mRNA_Ecto-sp13_S_contig2010.6572.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2010.6572.1
Unique NamemRNA_Ecto-sp13_S_contig2010.6572.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig2010.6572.1 vs. uniprot
Match: D7FYB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB0_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.010e-75
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 1 
Query:    1 GKEAGSTAQNVPSAESVIKAKKVERIKIMQEKQLQEAAKTNEEAQGVINQLKVSLRQLEHRFKQTESMNTIVTTNRRKDNMKWNALVLEYEMKINYLERALAQEESKLRIAEQVHREEGLELHLELVSKQRGSTRAGTKTAAMQEEMAA 447
            GKEAGSTA NVPSAESVIKAKKVERIKIMQEKQLQEAAKTNEEAQ VINQLKVSLRQLE RFKQTESMNTIVTTNRRKDNMKWNALVLEYEMKINYLERALAQEESKLRIAEQVHREEGLELHLELVSKQRGSTRAGTKTAAMQEEMAA
Sbjct:  386 GKEAGSTAGNVPSAESVIKAKKVERIKIMQEKQLQEAAKTNEEAQEVINQLKVSLRQLEQRFKQTESMNTIVTTNRRKDNMKWNALVLEYEMKINYLERALAQEESKLRIAEQVHREEGLELHLELVSKQRGSTRAGTKTAAMQEEMAA 534
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BLAST of mRNA_Ecto-sp13_S_contig2010.6572.1 vs. uniprot
Match: A0A6H5L679_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L679_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 4.270e-35
Identity = 86/109 (78.90%), Postives = 88/109 (80.73%), Query Frame = 1 
Query:   16 STAQNVPSAESVIKAKKVERIKIMQEKQLQEAAKTNEEAQGVINQLKVSLRQLEHRFKQTESMNTIVTTNRRKDNMKWNALVLEYEMKINYLERALAQEESKLRIAEQV 342
            S A NV SAESVIKA+KV+RIKIMQE     AAKTNEEAQGVINQLK            TESMNTIVTTN RKDNMKWNALVLEYEMKINYLERALAQEESKLRIAEQV
Sbjct:  435 SIAGNVQSAESVIKAQKVQRIKIMQE-----AAKTNEEAQGVINQLK------------TESMNTIVTTNLRKDNMKWNALVLEYEMKINYLERALAQEESKLRIAEQV 526
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BLAST of mRNA_Ecto-sp13_S_contig2010.6572.1 vs. uniprot
Match: A0A6H5KQR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 7.350e-9
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:  340 VHREEGLELHLELVSKQRGSTRAGTKTAAMQEEMAA 447
            VHREEGLELHLELVSKQR STRAGTKTAAMQEEMAA
Sbjct:    2 VHREEGLELHLELVSKQRRSTRAGTKTAAMQEEMAA 37
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BLAST of mRNA_Ecto-sp13_S_contig2010.6572.1 vs. uniprot
Match: A0A836C7P2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7P2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.250e-5
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  247 WNALVLEYEMKINYLERALAQEESKLRIAEQVHREEGLELHLELV 381
            W  + LEYEM++ YLER LAQEE K+R+ EQ  R +GLEL +EL+
Sbjct:  554 WKDVALEYEMRVAYLERCLAQEEGKVRLLEQARRADGLELRVELL 598
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2010.6572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FYB0_ECTSI1.010e-7597.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L679_9PHAE4.270e-3578.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQR0_9PHAE7.350e-997.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7P2_9STRA2.250e-557.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2010contigEcto-sp13_S_contig2010:480..2304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size448
Hectar predicted targeting categoryother localisation
Exons4
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463011.3214786-CDS-Ecto-sp13_S_contig2010:480..5881681463011.3214786-CDS-Ecto-sp13_S_contig2010:480..588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 481..588 -
1681463011.331684-CDS-Ecto-sp13_S_contig2010:847..9941681463011.331684-CDS-Ecto-sp13_S_contig2010:847..994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 848..994 -
1681463011.341407-CDS-Ecto-sp13_S_contig2010:1657..17591681463011.341407-CDS-Ecto-sp13_S_contig2010:1657..1759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 1658..1759 -
1681463011.3496199-CDS-Ecto-sp13_S_contig2010:2214..23041681463011.3496199-CDS-Ecto-sp13_S_contig2010:2214..2304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2010 2215..2304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2010.6572.1prot_Ecto-sp13_S_contig2010.6572.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2010 481..2304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2010.6572.1

>prot_Ecto-sp13_S_contig2010.6572.1 ID=prot_Ecto-sp13_S_contig2010.6572.1|Name=mRNA_Ecto-sp13_S_contig2010.6572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
GKEAGSTAQNVPSAESVIKAKKVERIKIMQEKQLQEAAKTNEEAQGVINQ
LKVSLRQLEHRFKQTESMNTIVTTNRRKDNMKWNALVLEYEMKINYLERA
LAQEESKLRIAEQVHREEGLELHLELVSKQRGSTRAGTKTAAMQEEMAA
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mRNA from alignment at Ecto-sp13_S_contig2010:480..2304-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2010.6572.1 ID=mRNA_Ecto-sp13_S_contig2010.6572.1|Name=mRNA_Ecto-sp13_S_contig2010.6572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2010:480..2304- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAAGGAGGCTGGGTCAACTGCGCAGAACGTGCCGTCCGCGGAGTCGGT
GATCAAGGCCAAGAAAGTAGAGCGCATCAAAATCATGCAGGTCGGATACG
GCGATACTTGGGGCGTGGTTGCCAACTGACCTTGCTGTAGCTTCGATGCG
TCACACGGGGTATATCGAGTCGCATACATTTGTCTTGGTACGCGAGTCCC
ATTGATACGCTATTGTTCAATGTCGTCGTGGATTCAAGCGTAATCGATGA
ACGCTGTTGTTGGACAGAGCCGTTCCTGCCGCCACGCGGTGTTGCTAGGA
ACGCTCATGTTCTGAAGGGAAATGGTCGAATGTATTCCGCCTGTACCCTA
GGAAACGAATAGCTGATACATTACTCCAAACATTTTCTCTATCAGTAGGC
GATGGCATCCCGACATCTGGTCGCTGCGCATTCGTGCCGGAAGGGACGAC
GATATACATTCTTCACGCCGAGCGCGGCATCGCGTAGATGGGGAAATGTG
TTTGAACGCTACGCACATTGTGGACCTTGCAACTCAACACTTCAGGAGAA
ACAATTGCAGGAGGCCGCCAAGACTAACGAAGAAGCCCAAGGGGTGATCA
ACCAGCTTAAGGTCTCTCTCCGGCAGCTAGAGCACCGCTTCAAACAGGCA
AGAACGCATCGAAGAGAGCAGAAAAAGCCTGCCTCGCATGTTCCCCGAGC
ATACCACGATTATACCCGATACGTTGTCGTCTTCGCTGATCAGCTCGCGT
ACTGCCGATCAAAGCTCCCATTCATAGATTAAAGATGGTGCGTCTATAAT
GTAGATGATCGACGTAGCTAGGTCATTTGGCGGTATGAGCCCCTTGTCGA
AAACGTTGCTGCCATTTTGAAACCACTTTCGCAAGGGGGGCGAGGATGTG
GGGGACAGCAGCACGATTGAGCAACGGAAAATGAGTCTGGAAGCAACGCC
CGGGCCTTTATCTGCATCCAGGAATAAAGTTTGCCGCAGGGGGTGTTGAT
GTCCGCATGATCAGACGCGGCACTCACAGGCCCAAAGAAGAGCCTATACA
TGGTAGCCTCAGCATGCTACGACGCGTAGACAGTCGACGCAGGCAGCTCC
ACATTTCTCGCTCTTACCGTTTTGAGAACCTGCGGCTACGGAAATAAGCG
AATGCGGTGCCAACAGGGTCAGCAATCCAGCGCAATGTGGACTGACGGGA
GGATAGAAACAGTGATGCTTGCTAGCTCCCACAGCAGAGAGACGAACACC
ATATCGCGCCGGGTGTGTGTGCCTGTCTGGTGCTCTTGCTCGGCGGGTGC
TCGCTTGCAGACTGAATCGATGAACACGATCGTCACGACGAATCGGCGCA
AGGACAACATGAAGTGGAACGCCCTCGTGTTAGAGTACGAGATGAAGATC
AACTACCTGGAGCGCGCTCTGGCGCAGGAGGAGAGCAAGCTGAGGATCGC
GGAGCAGGTGCACCGTCTTCCGGGCCTTGCCACGGCTTTCCTTGGAATAG
GTCCTGTCGATGAGGGATTTGGACTTGTTCCATGCATGTCTCGCTTCTTG
TGGGAGTCTTCCCCGCAGGGAATATTTCTTTTCTTTCCTTTCGAATCAAG
CTAGGTGACAAGGGTGCCACGCTCAGGATTGCCCCCCCCCCCCCTCTGGT
CAATGGTCTAACCTCTAGGGCATGCAAGTATGAGTGCCCCCGCCCCGCCT
CCTGCTTGCTCCGAAGGTGCACAGAGAGGAAGGCCTAGAGCTTCACTTGG
AACTAGTATCGAAGCAGAGGGGGAGTACGCGCGCGGGGACAAAGACCGCG
GCAATGCAGGAGGAGATGGCGGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2010:480..2304-

>mRNA_Ecto-sp13_S_contig2010.6572.1 ID=mRNA_Ecto-sp13_S_contig2010.6572.1|Name=mRNA_Ecto-sp13_S_contig2010.6572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2010:480..2304- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAAGGAGGCTGGGTCAACTGCGCAGAACGTGCCGTCCGCGGAGTCGGT
GATCAAGGCCAAGAAAGTAGAGCGCATCAAAATCATGCAGGAGAAACAAT
TGCAGGAGGCCGCCAAGACTAACGAAGAAGCCCAAGGGGTGATCAACCAG
CTTAAGGTCTCTCTCCGGCAGCTAGAGCACCGCTTCAAACAGACTGAATC
GATGAACACGATCGTCACGACGAATCGGCGCAAGGACAACATGAAGTGGA
ACGCCCTCGTGTTAGAGTACGAGATGAAGATCAACTACCTGGAGCGCGCT
CTGGCGCAGGAGGAGAGCAAGCTGAGGATCGCGGAGCAGGTGCACAGAGA
GGAAGGCCTAGAGCTTCACTTGGAACTAGTATCGAAGCAGAGGGGGAGTA
CGCGCGCGGGGACAAAGACCGCGGCAATGCAGGAGGAGATGGCGGCC
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