1127..1524+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGAAGGGAACCGCCGCACTGCTCGCGAGAGCCCGGAGCTCTCACGGGT
CGTGGCGCACAACCTCGTGGTGATGCTGAGCGCTCTCCACCGCGCCCCAC
CGCCCGACGCCGCCGTGGACGGGGGGCTTGAAGTAGCGCAAGGAGGCGGC
CAAAATGGAGATGATGATGATGATGAGGGGAGCGCTGGAGGGGTTTCGAC
CGCAGGAGGCAGTGACAAGGGTGCCCGGCTTCTGGCCACCGTCTCCGCGG
GCGGAAGGCTTGCCCGGGAGCAGGACCTAGTGTTCGGCCTCGCCGAGCCG
CTCCTGGACGCCTGCATGCAGGTCGCGGCGAGGCGGGCGTCGCCCCAGCT
GCTGGGCACCGTGGTGGAGGCGAAGGCGATGCTGAGGCGCCGGCTG
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