mRNA_Ecto-sp13_S_contig20051.6546.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20051.6546.1
Unique NamemRNA_Ecto-sp13_S_contig20051.6546.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: D7FT45_ECTSI (Spermidine/spermine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT45_ECTSI)

HSP 1 Score: 518 bits (1335), Expect = 4.460e-185
Identity = 258/268 (96.27%), Postives = 259/268 (96.64%), Query Frame = 1
Query:   52 LQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEE 855
            +QVVET PFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQ        EFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEE
Sbjct:   11 VQVVETAPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQ--------EFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEE 270          
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: A0A7S2V6Z8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z8_9STRA)

HSP 1 Score: 330 bits (845), Expect = 3.900e-110
Identity = 168/269 (62.45%), Postives = 197/269 (73.23%), Query Frame = 1
Query:   46 RMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYR-RKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAV 849
            + +Q++ET  FG TLVLDGKTQSA  DEFIYHE LVHPAML HPNPK+VYIGGGGELATARE LRHKSVE+ VM DLDK+VVD S + LPEW AG   DPRLEL Y DAHA+L  +++ +DVIIMDIADPIEAGPGYILYT+        EFYK+A TRL+PGGVLVTQSG  +     ECFT IH TLK  F  V      +PSFGC W FN+AS  S  +T+ Y   K +   D +I  RI G L+FYDGV+H G+FG PK++RAA+
Sbjct:   33 QRVQIIETNEFGTTLVLDGKTQSALRDEFIYHECLVHPAMLLHPNPKKVYIGGGGELATAREALRHKSVERVVMCDLDKMVVDVSMEHLPEWNAGCHLDPRLELAYGDAHAWLLNNDEQFDVIIMDIADPIEAGPGYILYTE--------EFYKYAMTRLTPGGVLVTQSGPGSNTTHGECFTAIHNTLKQAFPTVIPYTVSIPSFGCDWAFNVASIDSGVDTQAYGVGKPMGDLDEEISKRIDGELKFYDGVSHVGIFGTPKYIRAAL 293          
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: A0A836C836_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C836_9STRA)

HSP 1 Score: 330 bits (846), Expect = 1.450e-109
Identity = 167/279 (59.86%), Postives = 206/279 (73.84%), Query Frame = 1
Query:   46 RMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDM-YDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYRRKE--VAATDSDIEARITG-------TLRFYDGVTHGGLFGVPKWLRAAVE 852
            + +QV++  PFGKTLVLDGK+QSA  DEF+YHE LVHPAML H NPKRV+IGGGGE ATARE+LRH+SVEKC+MVDLDK+VVD S+D LPEWGAG  DD RLE++Y DAHA+LR+ +   +DVI MDIADPIEAGPGY+LYT+        EFY++ATT+L+ GG++VTQSG  +++  +ECFTVIH+TL S F+H      DVPSFGC W F LA ++     +     E  VAATD+ I ARI G        LRFYDG  H G+FG PKWLR A++
Sbjct:   74 QRIQVIDCAPFGKTLVLDGKSQSAAGDEFVYHEALVHPAMLLHGNPKRVFIGGGGEGATAREMLRHRSVEKCIMVDLDKMVVDVSKDKLPEWGAGCWDDDRLEVYYQDAHAWLRDYKGPPFDVICMDIADPIEAGPGYVLYTE--------EFYRYATTQLAEGGIIVTQSGPGSLNTHEECFTVIHRTLASAFKHAVPYTVDVPSFGCTWAFTLAFNACAGAADAAAVVEMSVAATDAAIAARIGGGGSSGSSALRFYDGAAHLGMFGTPKWLRRALD 344          
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: A0A6A4DP37_9STRA (PABS domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DP37_9STRA)

HSP 1 Score: 327 bits (839), Expect = 6.850e-109
Identity = 163/273 (59.71%), Postives = 204/273 (74.73%), Query Frame = 1
Query:   46 RMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASD----SSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVE 852
            + +Q++ET  FGKTLVLDGKTQSA+ DE IYHETLVHPA+LAHPNPK VYIGGGGE ATAREVL+HKSVEK VMVD+D+LV +  R  LPEW  G  +DPRLE+HYTDAHAFL++ +  +DVIIMDIADPIEAGPGY+LYT+        EFYK+A T+L+ GG +VTQSG  AV+  DECF+ IH TLK+ F  V+    D+PSFGC W FN+A++             R + +A T+S IE+RI+  L+F DGV+H GLFG+PK +R ++E
Sbjct:   53 QTMQIIETHSFGKTLVLDGKTQSAKNDEAIYHETLVHPALLAHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKELPEWNDGAFEDPRLEVHYTDAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTE--------EFYKYALTKLNKGGFMVTQSGPGAVYNWDECFSSIHCTLKTNFNTVAPYTVDIPSFGCIWAFNMATNVEDGDGVAAVTAIRERSIATTNSLIESRISKPLKFLDGVSHMGLFGLPKIVRESLE 317          
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: A0A2D4BNJ7_PYTIN (Spermidine synthase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNJ7_PYTIN)

HSP 1 Score: 325 bits (834), Expect = 3.670e-108
Identity = 158/271 (58.30%), Postives = 203/271 (74.91%), Query Frame = 1
Query:   46 RMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTE--EYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVE 852
            + +Q++ET  FGKTL+LDGKTQSA+ DE +YHE+LVHPA++AHPNPK VYIGGGGE ATAREVL+H SVEK VMVD+D++V D  R  LPEW  G  +DPRLE+HYTDAHAFL+E +  +DVIIMDIADPIEAGPGY+LYT+        EFYK+A T+L+ GG  VTQSG  A++  DECF+ IH TLK+ F  V     D+PSFGC W FNLA++++         R++ +A TD+ ++ARI   L+ YDG++H GLFGVPK +R A++
Sbjct:   53 QTMQIIETTSFGKTLLLDGKTQSAKXDEAVYHESLVHPALIAHPNPKTVYIGGGGEFATAREVLKHPSVEKVVMVDIDEMVCDLCRKELPEWSDGCFEDPRLEVHYTDAHAFLKEYDGTFDVIIMDIADPIEAGPGYVLYTE--------EFYKYAVTKLNAGGFFVTQSGPGALYNWDECFSAIHSTLKTAFNTVLPYTVDIPSFGCQWAFNLATNATDAAATGVAIRQRPIAETDALVKARINKPLKHYDGLSHLGLFGVPKPIRDALD 315          
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: A0A0P1AJP4_PLAHL (Spermidine synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJP4_PLAHL)

HSP 1 Score: 324 bits (830), Expect = 2.000e-107
Identity = 161/275 (58.55%), Postives = 203/275 (73.82%), Query Frame = 1
Query:   46 RMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEE-----YRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEE 855
            + +Q++ET  FGKTLVLDGKTQSA+LDE IYHETLVHPAMLAH NPK V+IGGGGE ATAREVL+HKSVEK VMVD+D+LV +  R  +PEW  G  +DPRLE+HYTDAHAFL++    +DVIIMDIADPIEAGPGY+LYT+        EFY++A T+L+ GG +VTQSG  AV+  DECFT I+ TLK+ F  V     ++PSFGC W FN+A++    N  E      R + +  T++ +E+RI   L FYDGV+H GLFG+PK +R A+E+
Sbjct:   51 QSMQIIETYSFGKTLVLDGKTQSAKLDEAIYHETLVHPAMLAHKNPKTVFIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKEMPEWADGAFEDPRLEVHYTDAHAFLKQYNGTFDVIIMDIADPIEAGPGYVLYTE--------EFYEYANTKLNKGGYIVTQSGPGAVYNYDECFTSIYCTLKTNFNSVVPYTVEIPSFGCAWAFNMATNVEDENGGEATVKAIRERSIDETNALVESRIKKPLHFYDGVSHLGLFGLPKMVREALEK 317          
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: A0A484DTM6_BRELC (PABS domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTM6_BRELC)

HSP 1 Score: 323 bits (827), Expect = 3.830e-107
Identity = 162/274 (59.12%), Postives = 205/274 (74.82%), Query Frame = 1
Query:   46 RMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLAS-----DSSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVE 852
            + +Q++ET  FGK LVLDGKTQSA+ DE IYHE LVHPA+L HPNPK VYIGGGGE ATAREVL+HKSVEK VMVD+D+LV +  R  +PEW AG  +DPRLE+HYTDAHAFL++ E  +DVIIMDIADPIEAGPGY+LYT+        EFYK+A+T+L+ GG +VTQSG  AV+  DECF+ I+ TLK+ F  V     D+PSFGC WGFN+A+     D +   T   R + +AATD+ +++RI   L++ DGV+H GLFG+PK +R A+E
Sbjct:   48 QAMQIIETNSFGKMLVLDGKTQSARSDEAIYHEALVHPALLNHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKEMPEWSAGAFEDPRLEVHYTDAHAFLKQYEGTFDVIIMDIADPIEAGPGYVLYTE--------EFYKYASTKLNKGGYMVTQSGPGAVNNWDECFSSIYCTLKTSFNTVVPYTVDIPSFGCVWGFNMATNVDNEDGAAVLTS-IRERSIAATDALVKSRIRQRLQYLDGVSHMGLFGLPKIVREALE 312          
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: K3WN33_GLOUD (PABS domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WN33_GLOUD)

HSP 1 Score: 322 bits (825), Expect = 7.970e-107
Identity = 156/271 (57.56%), Postives = 201/271 (74.17%), Query Frame = 1
Query:   46 RMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNT--EEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVE 852
            + +Q++ET  FGKTLVLDGKTQSA+ DE +YHE+LVHPA++AHPNPK VYIGGGGE ATAREVL+HKSVEK VMVD+D++V +  R  +PEW  G  +DPRLE+HYTDAHAFL++ +  +DVIIMDIADPIEAGPGY+LYT+        EFYKFA T+L+ GG  VTQSG  A++  DECF+ I+ TLK+ F  V     D+PSFGC W +N+A++    +      R + +  TD+ + ARI   L+FYDG++H GLFGVPK +R A+E
Sbjct:   51 QTMQIIETHSFGKTLVLDGKTQSAKTDEAVYHESLVHPALIAHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDEMVCNMCRKEMPEWADGAFEDPRLEVHYTDAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTE--------EFYKFAVTKLNKGGYFVTQSGPGALYNWDECFSAIYSTLKTAFNTVLPYTVDIPSFGCVWAYNMATNHEDGDKALNAIRSRAIEETDAIVTARIPQPLKFYDGLSHLGLFGVPKPIRDALE 313          
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: A0A3R7KTL5_9STRA (PABS domain-containing protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7KTL5_9STRA)

HSP 1 Score: 322 bits (825), Expect = 5.270e-106
Identity = 158/272 (58.09%), Postives = 202/272 (74.26%), Query Frame = 1
Query:   46 RMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASD---SSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVE 852
            + +Q++ET  FGKTLVLDGKTQSA+ DE IYHETLVHP+MLAHPNPK VYIGGGGE ATAREVL+HKSVEK VMVD+D+LV +  R  +PEW  G  +DPRLE+HYTDAHAFL++ +  +DVIIMDIADPIEAGPGY+LYT+        EFYK+A T+L+ GG +VTQSG  AV+  +ECF+ I+ TLK+ F  V     D+PSFGC W FN+A++          + R + +A T+  +E R++  L+F DGV+H GLFG+PK +R A+E
Sbjct:  108 QTMQIIETHSFGKTLVLDGKTQSAKNDESIYHETLVHPSMLAHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKEMPEWADGAFEDPRLEVHYTDAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTE--------EFYKYAQTKLNKGGFMVTQSGPGAVYNWNECFSAIYSTLKTSFNTVVPYSVDIPSFGCVWAFNMATNVDHDGDVAVTDIRERRIAITNELVETRLSKPLKFLDGVSHMGLFGLPKVVREALE 371          
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Match: A0A024G9Q2_9STRA (PABS domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9Q2_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.100e-105
Identity = 161/285 (56.49%), Postives = 196/285 (68.77%), Query Frame = 1
Query:   10 CPSFVCSPLGVVRMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLA---SDSSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEE 855
            C  F        + +Q++ET  FGKTLVLDGKTQSAQLDE +YHETLVHPA+L HPNPK V+IGGGGE ATAREVL+H SVEK VMVD+D+LV +  R  +PEW  G  +DPR E+HY DAHAFL++ +  +DVIIMDIADPIEAGPGY+LYTQ        EFY++A T+L+  GVLVTQSG  A++   ECF  IH TLK+ F  V     D+PSFGC W FNLA    D         R +    TD  I  R++  L+FYDGV+H G+FGVPK +R AVE+
Sbjct:   33 CTRFAFEAQSDFQKMQIIETRSFGKTLVLDGKTQSAQLDEMVYHETLVHPALLCHPNPKTVFIGGGGEFATAREVLKHNSVEKVVMVDIDELVCNLCRKEMPEWNDGAYEDPRTEVHYADAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTQ--------EFYQYAQTKLNKNGVLVTQSGPGALYNWHECFASIHATLKTAFSTVLPFTVDIPSFGCVWAFNLALNDQDGGEDAVSLIRERCAKDTDVLIADRLSKPLKFYDGVSHKGIFGVPKAIREAVEK 309          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20051.6546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT45_ECTSI4.460e-18596.27Spermidine/spermine synthase n=1 Tax=Ectocarpus si... [more]
A0A7S2V6Z8_9STRA3.900e-11062.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836C836_9STRA1.450e-10959.86S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A6A4DP37_9STRA6.850e-10959.71PABS domain-containing protein n=6 Tax=Phytophthor... [more]
A0A2D4BNJ7_PYTIN3.670e-10858.30Spermidine synthase n=2 Tax=Pythium insidiosum Tax... [more]
A0A0P1AJP4_PLAHL2.000e-10758.55Spermidine synthase n=1 Tax=Plasmopara halstedii T... [more]
A0A484DTM6_BRELC3.830e-10759.12PABS domain-containing protein n=1 Tax=Bremia lact... [more]
K3WN33_GLOUD7.970e-10757.56PABS domain-containing protein n=2 Tax=Pythiaceae ... [more]
A0A3R7KTL5_9STRA5.270e-10658.09PABS domain-containing protein n=18 Tax=Peronospor... [more]
A0A024G9Q2_9STRA1.100e-10556.49PABS domain-containing protein n=1 Tax=Albugo cand... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20051contigEcto-sp13_S_contig20051:293..3188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score522.7
Seed ortholog evalue1.1e-145
Seed eggNOG ortholog2880.D7FT45
Preferred nameSPS1
Model size857
KEGG koko:K18787
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0009888,GO:0009914,GO:0009926,GO:0009987,GO:0010087,GO:0010089,GO:0010487,GO:0010817,GO:0016740,GO:0016765,GO:0016768,GO:0030154,GO:0032502,GO:0044424,GO:0044464,GO:0048759,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0060918,GO:0065007,GO:0065008,GO:1905177
Exons5
EggNOG free text desc.spermidine synthase activity
EggNOG OGsCOG0421@1,KOG1562@2759
EC2.5.1.79
Cds size855
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.054247-CDS-Ecto-sp13_S_contig20051:292..4811681463009.054247-CDS-Ecto-sp13_S_contig20051:292..481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20051 293..481 +
1681463009.0648227-CDS-Ecto-sp13_S_contig20051:1061..11541681463009.0648227-CDS-Ecto-sp13_S_contig20051:1061..1154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20051 1062..1154 +
1681463009.0821226-CDS-Ecto-sp13_S_contig20051:1914..21271681463009.0821226-CDS-Ecto-sp13_S_contig20051:1914..2127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20051 1915..2127 +
1681463009.0934534-CDS-Ecto-sp13_S_contig20051:2547..27691681463009.0934534-CDS-Ecto-sp13_S_contig20051:2547..2769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20051 2548..2769 +
1681463009.1025999-CDS-Ecto-sp13_S_contig20051:3050..31881681463009.1025999-CDS-Ecto-sp13_S_contig20051:3050..3188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20051 3051..3188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20051.6546.1prot_Ecto-sp13_S_contig20051.6546.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20051 293..3188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20051.6546.1

>prot_Ecto-sp13_S_contig20051.6546.1 ID=prot_Ecto-sp13_S_contig20051.6546.1|Name=mRNA_Ecto-sp13_S_contig20051.6546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp
MNDCPSFVCSPLGVVRMLQVVETVPFGKTLVLDGKTQSAQLDEFIYHETL
VHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTS
RDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGP
GYILYTQARLIGGKTEFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVI
HKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYRRKEVAATD
SDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEE
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mRNA from alignment at Ecto-sp13_S_contig20051:293..3188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20051.6546.1 ID=mRNA_Ecto-sp13_S_contig20051.6546.1|Name=mRNA_Ecto-sp13_S_contig20051.6546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2896bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20051:293..3188+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGATTGTCCGTCCTTTGTTTGTTCCCCTCTTGGTGTTGTGCGGAT GTTGCAGGTGGTTGAAACGGTGCCTTTCGGGAAGACTCTGGTCCTAGACG GGAAGACGCAGTCCGCGCAGCTGGACGAGTTCATTTACCACGAGACGCTG GTTCACCCGGCCATGCTGGCGCATCCCAACCCAAAGCGGGTGGGTCTCGG GATCTGTGATGAACATCACACGCCTCGCGCTATCTAAAAACACTGTTTGT TAACATGCTTTGAGGATCCGAGCTCTTCAGCCAGAGGAGCAAGGAAGAAG CATGGGCAAAACTGCAAGCGCTGGGTTTTTGAACGGATGCCCGAGCTGGG CGGTTGGTCATGATTTTTTTTTTCTGAACGAAAGCCGCAGGCACGCGGAG TCATGTTCATGTGCGGGGTCCGCATGGAGTGCGCTACAGCAGTAGCAGTG GTGGGATGTCGTGTGCATGTCTTGCAGGGTGACGGCCGGAGCATGCGCAA ATCTAGCCGCCACGGCGCGAGAGCCACTCTTTCGTTTCCATTGGTCGGTC CATTGGTTGGTGGAACATCCCGGGGGGAGGTGCGAGCGGCGGAGAGACAC GGTCTTGTGTTTTACGGAGTATGCCCAAATACTGGCGGTTGTCCCACCCA CTGTCTCCACCCACGCGAGACGTTTGGCACGTTTGTTGTAATACGCCGCC CCGAATAAACTACCCGCTTCATGTTCGTGTTCGGTTGTCCTAACCGTGGG ATACCGTGGGATGCCGAAGGTTTACATCGGGGGTGGAGGAGAGCTGGCCA CGGCACGAGAAGTACTGCGGCACAAGTCGGTGGAGAAGTGCGTTATGGTC GACTTGGACAAGGTTGGTGTACACTCACCTGTTGCCTTCTCTTTCTCTCT CTCCCGTCTAGATCACTAATCACTCTTGTGTGTGTTCTCTCTCTGTCCGC ATCCCTAGTCATGCGCTCCTTAACCTTCTCTCGTGAGCAGGCATCCTTTA ACCTCGAGGTCGTTGCTCGTTCCGTACAGTTTGCACATACGTAGCTCGAT CCTCCCCGGAATCGCAATCGAGTTGACGAGTTGAAGAATGAAACAAGTTT GAACAAAAAAGAAATGAGACTTGGTGCCACTGCCGCTGCGCTGCTGCAGA TTTTCTGTTCGGTCCTTGTTTTCAACTGAGCGGACGAGCGATGACGTCCG TGCTCCCCGGAGGCCGTACAACAAGTCTGCTCTTTGAGAGATGCCCACGC CCATGTTATCGTCTACACCTTCCCATCGTTTGGTTGATATGATCTCCCGG CCTTGTCTGTTGGTCTCTCTTGGTTTAGCTTTTGTAGCTCATAAGCATCC CCTATCCCCCCCCTACCTCAATCGCAGCGGAGGGATCCCCCCCGTCCTGT GATTGGCTGCTACGTAGTTCGCTTCCCTTCTCCGCCCCACACACATGTGA TTGCACACACCTGCAACGCGTGAATATACCTACGTGGCGGAGCTTCGTAG TACGGACACTTGGAGAAAACAGACACTTGGAATACAGGGCATCCCTCACC GATCCTAACATGGACACACTTCCCCCCCCCCCACCCAATTTTCCTTCTTT TTACCCGTGCACGCCTGCATAGTTGGTGGTGGATACCTCGAGGGATGTGT TGCCGGAGTGGGGGGCGGGGGTGCTCGACGACCCACGACTGGAGCTCCAT TATACCGACGCGCACGCCTTCCTCCGCGAGAGCGAGGACATGTATGACGT CATCATCATGGACATCGCCGACCCTATCGAGGCTGGCCCGGGGTACATCC TATACACGCAGGCGAGACTTATTGGTGGTAAAACGGTAATGCTAAAGTAG GGGATATGGTTGTGTGCTACTTCATTGATTTGACTTGAGACGGTGATAAC GTTCTGCTCTCTGTTTTTTTCTTTCCTATGTTTGATAAAATAAAGCAAGG TGGTAGTGCTCAACTACGAGTTGGGTGGAACATGGCAAGGGTAGGCGTTC GGGTGGGAAGGATGTGTTTGGATGCTTTCTGCGTTTCTCCCGTATGCATA CGTCCGTTTTTTTTGTGTTTTTGTGCTGTTTGTTGACGTGCCCCCGTCAT TTACACCGCATCTTCGTTAAGTAAAATAAAAAAAAATGGTCGAAGTACAA CGTGAACCTCCCACCCTGCAAAATAATGGAAATCTTCGCACGAAAATCAA ACCGAAATTACAAAACAGCAACAACCTTCTTGGTGTGTGAAAAAAAAAAA CGCAGGAGTTCTACAAGTTCGCAACAACGAGGCTTTCTCCCGGGGGGGTG CTGGTCACCCAGTCCGGTGCTGCCGCGGTGCACCTCAAAGACGAGTGCTT CACCGTCATCCACAAGACACTCAAGTCCGTCTTCCAGCACGTGTCCATGT CGGTAGCTGACGTGCCGTCGTTTGGCTGCTGCTGGGGCTTCAACCTTGCC TCGGACTCGAGCACGTTCAATACAGAGGTAGATTTGCTGGGGGAGGATTC TCATGATTTGCATGCCTTCGTGCAAAACAGCATCATGTACAACATCTGTT GAACTTGGTGGGTGGTTTCGCTGGAGTTCTTTGCGCGCAAGCAAAAACAA CAGATGCCGATATCTGATAATTTGGTGAGTGGTTTCCCAGGAGTAATGCG AGTGCAACAAACAGATGTAACATTTGTTGGATGGTTTCCCAGAGTTCTTT GAAAGCAAACAACAACAACAACAACAACAACTGATGAACTTATTGCATGT TTTTCCAGGAGTACCGCCGGAAGGAGGTAGCGGCGACGGACTCGGACATC GAGGCAAGGATTACGGGCACCCTGCGGTTCTACGACGGTGTCACCCACGG CGGACTTTTCGGGGTTCCCAAGTGGCTCCGGGCGGCGGTAGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20051:293..3188+

>mRNA_Ecto-sp13_S_contig20051.6546.1 ID=mRNA_Ecto-sp13_S_contig20051.6546.1|Name=mRNA_Ecto-sp13_S_contig20051.6546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20051:293..3188+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGATTGTCCGTCCTTTGTTTGTTCCCCTCTTGGTGTTGTGCGGAT
GTTGCAGGTGGTTGAAACGGTGCCTTTCGGGAAGACTCTGGTCCTAGACG
GGAAGACGCAGTCCGCGCAGCTGGACGAGTTCATTTACCACGAGACGCTG
GTTCACCCGGCCATGCTGGCGCATCCCAACCCAAAGCGGGTTTACATCGG
GGGTGGAGGAGAGCTGGCCACGGCACGAGAAGTACTGCGGCACAAGTCGG
TGGAGAAGTGCGTTATGGTCGACTTGGACAAGTTGGTGGTGGATACCTCG
AGGGATGTGTTGCCGGAGTGGGGGGCGGGGGTGCTCGACGACCCACGACT
GGAGCTCCATTATACCGACGCGCACGCCTTCCTCCGCGAGAGCGAGGACA
TGTATGACGTCATCATCATGGACATCGCCGACCCTATCGAGGCTGGCCCG
GGGTACATCCTATACACGCAGGCGAGACTTATTGGTGGTAAAACGGAGTT
CTACAAGTTCGCAACAACGAGGCTTTCTCCCGGGGGGGTGCTGGTCACCC
AGTCCGGTGCTGCCGCGGTGCACCTCAAAGACGAGTGCTTCACCGTCATC
CACAAGACACTCAAGTCCGTCTTCCAGCACGTGTCCATGTCGGTAGCTGA
CGTGCCGTCGTTTGGCTGCTGCTGGGGCTTCAACCTTGCCTCGGACTCGA
GCACGTTCAATACAGAGGAGTACCGCCGGAAGGAGGTAGCGGCGACGGAC
TCGGACATCGAGGCAAGGATTACGGGCACCCTGCGGTTCTACGACGGTGT
CACCCACGGCGGACTTTTCGGGGTTCCCAAGTGGCTCCGGGCGGCGGTAG
AGGAG
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