mRNA_Ecto-sp13_S_contig2010.6574.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2010.6574.1
Unique NamemRNA_Ecto-sp13_S_contig2010.6574.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: D7FYA9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA9_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 4.120e-126
Identity = 308/399 (77.19%), Postives = 312/399 (78.20%), Query Frame = 1 
Query:   85 MCPRLGDAYARSEAVLDVRTDVVFSRLRKVIKYGLETLDASGGRLGFLPEEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELPAAVDMWTELRVFSISHNALTVLPPQANWRNLEDLNVRNNDLRMLPLEMRRXXXXXRLLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-MCEAFVNLQELYLYRXXXXXXXXXXXXXXXXXXXXXXXGNNIKAKPRPICLYTQAIPAEIGACSGLAELYINNNQKFSSVPTSISGLKMLRELSARRXXXXXXXXXXXXXXXXXXXXXVRSDKKQTCKMTPEFAAALKVRRCNIRGGVIKKGKGKKA 1278
            MCPRLGDAYARSEAVLDVR DVVFSRLRKV+KYGLETLDASGGRLGFLP+EIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELPAAVDMWT                                           XXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MCEAFVNLQELYLYR                        N I + P       +AIPAEIGACSGLAELYINNNQKFSSVPTSISGLKMLRELSARR  XXXXXXXXXXXXXXXXXXXVRSDKKQTCKMTPEFAAALKVRRCNIRGGVIKKGKGKKA
Sbjct:    1 MCPRLGDAYARSEAVLDVRADVVFSRLRKVVKYGLETLDASGGRLGFLPDEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELPAAVDMWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMCEAFVNLQELYLYR------------------------NKITSLP------PEAIPAEIGACSGLAELYINNNQKFSSVPTSISGLKMLRELSARRCKXXXXXXXXXXXXXXXXXXXVRSDKKQTCKMTPEFAAALKVRRCNIRGGVIKKGKGKKA 369
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: F0Y819_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y819_AURAN)

HSP 1 Score: 160 bits (405), Expect = 4.260e-41
Identity = 182/450 (40.44%), Postives = 222/450 (49.33%), Query Frame = 1 
Query:   43 VVTTRLIEAERLRCMCPRLGDAYARSEAVLDVRTDVVFSRLRKVIKYGLETLDASGGRLGFLPEEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELPAAVDMWTELRVFSISHNALTVL-------------------------PPQANWRNLEDLNVRNNDLRMLPLEMRRXXXXXRLLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMCEAFVNLQELYLYRXXXXXXXXXXXXXXXXXXXXXXXGNNIKAKPRPI------------CLYTQAIPAEIGACSGLAELYINNNQKFSSVPTSISGLKMLRELSARRXXXXXXXXXXXXXXXXXXXXXVRSDKKQTCKMTPEFAAALKVRRCNIRGGVIKKG--KGKK 1275
            VVTTR I  ER RCMCPRLGDA  RSE    +R + VF ++R+ +  G ETLD S   LGF+PEE+R  PE+  LT L+LSRNQLF SDHVF             L+DNFFNG LS    ++  LE+L LD NQ+TELP  V  W  ++ FS +                                P   +W   E L +  N++ +LP E+        L                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +      ++EL+LY+                        N + A P  I                        +C  L+ELYINN  KF+++P+S              XXXXXXXXXXXXXXXXXXXX +R+ KKQ CK+ PE  A L  + C IRGGV KKG  KGKK
Sbjct:   21 VVTTRTIIRERERCMCPRLGDAAVRSERADAIRLECVFFKIRRAVVQGKETLDLSRSNLGFVPEELRTVPELRKLTELDLSRNQLFGSDHVFSXXXXXXXXXXXXLSDNFFNGPLSERCTKMVALEDLALDGNQLTELPENVGDWKLMKRFSAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPAMRHWTECETLYLGTNEIAVLPDEVSFLTKLREL-----------------------DVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVLAHLTEVEELHLYK------------------------NKLDALPEQIGSXXXXXXXXXXXXXXXXXXXXXASCQSLSELYINNCGKFANLPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLRAAKKQVCKLPPELIATLDAQHCKIRGGVQKKGGKKGKK 423
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: A0A7S3YCW6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCW6_HETAK)

HSP 1 Score: 150 bits (378), Expect = 3.230e-37
Identity = 79/161 (49.07%), Postives = 103/161 (63.98%), Query Frame = 1 
Query:    1 GGKKKGKKTAPE------RIVVTTRLIEAERLRCMCPRLGDAYARSEAVLDVRTDVVFSRLRKVIKYGLETLDASGGRLGFLPEEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELPAA 465
            GGKKKGK            +  TT  I AER R MCPRLGD Y R +   +++ DVV  ++ K    G  TLD SGG LGFLP+E+R RPE+  +T +NL++NQLFNSDHVFG++  L+ ++ L+L+DNF NG LS + G    + ELRLD NQ+  LP A
Sbjct:    2 GGKKKGKGKKXXXXXELAEVPTTTPYIVAERERAMCPRLGDNYVRVQNSDEIKKDVVQWKIEKAAMNGASTLDISGGNLGFLPQELRTRPELQSITEINLAKNQLFNSDHVFGVVSALERIRVLNLSDNFLNGQLSDSVGLCISIRELRLDSNQLAALPPA 162
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: A0A7S1U9P1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9P1_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.560e-37
Identity = 84/177 (47.46%), Postives = 111/177 (62.71%), Query Frame = 1 
Query:    1 GGKKKGKKTAPERIVVTTRLIEAERLRCMCPRLGDAYARSEAVLDVRTDVVFSRLRKVIKYGLETLDASGGRLGFLPEEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELP-AAVDMWTELRVFSISHNALTVLP 528
            G K KGK  AP   ++TT  I   R  C+CPRLGD+    E   D R DV++ R+ K  + G   L+ S   L FLPE+I   PE+  + +L+LS N+LFNSDHVF IL  L  LKKL+L+ N  +G LS AA R+  LEELRLD N++T+LP   ++ W  L+VFS+SHN +  LP
Sbjct:    1 GKKGKGKAAAP---ILTTPAIIKARQTCLCPRLGDSLRNMEIADDCRMDVIYWRMNKAAERGHNALNLSHAALDFLPEDIIHIPELVGVVSLDLSYNRLFNSDHVFEILTHLPLLKKLNLSHNRLHGALSVAACRIETLEELRLDSNELTKLPETGIENWRSLKVFSVSHNRIKELP 174
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: A0A836C9T9_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T9_9STRA)

HSP 1 Score: 142 bits (359), Expect = 8.240e-35
Identity = 71/125 (56.80%), Postives = 90/125 (72.00%), Query Frame = 1 
Query:   85 MCPRLGDAYARSEAVLDVRTDVVFSRLRKVIKYGLETLDASGGRLGFLPEEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELP 459
            MCPRLGD Y   +A  +VR D +F RLR+ I    +TL  + G LG LP+EIR RPE+  L  L+LSRNQLFNS+ VFG+L  L+ L+KLDL+DNFFNGVLS AAG L +L+ + LD N I++LP
Sbjct:    1 MCPRLGDVYKNEQAADEVRADRMFFRLRRAIHESTDTLSLANGNLGSLPDEIRTRPELQNLKELDLSRNQLFNSNQVFGVLQSLEQLQKLDLSDNFFNGVLSPAAGLLTQLQNISLDNNHISQLP 125
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: A0A8J2SS54_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SS54_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.020e-32
Identity = 73/157 (46.50%), Postives = 100/157 (63.69%), Query Frame = 1 
Query:   10 KKGKKTAPERIVVTTRLIEAERLRCMCPRLGDAYARSEAVLDVRTDVVFSRLRKVIKYGLETLDASGGRLGFLPEEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELPAAVDMWT 480
            KKGK  A    +VTTR +  ER RCMCPRLGDA  R E   +++ + V +R++KV ++  + LD S   LGF+P+E+   P +  L  ++LSRNQLF+SDHVF  L  + +LK L+L  NF NG L+  A  +  LEEL LD NQ+T LP+ +  WT
Sbjct:    6 KKGKGGADADAIVTTRAMLVERERCMCPRLGDAIERRERANEIKRECVQARIKKVGEFKRDYLDMSASGLGFVPDEVPRSPSLTRLVRVDLSRNQLFSSDHVFQSLEHITSLKILNLAHNFLNGPLTGRATDVTSLEELYLDHNQLTALPSDIGNWT 162
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: A0A7S2S4U1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4U1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.240e-11
Identity = 65/190 (34.21%), Postives = 87/190 (45.79%), Query Frame = 1 
Query:    1 GGKKKGKKTAPERIVVTTRLIEAER---LRCMCPRLGDAYARSEAVLDVRTDVVFSRLRKVIKYGLETLDASGGRLGFLPEEIRERPEMAC---------LTNLNLSRNQLFNSDHVFGILLGLKN-LKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELP-AAVDMWTELRVFSISHNALTVLP 528
            GG  KG     + +V+ T   +A     ++  C  LG  Y+      ++R +V  SRLR V     E LD  G  LG +PEE+     +           LT L+LS+N L  +DHVF  L  L   L KL+++ N  +G L   A  L  LEEL    N I  L  AA   W+ LR   +S N L  LP
Sbjct:   24 GGHSKGSAAELDPVVIVTSAQQARERSHIQRECIPLGRRYSVLCRAQEIRREVAESRLRAVYSRSAECLDLRGLDLGHVPEELAALSRLEADIEPAGWNGLTALDLSKNSLNTTDHVFQALACLGGTLLKLNVSANELSGPLPDTARALTHLEELDASRNHIARLTDAAAAGWSRLRKLDLSRNELVGLP 213
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: A0A6A6WFB3_9PEZI (L domain-like protein n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6WFB3_9PEZI)

HSP 1 Score: 67.4 bits (163), Expect = 2.910e-8
Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 1 
Query:  184 GLETLDASGGRLGFLPEEIRERPEMACLTNLNLSRNQL-FNSDHVFGILLGLKNLKKLDLTDNFFNGVLSA-AAGRLRELEELRLDVNQITELPAAVDMWTELRVFSISHNALTVL 525
            G+E LD  G +LG +P  +R    M+ LT+LNLSRN+L   +  + G +L LK LK   + +N   G L   + GRL  L+ L L  NQ+TELPA +     L V +++ N LT L
Sbjct:  491 GVEFLDLHGNKLGSIPLGLRR---MSQLTSLNLSRNRLKIAAFEIIGQILSLKELK---VAENDLQGSLPTDSIGRLSNLQNLDLQGNQLTELPADMSELVNLHVLNVTSNRLTSL 600
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: F0YRJ7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRJ7_AURAN)

HSP 1 Score: 63.5 bits (153), Expect = 1.560e-7
Identity = 40/101 (39.60%), Postives = 50/101 (49.50%), Query Frame = 1 
Query:  196 LDASGGRLGFLPEEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELPAAVDMWTELRVFS 498
            LD S   LGF+PEE+R  PE+  LT L+LSRNQLF SDH                              ++  LE+L LD NQ+TELP  V  W  ++ FS
Sbjct:    1 LDLSRSNLGFVPEELRTVPELRKLTELDLSRNQLFGSDH---------------------------RCTKMVALEDLALDGNQLTELPENVGDWKLMKRFS 74
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BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Match: A0A1H0V0T0_9PSED (RING-type E3 ubiquitin transferase n=1 Tax=Pseudomonas reinekei TaxID=395598 RepID=A0A1H0V0T0_9PSED)

HSP 1 Score: 60.1 bits (144), Expect = 6.850e-6
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:  187 LETLDASGGRLGFLPEEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQITELPAAVDMWTELRVFSISHNALTVLPPQ 534
            L+TLD +G  L  +PE +R    M  L  L LS NQ+ +++ ++  L GL+ L+ LDL+   +N + +   G    LE L L  N +TE P AV     L   ++S N +T +P Q
Sbjct: 1727 LKTLDLNGNGLDAVPEPVRN---MVRLERLELSSNQIADTEQLYATLSGLERLRWLDLS---YNELDAFDVGAFEALETLDLRNNNLTEWPDAVFDSPHLGTLNLSGNDITSIPEQ 1836
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2010.6574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FYA9_ECTSI4.120e-12677.19Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
F0Y819_AURAN4.260e-4140.44Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3YCW6_HETAK3.230e-3749.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U9P1_9STRA5.560e-3747.46Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A836C9T9_9STRA8.240e-3556.80Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A8J2SS54_9STRA2.020e-3246.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2S4U1_9STRA1.240e-1134.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A6WFB3_9PEZI2.910e-840.52L domain-like protein n=1 Tax=Pseudovirgaria hyper... [more]
F0YRJ7_AURAN1.560e-739.60Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A1H0V0T0_9PSED6.850e-635.34RING-type E3 ubiquitin transferase n=1 Tax=Pseudom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2010contigEcto-sp13_S_contig2010:6345..12075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score379.4
Seed ortholog evalue2.2e-102
Seed eggNOG ortholog2880.D7FYA9
Model size1281
KEGG koko:K19613
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size1281
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2010.6574.1prot_Ecto-sp13_S_contig2010.6574.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2010 6345..12075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463011.47504-CDS-Ecto-sp13_S_contig2010:6344..65151681463011.47504-CDS-Ecto-sp13_S_contig2010:6344..6515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 6345..6515 +
1681463011.4870155-CDS-Ecto-sp13_S_contig2010:7199..73751681463011.4870155-CDS-Ecto-sp13_S_contig2010:7199..7375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 7200..7375 +
1681463011.5075402-CDS-Ecto-sp13_S_contig2010:7937..80341681463011.5075402-CDS-Ecto-sp13_S_contig2010:7937..8034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 7938..8034 +
1681463011.516553-CDS-Ecto-sp13_S_contig2010:8428..85221681463011.516553-CDS-Ecto-sp13_S_contig2010:8428..8522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 8429..8522 +
1681463011.52504-CDS-Ecto-sp13_S_contig2010:8862..89931681463011.52504-CDS-Ecto-sp13_S_contig2010:8862..8993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 8863..8993 +
1681463011.5338125-CDS-Ecto-sp13_S_contig2010:9837..100501681463011.5338125-CDS-Ecto-sp13_S_contig2010:9837..10050Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 9838..10050 +
1681463011.5441432-CDS-Ecto-sp13_S_contig2010:10273..103311681463011.5441432-CDS-Ecto-sp13_S_contig2010:10273..10331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 10274..10331 +
1681463011.5547154-CDS-Ecto-sp13_S_contig2010:10714..108091681463011.5547154-CDS-Ecto-sp13_S_contig2010:10714..10809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 10715..10809 +
1681463011.5649536-CDS-Ecto-sp13_S_contig2010:11461..115231681463011.5649536-CDS-Ecto-sp13_S_contig2010:11461..11523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 11462..11523 +
1681463011.5749798-CDS-Ecto-sp13_S_contig2010:11891..120751681463011.5749798-CDS-Ecto-sp13_S_contig2010:11891..12075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 11892..12075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2010.6574.1

>prot_Ecto-sp13_S_contig2010.6574.1 ID=prot_Ecto-sp13_S_contig2010.6574.1|Name=mRNA_Ecto-sp13_S_contig2010.6574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=427bp
GGKKKGKKTAPERIVVTTRLIEAERLRCMCPRLGDAYARSEAVLDVRTDV
VFSRLRKVIKYGLETLDASGGRLGFLPEEIRERPEMACLTNLNLSRNQLF
NSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQIT
ELPAAVDMWTELRVFSISHNALTVLPPQANWRNLEDLNVRNNDLRMLPLE
MRRWAKLRRLLAGGNGILEVPAEVGECSELEVLDLRGNALSELSPELARC
TSLALLHVGGNRISEFGPEMCEAFVNLQELYLYRNKITSLPPEVVGCMAR
LVKLSLSGNNIKAKPRPICLYTQAIPAEIGACSGLAELYINNNQKFSSVP
TSISGLKMLRELSARRCKALKSLPSELAKCENLKELDVRSDKKQTCKMTP
EFAAALKVRRCNIRGGVIKKGKGKKA*
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mRNA from alignment at Ecto-sp13_S_contig2010:6345..12075+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2010.6574.1 ID=mRNA_Ecto-sp13_S_contig2010.6574.1|Name=mRNA_Ecto-sp13_S_contig2010.6574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5731bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2010:6345..12075+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGAAAAAGAAGGGGAAGAAGACGGCCCCCGAGCGAATTGTGGTGAC
GACGCGGCTCATCGAGGCTGAGCGGCTGAGATGCATGTGCCCTCGTCTTG
GCGACGCCTACGCGCGGTCGGAAGCCGTGCTGGACGTGCGGACGGACGTT
GTTTTTAGTCGATTGAGAAAGGTGAGGTTACTGGCGGCGATGAACATTAC
TACCATTTTTTCATACAAGACATAATTGATGCGCTTCTGACCATCCGAGC
TGACCTGGCCTCAGTACTTTGAAGACGTAAATTTGCCTGCCGGGTGAACA
CACGTTCCCCCCGTTGACTAGCACCCGCAATGGAATGTGGCGAGAATTCA
CGTGGTACGTCGTGCGATGCAAAGAACTTTCCCGTGCCTTGTTGGTGAAG
TAGTACGTCGCCAACCACCGTCGTGCTATTTGTCCTGTGTGGCATCCCCT
TTCCGACGGCCTCCTGCCACCTGGTATTGCCTGCTGCAAAGCCCCCAGCA
GCCTCACTGCCGGCCCGAACCACTAGCGAATAGCCGAGGAATGGTTTCGA
AACGCGAGGTAAATACATCCATGATCTCATCTAAAGCGATGAGCAGGTGC
ATGTCTATGGTCTACAAAGTCGCATCAAGCAAGACTAAGCGCGCCAGCTA
CAGACCTTACCTTTGGCAAGAACAAAACCTACTTCGGTGCAAGAAGTCGT
CGAATATATCTTACACTGCACCAGCAACTGTAGGCCTGAAGGCCCCCTTT
CGGGAGGCAGGCTTCGCCTTTTGCCGAGGGCAGCTGACCGATAAACTGCC
TCTCGATAAAGCAGCAACAGCTTTTGCAAATAATTCAATTGGACTGCCAA
CCCAGGTGATAAAGTATGGCCTTGAGACATTGGATGCTTCGGGGGGAAGG
CTGGGCTTCCTGCCAGAGGAGATTCGAGAAAGGCCAGAGATGGCCTGCCT
CACAAATCTCAACCTCAGCCGGAATCAGCTGTTCAACAGTGATCACGTCT
TCGGCATACTGCTAGGCCTGAAGAACCTCAAGTGAGAAGAGAAGAAAGCA
CAGTGCTCGTGTGGTTTAGAATGTGTGCTCTGCTCGCATGGTGTTGCTAC
GACCACATTGTCATTGGTGGTGCCGCTGCCCTTATTGGTCCTGCTGTTGT
TTGTCGTCGTATATCTCGTCTTCACAACAACGCCATGTTGGCCTCTCCCG
AGCATCCTCGTCGACCACTCTTCAAAGTCGACCGCCACGAAGCTATCTTC
AGCAGCCACAGGGAACCTTGTCCCAGTAAACCTTGTGTGTGGAGTTTAAT
GTCTGGTCCAATCTGGTCGACAGTCAGTATACAAAGTCTTTGAATTGCAT
GGCTAGCTCCAGAAAGGGAACGATAACCACATGGCAGCTGCATACGCCCG
AAACTTTGAACTAGCTCTGTTTCAACAGCGAAACAGATCCGAGCGTTCCA
CGAAAACAGCTCAGGGGTGGATCCAACATACCTTCCCACCATGTACTTTG
ACGGCTGTCGACGACTGCTACAAAGCAAGATGCTGAGACTCTGTTCAAAC
CGCACGCTTATTGCTCACGGACGCCATATCTTTGCTTTTTCAGGAAGCTT
GACTTGACAGACAACTTCTTCAACGGGGTCTTATCGGCGGCGGCGGGAAG
GCTTCGCGAGCTAGAAGAGCTACGGCTCGACGTCAATCAGGTCCGGGAAC
ATATTTCACACAACAACGCACACACATACTGACATGTATGTAGGCTTTGT
TCTATTTCCCCGTCCCCCCCTTTGCCGTCAGTACCCTGGGATCTAACCAC
TAGCTCGAGTTGCAGTTGCAAGACCAGGAGTTGCAGGCTTACTAGGGTTA
GGGGTAGGGTTTGGGTTAGGTCCACTCCCAGACAACAGGTCGGCCAATCC
CTAGTAAAAGACGTTTTGACGGCAAGGGTGCCATTGCACGCAGATAATGA
GACCCCTGGTTCCAGTTCTCGCGCACGAAAATAACCCATGGCAGCCTACG
GTCATTTTCCTAGCAGGGGTGTTATTTTTCCTCGAAACAAACATGCGTTC
CGTTCACTGACATACGTTTCTTCTCTTGACCCAGATCACGGAGCTCCCGG
CTGCGGTTGACATGTGGACGGAGCTGCGTGTTTTCAGCATATCGCACAAC
GCTTTGACGGTTCTTCCGCCACAGGCAAGTGGGCGATATCGTTATCCAAC
CGCCGAGGATTCTCGGACCACGCCTAGTTCCCGATGGGTCACACGCGCAT
GGCTGTTTCGACCGACAAATGATAGACGTAGTCCGTGGTATCCGTACGTA
GGCAAGATTCCGCCGCGGTCGTTCTCCAGTGTAGACCCATAGCAGCCCAA
CGCCCATTCCTCTCCTGCTAGATGGAGGTGAGTCCCGTATATAATCCTAA
ATGCGAAGCGGTACGATAATAGTGAAACAGTAACAACACAGACATGAGAT
CAAGCTCTCGGCTACGTGAAAAACTCGATCCCCGAAAATTCCTCCGAACA
TATCACATCAGGTCGGAGACTGGAGAAACTTGGAAGACCTTAACGTGCGC
AACAACGACCTGCGAATGCTGCCCCTTGAGATGAGGAGGTGGGCCAAGCT
CAGACGGTTGCTTGCCGGTGGAAACGGCATCCTTGAGGTCCCAGCAGAGG
TACCTTGTCGCCGTTGCCGTTGGTGTTTTCGTTTTCAATGTTACCATGGT
TGTTTTGACCTTGCCCAGAGAATACATCCGAAGTTGACGCAGAAGAACGA
GAAATATAAACCATCGCGGTCCCCATGCTGATTATCGAAAAGGACAACAA
GGACACGCACCTGAAAAAGTAATCTGAAACCGGCCATACTACTCCACTGT
CGATAAAGCGGAGTGGGTGTGAGGGAAAAGGCCACGCGCTGTTGGTCCAA
TCCTTACTCAACATTTTGTGATTGCTCGTCTGCCCAACCGACGAAAGCCG
AGGCCCCTTTCACGCGGCCGCTCTTCGCGTGAGCTGCTACAGCTTTGACA
TGTGGTTTTCTCCACGGGATGGCTGGGAGGGTATGCATCACCTCCTTTTC
GCGTGAACTCGTTGACCGAATGCTACCTTATTTTACATTGTTTCTTTCAT
CCGAGAGGTTTCGGTATCGGTCCGTTGGCGGCAATAACCGTTGTCTTTGA
TAGTCCTACGACTCACGTACGACATGAAAGCACAGGAGCATCTACCGTAG
TAGCTTTCCCGCCGGCCAAGACACCACAGACCATGTTGAACATATCGAGC
ACGTTCGTTCATTCTGACGGGAACGGGAGATTGTGGAGATCCCAGCAAGC
GTGAGTTTAAACAAGACCGATCAAACCCACACACCAACTTCTGAAAGACA
ACCATCCATATGTCTCATGTCGGGACGCCCCCCCCTAGCACCAGAAATTT
CATGTGATCCGACCGAATTTGCACTTTGGCGACCTACAGCGAAACAACAA
GTAACCGCAACCTGACAACGTGGAGTATGCAGTATCTGTACAGGTGGGCG
AGTGTTCTGAGCTGGAAGTCCTAGACCTTAGAGGAAATGCCTTGTCCGAG
CTTTCCCCCGAGCTGGCTCGCTGCACGTCCCTGGCGCTGCTCCACGTCGG
AGGCAACAGAATCTCGGAGTTTGGGCCGGAGATGTGCGAGGCCTTCGTGA
ACCTGCAAGAGCTCTACCTTTATCGGAACAAGATCACCTCCTTACCGCCG
GAGGTAGTCTTGCCTTTGTTGCATTGCTGTGCGCAAACTTCGATTCTGAG
TTATTCTAAACCTTGATGTCGTTGTCGATGTTGTTGTGCGATAGCTGTGT
CTTGGTGTTGAGTAGTGGGCATGATACCCAAGTGGGCGTTTTCATGAAAT
ACGTTCTTCGCAACCTTGACCACCGGACCTTTAGCGTTCTCACACTGCTT
GCCGCTGCGTGTTTCACATGCGGCAAAAGGTGGGATGCATGGCGAGGTTG
GTGAAGCTATCGCTGAGCGGTAACAATATAAAGGCGAGTGAATGCTACTA
AAGAGAAGCCGATAAAGTATTGTCTGAGGCGCGGCATTGCTTGGGAGCCT
GAGAAATACATGTGGGGCGAAAAGGAGACCTGTCGCACAACGTTGGTCAT
TGTAAATAGACAATATGTCCTTGTTCCGGGGATCACGCAGCCCCATTGAG
AACCGGATTATAGTAGGGTAGTCTGGTGGTTTGGCGCACGTTCCCGTTGC
GTAGACTCTGGGGCTGCCACAAGAGGTTTCGACCTGTGAGGCAATCCACT
TACCTATCGGTCGATGAGGCACTTTGCCGACCGCGAAAGTAATGTTTCGT
GCACTACTGATGTGCAGCGTACGATGGCCGCAAGAGTTGACAAGTCGGAG
ATCTTCGTGTAGCCGCTAAGAACCTCGTCCCATATGCTTGTACACGCAGG
CGATCCCGGCGGAGATCGGTGCCTGCAGTGGGTTGGCGGAGCTGTACATC
AACAACAACCAGAAGGTGAACATGAGCCACACGTCAAAGAAAAAATCAGG
AAATATCCGTATCCTTGCCGGAGCGCCCCTTGCGGAAACTTCACGCCCAA
CTCCCGAACGTGCGAGGACGTACCTGGAAGGGTGTAGCCGAACGCCAATC
GCGTGCGGTGTCTCCGGAGAGTTTCGTGGCGTGGGAAGAAACTGTCTGCC
TGCCAGAAGACTTGGGCAGCACCTGCATGTAACAAAGCCTTGGGTGCCTC
GGGTAGCCGCGGTCTTCGGGATTCGGGACGTCCATTGAAACCGTCGATGG
AAGCCGGAGTTGCTCGAAACAAGAACGAAATCCCATCGCAATGGGTCGCA
GAGCGGGAGTGAGCTGCGTCTGTCGTATGTATCCCTCTTTGGGGAGAACG
GCACAAAACTCAGGTTTTGCCGTGTGAGAAAAGGGTTAATGTTCGATATC
GAATTCATCTTCTCGTATTCTGACGACGCGGCCAAACAGCCCACGATATG
TTACAACATATTCAGATGCACATCCTAGCTTGTTGCGTGGGGTTGCCAAC
ATCCTCTGGCGTTGTCTGGATTTGAAGTCACCTCTTTCTCCGCATTATTT
CTCTCTGTACCGCGGTTCCCCTCTGCCCCGGCTCGCCGGCTTTCGGACGA
TGTCCTGATTGCCGCAGTTCTCGTCAGTGCCGACGTCGATAAGCGGTTTG
AAGATGCTGAGGGAGTTGTCGGCAAGACGGTGAGAGAAAGCACAAGATAG
ATGATATGTGTGGGGGGTGGTGTGTTCGTGGCGGCAAAACTGTCGTCGTG
TAAACTCTCTTGATTGCTGCCCGTTTTCGGGTTATCTATTCCCTTATCGT
CGAGAATGGACTACCTCTCTCCGTACATAGCCGGTGCAGCGTAGGCATGC
GAGTCCGTGGCGCCCGAGTGGCCGAAGTACAACACCAACTTCTATCCCTC
AAGTGTCTTAGTGCGTTATTGCTGTTCAGGCACATTTTGCCCGTCTCCCA
GGTGGACAGACCTACTCAGCGTTGAATGAGACAGCGGGAAACAACCATAA
GGGCAATTGCTGCCGTGCTCCTCCATTGGTCTTGCAATATGTCTCAGATG
CAAGGCACTCAAGTCGTTGCCGTCGGAGCTCGCCAAATGCGAGAACCTCA
AGGAGCTGGATGTGAGGTCGGACAAGAAGCAAACGTGCAAGATGACCCCA
GAGTTTGCGGCTGCACTGAAAGTGCGCCGCTGCAACATCAGAGGGGGGGT
CATCAAGAAGGGGAAGGGCAAAAAGGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2010:6345..12075+

>mRNA_Ecto-sp13_S_contig2010.6574.1 ID=mRNA_Ecto-sp13_S_contig2010.6574.1|Name=mRNA_Ecto-sp13_S_contig2010.6574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1281bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2010:6345..12075+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGAAAAAGAAGGGGAAGAAGACGGCCCCCGAGCGAATTGTGGTGAC
GACGCGGCTCATCGAGGCTGAGCGGCTGAGATGCATGTGCCCTCGTCTTG
GCGACGCCTACGCGCGGTCGGAAGCCGTGCTGGACGTGCGGACGGACGTT
GTTTTTAGTCGATTGAGAAAGGTGATAAAGTATGGCCTTGAGACATTGGA
TGCTTCGGGGGGAAGGCTGGGCTTCCTGCCAGAGGAGATTCGAGAAAGGC
CAGAGATGGCCTGCCTCACAAATCTCAACCTCAGCCGGAATCAGCTGTTC
AACAGTGATCACGTCTTCGGCATACTGCTAGGCCTGAAGAACCTCAAGAA
GCTTGACTTGACAGACAACTTCTTCAACGGGGTCTTATCGGCGGCGGCGG
GAAGGCTTCGCGAGCTAGAAGAGCTACGGCTCGACGTCAATCAGATCACG
GAGCTCCCGGCTGCGGTTGACATGTGGACGGAGCTGCGTGTTTTCAGCAT
ATCGCACAACGCTTTGACGGTTCTTCCGCCACAGGCAAACTGGAGAAACT
TGGAAGACCTTAACGTGCGCAACAACGACCTGCGAATGCTGCCCCTTGAG
ATGAGGAGGTGGGCCAAGCTCAGACGGTTGCTTGCCGGTGGAAACGGCAT
CCTTGAGGTCCCAGCAGAGGTGGGCGAGTGTTCTGAGCTGGAAGTCCTAG
ACCTTAGAGGAAATGCCTTGTCCGAGCTTTCCCCCGAGCTGGCTCGCTGC
ACGTCCCTGGCGCTGCTCCACGTCGGAGGCAACAGAATCTCGGAGTTTGG
GCCGGAGATGTGCGAGGCCTTCGTGAACCTGCAAGAGCTCTACCTTTATC
GGAACAAGATCACCTCCTTACCGCCGGAGGTAGTGGGATGCATGGCGAGG
TTGGTGAAGCTATCGCTGAGCGGTAACAATATAAAGGCGAAACCTCGTCC
CATATGCTTGTACACGCAGGCGATCCCGGCGGAGATCGGTGCCTGCAGTG
GGTTGGCGGAGCTGTACATCAACAACAACCAGAAGTTCTCGTCAGTGCCG
ACGTCGATAAGCGGTTTGAAGATGCTGAGGGAGTTGTCGGCAAGACGATG
CAAGGCACTCAAGTCGTTGCCGTCGGAGCTCGCCAAATGCGAGAACCTCA
AGGAGCTGGATGTGAGGTCGGACAAGAAGCAAACGTGCAAGATGACCCCA
GAGTTTGCGGCTGCACTGAAAGTGCGCCGCTGCAACATCAGAGGGGGGGT
CATCAAGAAGGGGAAGGGCAAAAAGGCGTAA
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