mRNA_Ecto-sp13_S_contig20083.6564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20083.6564.1
Unique NamemRNA_Ecto-sp13_S_contig20083.6564.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20083.6564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20083contigEcto-sp13_S_contig20083:615..1053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size322
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463010.4060814-UTR-Ecto-sp13_S_contig20083:614..6251681463010.4060814-UTR-Ecto-sp13_S_contig20083:614..625Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20083 615..625 -
1681463010.438564-UTR-Ecto-sp13_S_contig20083:976..10531681463010.438564-UTR-Ecto-sp13_S_contig20083:976..1053Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20083 977..1053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463010.416646-CDS-Ecto-sp13_S_contig20083:625..6471681463010.416646-CDS-Ecto-sp13_S_contig20083:625..647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20083 626..647 -
1681463010.429017-CDS-Ecto-sp13_S_contig20083:764..9761681463010.429017-CDS-Ecto-sp13_S_contig20083:764..976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20083 765..976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20083.6564.1prot_Ecto-sp13_S_contig20083.6564.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20083 626..976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20083.6564.1

>prot_Ecto-sp13_S_contig20083.6564.1 ID=prot_Ecto-sp13_S_contig20083.6564.1|Name=mRNA_Ecto-sp13_S_contig20083.6564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MESLGVDAGVWPLGLKVAPTFGRPLRTKPCRLVGDRICVPYPTAFQVGGL
HVTAVPSAGRHASEPSMYIHRRRCTTT*
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mRNA from alignment at Ecto-sp13_S_contig20083:615..1053-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20083.6564.1 ID=mRNA_Ecto-sp13_S_contig20083.6564.1|Name=mRNA_Ecto-sp13_S_contig20083.6564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=439bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20083:615..1053- (Ectocarpus species13 EcNAP12_S_4_19m)
CATATACCACCCAAAGCTGGAGGGCGAGGGCACGCGTGAAGAAAACTTCA
CGAACAAGCACAGCGCACCCGTGGTCCATGGAGTCCCTCGGAGTGGATGC
CGGGGTCTGGCCTCTGGGCCTAAAAGTCGCACCAACATTTGGCCGACCGC
TAAGAACAAAACCGTGTAGGTTGGTTGGCGACAGGATCTGCGTGCCATAC
CCGACAGCGTTTCAAGTTGGTGGTCTTCACGTAACAGCGGTACCCAGCGC
AGGCAGGCACGCCTCCGAACCTTCCATGTACATACACAGGTGACGAGAGT
GGCAAGAGTCAATATTATCGAGCACCCGCCTGTGTACATCTTTCCCCCGC
CCTCCCCTCCCACTCTCAACCATCCTCCCTGCACTCTCTCTCTCATCGCG
ATCCAGGCGCCGGTGCACGACGACCTGACGAGAGCGTAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20083:615..1053-

>mRNA_Ecto-sp13_S_contig20083.6564.1 ID=mRNA_Ecto-sp13_S_contig20083.6564.1|Name=mRNA_Ecto-sp13_S_contig20083.6564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20083:615..1053- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCCCTCGGAGTGGATGCCGGGGTCTGGCCTCTGGGCCTAAAAGT
CGCACCAACATTTGGCCGACCGCTAAGAACAAAACCGTGTAGGTTGGTTG
GCGACAGGATCTGCGTGCCATACCCGACAGCGTTTCAAGTTGGTGGTCTT
CACGTAACAGCGGTACCCAGCGCAGGCAGGCACGCCTCCGAACCTTCCAT
GTACATACACAGGCGCCGGTGCACGACGACCTGA
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