mRNA_Ecto-sp13_S_contig2010.6573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2010.6573.1
Unique NamemRNA_Ecto-sp13_S_contig2010.6573.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2010.6573.1 vs. uniprot
Match: D7FYB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB0_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.030e-53
Identity = 105/115 (91.30%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:   43 MLAQSPSATPPVADDAVGVDTSGGVRFVAVPGSGLEETFPRPGVKTVGSTALPASASPSTLSPPLASNFVGVQDGGVARATTAAASTQATELKMSDWVNARRRRARTASSNTNGR 387
            MLAQ PSATPPV DDAVGVDTSGGVRFVAVPGSGLEETFPRP VKTVG TALPASASPSTLSPPL SNF GV+DGGVARAT+AAASTQA ELKMSDWVNARRRRARTASSNT GR
Sbjct:    1 MLAQRPSATPPVPDDAVGVDTSGGVRFVAVPGSGLEETFPRPSVKTVGGTALPASASPSTLSPPLVSNFGGVEDGGVARATSAAASTQAPELKMSDWVNARRRRARTASSNTIGR 115
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BLAST of mRNA_Ecto-sp13_S_contig2010.6573.1 vs. uniprot
Match: A0A6H5L679_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L679_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.180e-27
Identity = 68/102 (66.67%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   43 MLAQSPSATPPVADDAVGVDTSGGVRFVAVPGSGLEETFPRPGVKTVGSTALPASASPSTLSPPLASNFVGVQDGGVARATTAAASTQATELKMSDWVNARR 348
            MLAQSPSATPPV DDAVGVDT+GGVRFVAVPGSGLEETFPRPGVKTVG TALPASAS                              QA ELKMSDWVNARR
Sbjct:    1 MLAQSPSATPPVPDDAVGVDTAGGVRFVAVPGSGLEETFPRPGVKTVGGTALPASASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPELKMSDWVNARR 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2010.6573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYB0_ECTSI1.030e-5391.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L679_9PHAE2.180e-2766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2010contigEcto-sp13_S_contig2010:3834..4581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size390
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463011.430814-CDS-Ecto-sp13_S_contig2010:3833..38731681463011.430814-CDS-Ecto-sp13_S_contig2010:3833..3873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 3834..3873 -
1681463011.444959-CDS-Ecto-sp13_S_contig2010:4231..45811681463011.444959-CDS-Ecto-sp13_S_contig2010:4231..4581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 4232..4581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2010.6573.1prot_Ecto-sp13_S_contig2010.6573.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2010 3834..4581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2010.6573.1

>prot_Ecto-sp13_S_contig2010.6573.1 ID=prot_Ecto-sp13_S_contig2010.6573.1|Name=mRNA_Ecto-sp13_S_contig2010.6573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
RAVALFREESSAGAMLAQSPSATPPVADDAVGVDTSGGVRFVAVPGSGLE
ETFPRPGVKTVGSTALPASASPSTLSPPLASNFVGVQDGGVARATTAAAS
TQATELKMSDWVNARRRRARTASSNTNGRN
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mRNA from alignment at Ecto-sp13_S_contig2010:3834..4581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2010.6573.1 ID=mRNA_Ecto-sp13_S_contig2010.6573.1|Name=mRNA_Ecto-sp13_S_contig2010.6573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=748bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2010:3834..4581- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCCGTTGCTCTATTTAGAGAAGAGTCTTCAGCAGGAGCAATGCTTGC
TCAGAGTCCATCAGCGACGCCACCCGTTGCTGATGACGCTGTTGGTGTTG
ACACCTCGGGTGGCGTGCGCTTCGTCGCCGTTCCTGGCAGCGGTCTGGAA
GAGACCTTTCCCCGCCCCGGCGTCAAAACTGTGGGTAGCACAGCATTGCC
TGCCTCTGCGAGCCCAAGCACTCTGTCACCTCCTCTGGCCAGCAATTTTG
TTGGAGTGCAAGATGGGGGTGTTGCGAGGGCGACGACTGCAGCTGCTTCC
ACTCAAGCCACAGAGCTGAAGATGTCCGACTGGGTCAACGCAAGGAGAAG
GTGCGGCAGTGCAGGACATTGCATAACATCTTCCCCGTATTTAGGCTACT
GGTACAATACACGTCAACCGTTGCCGAATAATAGGTATTATCCCTGTGTA
GTGTGTTGTCTACCCTGGTGCACCACAAAGTCCCACAACGTATCCAGAGC
AGGTAAGCAACGAGGGATTCTTGTACAGCAGTAACTTCTCGAGGGAAGTC
AACACAGCTTGAACCATATCGGTGACTCCTTCTCCCAATGCAACACGAGC
TGTGTGGTCGTCAAACCCCTGCGTAAAGATGTGTGCTTGCACAAACAGCA
GCAAACAATGATACATGGCGCCTTACCAATGGAACACTGCTGTGAACGTC
CACCGTAGGCGTGCGAGGACGGCGTCGTCCAACACCAACGGGCGCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2010:3834..4581-

>mRNA_Ecto-sp13_S_contig2010.6573.1 ID=mRNA_Ecto-sp13_S_contig2010.6573.1|Name=mRNA_Ecto-sp13_S_contig2010.6573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2010:3834..4581- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGCCGTTGCTCTATTTAGAGAAGAGTCTTCAGCAGGAGCAATGCTTGC
TCAGAGTCCATCAGCGACGCCACCCGTTGCTGATGACGCTGTTGGTGTTG
ACACCTCGGGTGGCGTGCGCTTCGTCGCCGTTCCTGGCAGCGGTCTGGAA
GAGACCTTTCCCCGCCCCGGCGTCAAAACTGTGGGTAGCACAGCATTGCC
TGCCTCTGCGAGCCCAAGCACTCTGTCACCTCCTCTGGCCAGCAATTTTG
TTGGAGTGCAAGATGGGGGTGTTGCGAGGGCGACGACTGCAGCTGCTTCC
ACTCAAGCCACAGAGCTGAAGATGTCCGACTGGGTCAACGCAAGGAGAAG
GCGTGCGAGGACGGCGTCGTCCAACACCAACGGGCGCAAC
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