mRNA_Ecto-sp13_S_contig20049.6542.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20049.6542.1
Unique NamemRNA_Ecto-sp13_S_contig20049.6542.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: D7FSH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH2_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 4.260e-64
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1
Query:   16 QELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKV 342
            +ELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRV KKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGK+
Sbjct: 1017 KELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVLKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKL 1125          
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: A0A6H5L229_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L229_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 4.380e-64
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1
Query:   16 QELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKV 342
            +ELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRV KKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGK+
Sbjct: 1068 KELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVLKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKL 1176          
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: A0A0S7FYD5_9TELE (UBP4 n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7FYD5_9TELE)

HSP 1 Score: 132 bits (333), Expect = 1.410e-36
Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   19 ELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKV 342
            ++W    S V+P   K+ + +FAPQF+GY QQDSQE+L+FLLDGLHEDLNRV KKPYL L D E GRPD I+A E+W+   +R+ S++V+  +G FKSTL C +C KV
Sbjct:   49 QMWMSRSSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAE-GRPDDIVAKEAWKNHRLRNDSIIVDIFHGLFKSTLVCPECSKV 155          
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: UPI00052A1286 (ubiquitin carboxyl-terminal hydrolase 4-like n=1 Tax=Chlamydotis macqueenii TaxID=187382 RepID=UPI00052A1286)

HSP 1 Score: 132 bits (331), Expect = 3.490e-36
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 1
Query:   16 QELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKV 342
            +++W G  S V+P   K+ + +FAPQF+GY QQDSQE+L+FLLDGLHEDLNRV KKPYL L D   GRPDS +A E+WE   +R+ S++V+  +G FKSTL C +C KV
Sbjct:   57 KQIWSGRQSHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDAN-GRPDSEVAKEAWENHRLRNDSIIVDIFHGLFKSTLVCPKCSKV 164          
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: A0A425DJL6_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DJL6_9STRA)

HSP 1 Score: 131 bits (329), Expect = 4.560e-36
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 1
Query:   16 QELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKV 342
            +ELW G+ SSVSP  LK AI  FAPQF+GY Q D+QE+L+FLLDGLHED+NR+  KPY+   D     PD+ +AA +W+   +R+ SV V++L+GQFKST+ C  C KV
Sbjct:   48 KELWLGTASSVSPGPLKRAIGTFAPQFSGYQQHDAQELLAFLLDGLHEDVNRITNKPYVEAIDSNGTEPDAAVAATAWQNHLLRNASVFVDTLHGQFKSTVVCPHCAKV 156          
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: A0A3L6VVT3_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VVT3_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.290e-36
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   19 ELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKV 342
            ELW G+ SSVSP  LK AI  FAPQF+GY Q D+QE+L+FLLDGLHED+NR+  KPY+   D     PD+ +AA +W+   +R+ SV V++L+GQFKST+ C  C KV
Sbjct:    1 ELWLGTASSVSPGPLKRAIGTFAPQFSGYQQHDAQELLAFLLDGLHEDVNRITNKPYVEAVDSNGTEPDAAVAATAWQNHLLRNASVFVDTLHGQFKSTVVCPHCAKV 108          
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: I0YQZ0_COCSC (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQZ0_COCSC)

HSP 1 Score: 135 bits (339), Expect = 6.560e-36
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 1
Query:   22 LWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCG 336
            LW G   SVSP G K+A+A+FAPQF GYSQQDSQE+L+FLLDGLHEDLNRV +KPY+   D E GRPD ++AAE+W+ +  R+ SV+V+   G +KSTL C QC 
Sbjct:   63 LWQGGVGSVSPKGFKAALARFAPQFGGYSQQDSQELLAFLLDGLHEDLNRVRQKPYVEEADAE-GRPDKVVAAEAWDNYRKRNDSVVVDHFQGLYKSTLVCPQCS 166          
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: A0A8C9GLB3_9PRIM (USP domain-containing protein n=1 Tax=Piliocolobus tephrosceles TaxID=591936 RepID=A0A8C9GLB3_9PRIM)

HSP 1 Score: 134 bits (337), Expect = 1.040e-35
Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 1
Query:   16 QELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKV 342
            +++W G  + V+P   K+ + +FAPQF+GY QQDSQE+L+FLLDGLHEDLNRV KKPYL L D   GRPD+++A E+WE   +R+ SV+V++ +G FKSTL C +C KV
Sbjct:   95 KQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDAN-GRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKV 202          
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: A0A418B1S9_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B1S9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.680e-35
Identity = 60/109 (55.05%), Postives = 83/109 (76.15%), Query Frame = 1
Query:   16 QELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKV 342
            QELW G+ SSVSP  LK AI  FAPQF+GY Q D+QE+L++LLDGLHED+NR+ KKPY+ + D     PD+++AA +W    +R++S++V++L+GQFKST+ C  C KV
Sbjct:  265 QELWLGTASSVSPGPLKRAIGTFAPQFSGYQQHDAQELLAYLLDGLHEDVNRITKKPYVQVQDSNGTEPDAVVAATAWRHHKLRNESIVVDTLHGQFKSTVVCPHCDKV 373          
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Match: A0A3Q2T1G7_FUNHE (Ubiquitin specific peptidase 4 (proto-oncogene) n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2T1G7_FUNHE)

HSP 1 Score: 132 bits (333), Expect = 1.910e-35
Identity = 62/109 (56.88%), Postives = 80/109 (73.39%), Query Frame = 1
Query:   16 QELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDGLHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYGQFKSTLECQQCGKV 342
            +++W    S V+P   K+ + +FAPQF+GY QQDSQE+L+FLLDGLHEDLNRV KKPYL L D E GRPD I+A E+W    +R+ SV+V+  +G FKSTL C +C KV
Sbjct:   87 KQMWMSRSSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLALRDAE-GRPDDIVAKEAWTNHRLRNDSVIVDIFHGLFKSTLVCPECSKV 194          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20049.6542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSH2_ECTSI4.260e-6497.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L229_9PHAE4.380e-6497.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0S7FYD5_9TELE1.410e-3656.48UBP4 n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
UPI00052A12863.490e-3656.88ubiquitin carboxyl-terminal hydrolase 4-like n=1 T... [more]
A0A425DJL6_9STRA4.560e-3655.05USP domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A3L6VVT3_9STRA6.290e-3655.56USP domain-containing protein (Fragment) n=1 Tax=A... [more]
I0YQZ0_COCSC6.560e-3660.95Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A8C9GLB3_9PRIM1.040e-3555.96USP domain-containing protein n=1 Tax=Piliocolobus... [more]
A0A418B1S9_9STRA1.680e-3555.05Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A3Q2T1G7_FUNHE1.910e-3556.88Ubiquitin specific peptidase 4 (proto-oncogene) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20049contigEcto-sp13_S_contig20049:1873..3098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score220.3
Seed ortholog evalue4.6e-55
Seed eggNOG ortholog2880.D7FSH2
Model size345
KEGG koko:K11835,ko:K11837,ko:K11847
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
Ec32 ortholog descriptionUbiquitin carboxyl-terminal hydrolase USP
Ec32 orthologEc-11_003720.1
EC3.4.19.12
Cds size345
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.6921406-CDS-Ecto-sp13_S_contig20049:1872..20161681463008.6921406-CDS-Ecto-sp13_S_contig20049:1872..2016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20049 1873..2016 -
1681463008.7041337-CDS-Ecto-sp13_S_contig20049:2897..30981681463008.7041337-CDS-Ecto-sp13_S_contig20049:2897..3098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20049 2898..3098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20049.6542.1prot_Ecto-sp13_S_contig20049.6542.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20049 1873..3098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20049.6542.1

>prot_Ecto-sp13_S_contig20049.6542.1 ID=prot_Ecto-sp13_S_contig20049.6542.1|Name=mRNA_Ecto-sp13_S_contig20049.6542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
FPGPRQELWFGSGSSVSPSGLKSAIAKFAPQFNGYSQQDSQEVLSFLLDG
LHEDLNRVPKKPYLTLPDGECGRPDSIIAAESWEMFGMRDKSVLVESLYG
QFKSTLECQQCGKV*
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mRNA from alignment at Ecto-sp13_S_contig20049:1873..3098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20049.6542.1 ID=mRNA_Ecto-sp13_S_contig20049.6542.1|Name=mRNA_Ecto-sp13_S_contig20049.6542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1226bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20049:1873..3098- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCCTGGCCCGCGGCAGGAGCTGTGGTTCGGCAGTGGGAGCTCGGTATC CCCCTCAGGCCTCAAGAGCGCCATTGCGAAGTTCGCCCCGCAGTTCAACG GCTACTCGCAGCAGGACTCACAGGAGGTCCTGTCCTTCCTCCTGGACGGA CTGCACGAGGACCTCAACAGAGTGCCGAAGAAGCCCTACCTCACGCTCCC GGTGAGATGGTGGATCGGAGATTCTTCGTCTAGAGACGACCTGTTGAGGA ATGATGACACGAAGAGGTCACTACTGAGCAACATCAGTCTGCACGCCGGA GTAAGAATCTGCTGTTATCGATGGCCCCGGATGTAGACTACAGCAGCAAG TACTCATCCACCAGATGTGGTGGTATTCGCATGTGCCGCCTCAACCGAAT CATCTCTCCGGGACGACTTCTAATTAACTTGGACGATATGAATCTCAAAG CCAACGGCCATCGCCGGAGGGCCGAGCATCTCCGCGACGTTTTGTCTCGA AACTGTTTTTCCTCGTTTTACGACAAAGATCATCACCTTCTCTTCATCAA GAGCATGTGTTACCAGGTGTTCCATGCATGACGGGGGTAGACGCATGCGC AGGCCACTTAGCGTAGAGGGTTCGGTTTCGTGTTTAGTGGTCTTTTCATA ACGACACACACACGAAAAATGTTGAGCCTTATTTACTCCAACAGGGCGTC ATCCAGAAGCCCTGTATCAAGCTGCAGTGAGGTAAGACTTGGTGACTGAT TTTGTGGATTTGTTCGGTTATCACGGCCGGGTCGTGGGGGTCGTTTTTGG TCTACCCCTCGCCACCGGTCTTGTCGATTCCTTCTTGTACAAAGTGTACA CGGACACGATATTGCAAGAGGGGGGGGGAGCATGCCTGTGGCCACGGGTC CGGAAGATCAGTTTTTTTTCTTCGTTGTTGCGGTCACCAGAAAACCCTAA CAATGGGTAAATGTTCATGTTTCTGGTTCTACCCGGTGCACTGTCTTCTC AACTCTGCCATAGAGGCGGAGAAATGAATCGTTCGTCGTGAACAAATATG CTAACATGAGCTCGGCTTTTGTTTTTGTTAAGGATGGAGAGTGCGGGAGG CCTGATTCGATCATCGCAGCAGAGTCGTGGGAGATGTTCGGCATGAGGGA CAAGAGCGTCCTCGTGGAGAGTCTGTACGGCCAGTTCAAGAGCACGCTCG AATGCCAGCAGTGCGGCAAGGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20049:1873..3098-

>mRNA_Ecto-sp13_S_contig20049.6542.1 ID=mRNA_Ecto-sp13_S_contig20049.6542.1|Name=mRNA_Ecto-sp13_S_contig20049.6542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20049:1873..3098- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCCTGGCCCGCGGCAGGAGCTGTGGTTCGGCAGTGGGAGCTCGGTATC
CCCCTCAGGCCTCAAGAGCGCCATTGCGAAGTTCGCCCCGCAGTTCAACG
GCTACTCGCAGCAGGACTCACAGGAGGTCCTGTCCTTCCTCCTGGACGGA
CTGCACGAGGACCTCAACAGAGTGCCGAAGAAGCCCTACCTCACGCTCCC
GGATGGAGAGTGCGGGAGGCCTGATTCGATCATCGCAGCAGAGTCGTGGG
AGATGTTCGGCATGAGGGACAAGAGCGTCCTCGTGGAGAGTCTGTACGGC
CAGTTCAAGAGCACGCTCGAATGCCAGCAGTGCGGCAAGGTATGA
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