mRNA_Ecto-sp13_S_contig2011.6578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: D8LEH5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH5_ECTSI) HSP 1 Score: 578 bits (1490), Expect = 3.290e-202 Identity = 309/326 (94.79%), Postives = 314/326 (96.32%), Query Frame = 1
Query: 1 MDVQGILRWLVDAKIPVAKAMPLVSALAAAGVRDSDGIASLGEDLLADTVVDKPSLKKIRAKIFGKGGKRSAGGSASAESGSTTSKRARPSVSGVDETLVAAAERAPEPPCSSLSDEQLAQVEIKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKLRDELVREGVGGGGGGACDGEGGDRQGQAGASLS 978
MDVQGILRWLVDAKIPV KAMPLVSALAAAGVRDSDGIASLGED LADTV DKPSL+KIRAKIFGKGGKRSAGGSAS ESGSTTSKRARPSVSG D+TL AAAERAPEPPCSSLSDEQLAQVEIK+NRSPVMVLWAAEVAQRL FDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGK+VPAKRVHTFLCKAYGVNLGPARASLRALAA IPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKLRDELVREGVGGG ACDG+GGDRQGQAGAS S
Sbjct: 1 MDVQGILRWLVDAKIPVGKAMPLVSALAAAGVRDSDGIASLGEDRLADTVTDKPSLRKIRAKIFGKGGKRSAGGSASNESGSTTSKRARPSVSGADKTLAAAAERAPEPPCSSLSDEQLAQVEIKINRSPVMVLWAAEVAQRLSFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKVVPAKRVHTFLCKAYGVNLGPARASLRALAAEIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKLRDELVREGVGGGXXXACDGDGGDRQGQAGASSS 326
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: A0A7Y5CDA7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CDA7_9BACT) HSP 1 Score: 119 bits (298), Expect = 1.670e-27 Identity = 68/171 (39.77%), Postives = 107/171 (62.57%), Query Frame = 1
Query: 370 IKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKLR 882
I +NR+PV+ LWAA VA+R+ ++W EA++LG+AVA A KG+HLG+ ++AE+AA ++ + VE+ G++ RRT+ G RA+S V ++ V ++ K++G NL A++R LA+A + ++ +A LYE FRPAV G GWGQ G + + +LR
Sbjct: 5 ITVNRAPVLTLWAAVVAERIGYEWDEALSLGKAVAGLTAQSKGQHLGIYAKSDDAEKAAKKKRLG-EHQFVELCGRNVPARRTKDGMRAMSGADEVDSESVQRYVIKSFGDNLEAVVAAMRKLASAHTKDDLQQ--KAFGLYEQFRPAVDYGVRGWGQKGKLDIDKIARLR 172
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: A0A7S0BLR5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLR5_9RHOD) HSP 1 Score: 124 bits (310), Expect = 1.870e-27 Identity = 100/297 (33.67%), Postives = 151/297 (50.84%), Query Frame = 1
Query: 4 DVQGILRWLV-DAKIPVAKAMPLVSALAAAGVRDSDGIASLGEDLLADTVVDKPSLKKIRAKIFGKGGKRSAGGSASAESGSTTSKRARPSVSGVDETLVAAAE-RAPEPPCSSLSDEQLAQVEIKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFT-LRRTEG---GWRAISK-GKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVL 873
DV +L LV KI V AM L+ +L ++GV+D + L + L V D KIR KI K+ AG + +A PS AAAE EP +L+ L +E+ +NRSP+M+LWA VA++ FDW+ ++L +A ADW A KKGE+ G+L+ + + +DL +E++G +R+TEG G+RA+ G+ + + T++ + +G NL A + R L+ AIP + + +YE FRP VA G AGWG G + +L
Sbjct: 6 DVPIVLSVLVKQCKIDVRAAMQLIPSLLSSGVKDESSLRGLSDSKLKKVVPDA----KIRRKILAGLKKKPAGAT-----------KASPSXXXXXXXXEAAAEAHIVEPEARTLTPADLKALEVVVNRSPLMILWACSVAKQRGFDWNSCLSLAQASADWYARKKGEYHGILQ--HKTPPTVDKSREDL--EEIELVGVRINAVRKTEGKEVGYRALDDDGREISPSKPWTYIRRNFGANLEHAYGACRDLSEAIPMEELVSGPTTYSVYEKFRPDVAYGAAGWGSRGRIKFDQLL 283
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: A0A3N5M0K4_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5M0K4_9CHLR) HSP 1 Score: 110 bits (275), Expect = 2.210e-24 Identity = 69/170 (40.59%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 370 IKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKL 879
IK+NR+PVM LWA VA+RL FD EA+TLG+ V A KG+ LG+ + EE A E D +EM+G+ TE G RA++K K V + V +L K + +LG R ++ LA A E + RA LYE FRP V GK GWG G + + L
Sbjct: 6 IKVNRAPVMTLWAVVVAERLGFDHDEALTLGKVVTGLNAQSKGQRLGIFDPGEEKREKAREHKPD-EVFWIEMLGRPVPAVNTEEGIRAVNKDKPVDPQSVERYLEKKFSDDLGDVRKAMEELARAFEP--AELAKRAYPLYEKFRPEVPEGKKGWGALGDLDIEAIRSL 172
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: UPI0019B02185 (Uncharacterized protein n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=UPI0019B02185) HSP 1 Score: 109 bits (272), Expect = 5.930e-24 Identity = 63/163 (38.65%), Postives = 99/163 (60.74%), Query Frame = 1
Query: 367 EIKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRT--VEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSG 849
+IK+NR+PV+ LWAA VA+RL ++ SEA+TLG+AVA A KG LG+ E ++ ++ ++ D+ P + +E++G+ +T G+RA KG+ + + V +L + +G +L AR ++ LA A P + +ET A LYE FRP + G GWG G
Sbjct: 5 KIKINRAPVLTLWAAVVAERLGYNQSEALTLGKAVAGLNAQSKGRRLGIYEEKKDEDKGK-DKKDEKPDKLEFIELLGRGIPAIKTAHGFRAAIKGEEIDPESVEKYLKQKFGEDLDEARGAMEKLAKAYPPKKLETE--AYSLYEKFRPKIPEGAKGWGAKG 164
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: A0A7C2K8T0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2K8T0_9CHLR) HSP 1 Score: 108 bits (269), Expect = 1.390e-23 Identity = 67/175 (38.29%), Postives = 99/175 (56.57%), Query Frame = 1
Query: 364 VEIKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADE--EAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKLR 882
+++ +NR+PV+ LWAA VA+R+ F A+TLGRA+A + A KG LG+ E+E AA ++ DL V++MG+ T G RA +G+ +RV +L +G +L ++RALA + P + +A LYE FRPAV RGK GWG +G+ +L LR
Sbjct: 1 MKVTINRAPVLTLWAAIVAERMGFPEEAALTLGRALAGYTAQSKGRMLGIYHERPPGESEHAAPDDAPDLVF--VDLMGKALPALATPDGVRAAERGRPADPERVRKYLRSKFGESLPEVERAMRALAGSYPADRLAE--QAYALYEKFRPAVERGKQGWGAAGVLDTERILALR 171
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: A0A0G4FH58_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FH58_VITBC) HSP 1 Score: 107 bits (268), Expect = 4.930e-22 Identity = 67/194 (34.54%), Postives = 109/194 (56.19%), Query Frame = 1
Query: 343 SDEQLAQVEIKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAIS-KGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKL---RDELVREGVGG 912
S + + V I +NRSPVMVLWA+ VA+R+ + W EA++LG A+A A KGE LG+ + ++ R A E + +E+MG+ +++T G R ++ KG + + + L + +G ++G A + LA A PQ + + LYE FRP + +G+ GWG G RL T++++ RD+ + GG
Sbjct: 123 SGKDVTDVVISVNRSPVMVLWASVVAERIGYSWEEALSLGNAIAAVYARAKGESLGIYQ--KQPSRQAPENY----SSVMELMGKVMPVQKTPQGLRGLNNKGIPIAPESTYNSLGEKFGTHIGDVYALMARLANAYPQGELSAGPLSYRLYERFRPDIPKGQEGWGAVGGLRLQTMVEMIKERDDATKAAQGG 310
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: A0A7C5Z8P6_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5Z8P6_9BACT) HSP 1 Score: 103 bits (257), Expect = 5.930e-22 Identity = 65/170 (38.24%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 370 IKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKL 879
IK+NR+PV+ LWAA VA+RL FDW EA+TLGRAVA A KG LGL E ER + ++++ + +T G RA+SK + + V +L + +G L AR ++ LA + P + + A LYE FRPA+ G GWG +G L + L
Sbjct: 5 IKINRAPVLTLWAAVVAERLGFDWDEALTLGRAVAGLNAYSKGVSLGLYRPTPEGERERRRKRAKGEIVQIDLLHRAVPAVQTPEGLRALSKDQPISPPSVERYLREKFGNRLEDARRAMERLARSWPPD--DLAAHAYNLYEKFRPAIPSGVRGWGAAGDLDLDRISSL 172
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: A0A1G0FTS1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RBG_16_66_13 TaxID=1798267 RepID=A0A1G0FTS1_9GAMM) HSP 1 Score: 103 bits (257), Expect = 6.600e-22 Identity = 65/171 (38.01%), Postives = 95/171 (55.56%), Query Frame = 1
Query: 367 EIKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKL 879
+IK+NR+PVM LWAA VA+RL +D +++LG+AVA A KG LG+ A E + + A V ++G+ R++ G RA KG V + V +L +G +L RA+++ALA + + RA LYE FRPAV +GK GWG +G L + +L
Sbjct: 5 KIKVNRAPVMTLWAAVVAERLGYDEDASLSLGKAVAGLNAQSKGRSLGIYAAKEGSSKEADRGQAKSEASLVMLLGRPVPTVRSKHGLRASIKGAEVESAPVRKYLESKFGEDLADVRAAMQALAQSYEPEALNE--RAFALYERFRPAVPKGKQGWGAAGELDLGVLREL 173
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Match: A0A0S8G6U6_9PROT (Uncharacterized protein n=2 Tax=unclassified Acidithiobacillales TaxID=1703362 RepID=A0A0S8G6U6_9PROT) HSP 1 Score: 103 bits (257), Expect = 7.140e-22 Identity = 68/174 (39.08%), Postives = 93/174 (53.45%), Query Frame = 1
Query: 358 AQVEIKMNRSPVMVLWAAEVAQRLLFDWSEAITLGRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAVARGKAGWGQSGMFRLATVLKL 879
A+ IK+NR+PV+ LWAA VA+RL F EA+TLGRAVA A KG LGL + + R + T TVE++ + TE G RA++KG + + V +L + LG R+++ A+A + E S A LY FRP V GK GWG +G LA + L
Sbjct: 7 ARRSIKVNRAPVLTLWAAVVAERLGFRRDEALTLGRAVAGLNAYSKGVSLGLFKPTPKEVRERRRKLRARETITVELLHRAVPAVHTEDGLRAVTKGAPINSDSVERYLEGKFADALGDVRSAMTAVARSYTP--AELSASAYTLYTKFRPEVPEGKKGWGAAGTLSLAKIRGL 178 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2011.6578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig2011.6578.1 >prot_Ecto-sp13_S_contig2011.6578.1 ID=prot_Ecto-sp13_S_contig2011.6578.1|Name=mRNA_Ecto-sp13_S_contig2011.6578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=329bp MDVQGILRWLVDAKIPVAKAMPLVSALAAAGVRDSDGIASLGEDLLADTVback to top mRNA from alignment at Ecto-sp13_S_contig2011:910..4460- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig2011.6578.1 ID=mRNA_Ecto-sp13_S_contig2011.6578.1|Name=mRNA_Ecto-sp13_S_contig2011.6578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2011:910..4460- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2011:910..4460- >mRNA_Ecto-sp13_S_contig2011.6578.1 ID=mRNA_Ecto-sp13_S_contig2011.6578.1|Name=mRNA_Ecto-sp13_S_contig2011.6578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2011:910..4460- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |