mRNA_Ecto-sp13_S_contig20104.6576.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20104.6576.1
Unique NamemRNA_Ecto-sp13_S_contig20104.6576.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20104.6576.1 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 1.680e-75
Identity = 170/190 (89.47%), Postives = 176/190 (92.63%), Query Frame = 1 
Query:    1 GATGTGTGVATSNGEPDKMTKEAEGLASTVSSDASXXXXXXXXXXXXXXXXXXXXXXXXXXXAKAAVAE-GSSGTVKLDRPKEVQGVFDDIQKKAVDFYKTSPG-MSKSQDAEGGAAATMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSRV 564
            GATGTG  ++   G+PDKMT+EAEGLAST SSDAS  XXXXXXXXXXXXXXXXXXXXXXXX AKAAVAE GSSGTVKLDRPKEVQGVFDD+QKKAVDFYKTS G MSKSQDAEGGA A MSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSR+
Sbjct:  153 GATGTGVSMS-KGGKPDKMTEEAEGLASTASSDASKAXXXXXXXXXXXXXXXXXXXXXXXXDAKAAVAEEGSSGTVKLDRPKEVQGVFDDVQKKAVDFYKTSSGAMSKSQDAEGGAVAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSRL 341
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BLAST of mRNA_Ecto-sp13_S_contig20104.6576.1 vs. uniprot
Match: D8LNG8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG8_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 4.210e-68
Identity = 160/182 (87.91%), Postives = 163/182 (89.56%), Query Frame = 1 
Query:   25 VATSNGEPDKMTKEAEGLASTVSSDASXXXXXXXXXXXXXXXXXXXXXXXXXXXAKAAVAE--GSSGTVKLDRPKEVQGVFDDIQKKAVDFYKTSPG-MSKSQDAEGGAAATMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSR 561
             A+  G+ DKMTKEAEGLASTVSSD S  XXXXXXXXXXXXXXXXXXXXXXXXX     AE  GSSGTVKLDRPKEVQGVFDDIQKKAV+FYKTS G MSKSQDAEGGAAA MSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLV AIKAMEESYPA ANPLADPALSGQWSVVYSSSSR
Sbjct:  130 AASKGGKLDKMTKEAEGLASTVSSDVSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEEGSSGTVKLDRPKEVQGVFDDIQKKAVEFYKTSSGAMSKSQDAEGGAAAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVAAIKAMEESYPADANPLADPALSGQWSVVYSSSSR 311
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20104.6576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0A8_9PHAE1.680e-7589.47PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
D8LNG8_ECTSI4.210e-6887.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20104contigEcto-sp13_S_contig20104:619..3179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size564
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003920.1
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463011.6389477-CDS-Ecto-sp13_S_contig20104:618..7921681463011.6389477-CDS-Ecto-sp13_S_contig20104:618..792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20104 619..792 -
1681463011.6487434-CDS-Ecto-sp13_S_contig20104:1397..15411681463011.6487434-CDS-Ecto-sp13_S_contig20104:1397..1541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20104 1398..1541 -
1681463011.6583557-CDS-Ecto-sp13_S_contig20104:2480..25971681463011.6583557-CDS-Ecto-sp13_S_contig20104:2480..2597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20104 2481..2597 -
1681463011.6674995-CDS-Ecto-sp13_S_contig20104:2894..29831681463011.6674995-CDS-Ecto-sp13_S_contig20104:2894..2983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20104 2895..2983 -
1681463011.6779132-CDS-Ecto-sp13_S_contig20104:3139..31791681463011.6779132-CDS-Ecto-sp13_S_contig20104:3139..3179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20104 3140..3179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20104.6576.1prot_Ecto-sp13_S_contig20104.6576.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20104 619..3179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20104.6576.1

>prot_Ecto-sp13_S_contig20104.6576.1 ID=prot_Ecto-sp13_S_contig20104.6576.1|Name=mRNA_Ecto-sp13_S_contig20104.6576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
GATGTGTGVATSNGEPDKMTKEAEGLASTVSSDASKAADAVSKSVSASAG
AAVETVGKAAGDAKAAVAEGSSGTVKLDRPKEVQGVFDDIQKKAVDFYKT
SPGMSKSQDAEGGAAATMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQ
LVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSRV
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mRNA from alignment at Ecto-sp13_S_contig20104:619..3179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20104.6576.1 ID=mRNA_Ecto-sp13_S_contig20104.6576.1|Name=mRNA_Ecto-sp13_S_contig20104.6576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20104:619..3179- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGACGGGGACGGGGACGGGGGTCGCGACGTCTAACGGTGAGTGGAA
AGGGCGAGAGAGAGAGGAGCAGGTAGCAGCAAGCGCGAGGTGTTTGGAGC
AACAGCTACTGTGACAGTGTAATGAGGCCGGCTGTCGTTGCCCGTTCTCT
GACGTGAGCCGGTCGGTGGTGTTGTCCTGATTGCGATTCCCGACAGGTGA
ACCCGACAAGATGACGAAGGAAGCGGAGGGATTGGCATCGACGGTGTCGT
CGGACGCCTCCAAGGCCGCCGATGCGGTATCCAAGGTGTGCGCGCACTCT
CGTTCTGCAACAGCGGCTATTAAAGAGAGAAGAGGAGGGGGGGATTCAGG
ATTGAACAAAATTAAGTAGGTAGGATTTGAAAGCTACAGTAGATGGGGTT
CACGCACTCGGTTGTGGGTCTATCAGAGGGGGGGAGGTTGGCTCTGTGTG
CCCCACTTCAGCAAGAGGTTCACCGCTGGTAGTCGGCCCAAGACAACAAA
TAATTGTAGAGGAGTGGACACGCAAGCCCAACCGTCCGTTCACCCGTTGT
CCTCGAACGCCTGTTTTTGTCATCGCAACCAGAGCGTGTCCGCTTCGGCC
GGGGCGGCGGTGGAGACGGTGGGCAAGGCCGCGGGTGATGCGAAGGCGGC
GGTGGCAGAAGGGTCTTCTGGAACGGTGAAGCTGGACAGGCCCAAGGAGG
TGAGGCAGGTAGTTGGCCTGCTCAGACAATCACCTGTCGCGGAGGAATAG
GGATTGTTCGGCGGGGAGAGGGGTTGGCTGGGTGTGGGATGATTCTGGTT
CCGTGTGTGCGATTGGTGGAGGGTTCGGAATAGGCGTCACAACGGACAAA
GCCTTTTAACACACCTGCTATGGAGGAGGGAAGGTATTGGCACTTCGACA
ACGGTGAAAGAACACTGACTGAACACGCCCATTGGACGAAAGTGCTGGGC
TAGGCACCCCAGCAAGTTTTCGATACCGTTTAGTTGAGTGTACGGGGCGT
CTTCTGTGGAAGGTAGAAGACTTCGTGGATGCTCTTGTTACGACGTTGGA
ACCCTCACATACATCTCTCCTCACTGTTTCCTTTTATTTTATTTTTTTCT
CTTCTTCTTTGTGTTCTTTTTTTTCCTCTCTTTCTCTGTGCCAGACGGCC
TTGTCTCTGCTTGCGTCGTGAAGTACCAAGATTGAACCAAGGGGGTGTAC
CTCTTTCTGTCTGGCTCGTGATGGTGATTCATAGTCCCAGTTGTTACCTC
GCATAGCGCGCAGAGGGAGTGGAGGACTCCAGAATATCTGTCGTTGATTT
TTATTGACTTGCGGACCCCTCGGGGCCAGTTTATTTGAGTGTACCTTTTA
AGGGTAAGTTAGCCTGCGACCACGGGAATTGAACGCTTCGAGTGTTGGAT
CAGTACGGACATACGAAGGTACTGGGTAGAAAGAGAACGAAACGGTTCTT
AATGTGAAGACAACAACAACAACAGCAATACATAGTGAGGGTTGGAGCAC
CTCTGTTCTCCTCTTGAATCTTTTCGTAGCTTGCTCGAACCTCGACGCCG
GGTGAGTCTTGGTGCCGACCCATCCATCGCCCTGATCGTAGGCATACCCA
AACCTCCCGTCGTCGTCGTTCTTTTTTTTTTTCCCCAGGTGCAAGGCGTA
TTCGACGACATTCAGAAGAAAGCCGTCGACTTCTACAAAACTAGTCCCGG
GATGTCTAAGTCGCAGGACGCAGAGGGTGGGGCGGCGGCCACGATGTCCG
AGGCGGCGAAGACTCTCGAGACCAAGCTTGAGGTGCGTGCCCGAGCCCCA
CCAACCCCTAACTGCTGCTGTCGAATGAACAAAAAGAGAAGCAAAAAGAG
CGTGGATTTTTTTGGGCTCGGTCCGTGTTACTTTCGTTTCTTGCGTCGTA
TGGCACTGCCTGGGCACGAGTTGGTTGGATTTGCACCATGTTTCAGAGCT
CATGGCCGTTTGTCGTGCGCGTTTTGTAGCAGGCAGTGTTTGCGACCACC
CCGCGAGTACGCATCCTGGCGGGGGTTAAAACGGCTCCTCAGGCCGCTAA
TATTTTTTGTGGCGCGTGAGACCGTACATCGACGATGGCCAAATATAGAA
ATCTGACCCTTTGGCCGGGGTAACATATATTTTTTTATACCTAGTTTTGA
TTTTTATTGTCGTCCGAGCACTGGTGAACAAAACCAGGAAATCAAGCTTG
AGCTCCGCCGGAATCCCAGGCAAGGGTTTAGTTTTTGGTCTTGTTTTCCA
TGCCGAGCTCGGAATTTATATTTATTTATATTTGATTTTGGCGCGGCTTC
TTTTCTTTGTATGGGCTGATGGGCGCATCCCCGCGACTCACTGCTGATGC
TCTTGTGCTGGTATTGCTGCTGGTGATTTGGTTGCAGTCGCTCCTCAGCG
AGAGCAATTTCAAGCCACGGAAGCTCAAGAAGGACAAGAAGTCTCAGCTG
GTGGACGCCATCAAGGCCATGGAGGAATCTTACCCCGCGGGCGCTAACCC
CCTAGCGGACCCCGCGCTGTCGGGGCAGTGGAGCGTGGTGTACTCGTCGA
GCTCGCGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20104:619..3179-

>mRNA_Ecto-sp13_S_contig20104.6576.1 ID=mRNA_Ecto-sp13_S_contig20104.6576.1|Name=mRNA_Ecto-sp13_S_contig20104.6576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20104:619..3179- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGACGGGGACGGGGACGGGGGTCGCGACGTCTAACGGTGAACCCGA
CAAGATGACGAAGGAAGCGGAGGGATTGGCATCGACGGTGTCGTCGGACG
CCTCCAAGGCCGCCGATGCGGTATCCAAGAGCGTGTCCGCTTCGGCCGGG
GCGGCGGTGGAGACGGTGGGCAAGGCCGCGGGTGATGCGAAGGCGGCGGT
GGCAGAAGGGTCTTCTGGAACGGTGAAGCTGGACAGGCCCAAGGAGGTGC
AAGGCGTATTCGACGACATTCAGAAGAAAGCCGTCGACTTCTACAAAACT
AGTCCCGGGATGTCTAAGTCGCAGGACGCAGAGGGTGGGGCGGCGGCCAC
GATGTCCGAGGCGGCGAAGACTCTCGAGACCAAGCTTGAGTCGCTCCTCA
GCGAGAGCAATTTCAAGCCACGGAAGCTCAAGAAGGACAAGAAGTCTCAG
CTGGTGGACGCCATCAAGGCCATGGAGGAATCTTACCCCGCGGGCGCTAA
CCCCCTAGCGGACCCCGCGCTGTCGGGGCAGTGGAGCGTGGTGTACTCGT
CGAGCTCGCGGGTG
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