mRNA_Ecto-sp13_S_contig20039.6539.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: D7FJ26_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ26_ECTSI) HSP 1 Score: 237 bits (604), Expect = 4.250e-74 Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 1
Query: 1 QRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
QRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDY AGIYLVLKGMQVSFR DRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRM+RPLLLPCNHLFCGECVAEW
Sbjct: 364 QRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLKGMQVSFRADRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEW 475
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A6H5L8S9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S9_9PHAE) HSP 1 Score: 236 bits (601), Expect = 1.930e-71 Identity = 107/111 (96.40%), Postives = 111/111 (100.00%), Query Frame = 1
Query: 4 RRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
RRVNAVVEMAFVLYRCLLPAP+WLEFYGKDSDY+AGIYL+LKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRM+RPLLLPCNHLFCGECVAEW
Sbjct: 626 RRVNAVVEMAFVLYRCLLPAPIWLEFYGKDSDYLAGIYLLLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEW 736
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A7S3XZP7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZP7_HETAK) HSP 1 Score: 109 bits (273), Expect = 3.380e-28 Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY---GKDSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
+R+V ++E+AF++YR LP PVWL++Y G D +Y +K + R F+ R+GEL+ G AT E +AEAG PDCSIC++ + +P+ L C HLFC CV +W
Sbjct: 16 RRKVMGLMELAFLVYRTALPVPVWLQWYTCGGTAPDVFGVLYFFIKNFLIIHRFRVFLAGLSSYRKGELEYGAYATAETLAEAGHPDCSICFEALTKPVQLTCTHLFCEACVGQW 130
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A7S2XZV9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV9_9STRA) HSP 1 Score: 108 bits (271), Expect = 4.130e-28 Identity = 47/112 (41.96%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 7 RVNAVVEMAFVLYRCLLPAPVWLEFYGKDSD--YVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
++ A++EM V+YR LLP VW ++Y +S A Y+++KG+ VS R+ V A RG L+ G TP+ +AEAGSP CSIC++ M+ P++L C H++C C+ EW
Sbjct: 1 KLYALMEMTSVVYRSLLPVAVWFQYYQVNSQGQMFATFYIIMKGLLVSRRLQALVEGAMQFIRGGLEHGTFVTPDGLAEAGSPACSICFEPMSHPVMLHCRHMYCETCIEEW 112
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A7S2S9Z2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9Z2_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.210e-25 Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 1 QRRVNAVVEMAFVLYRCLLPAPVWLEFYGK--DSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
++R+ ++E+ LYR LLP P+W +Y D+ G+YL LK M S + +L+ G+LA+ +EVAEAG PDC ICYD M P+LLPC HLFC ECV EW
Sbjct: 275 KKRIYVLLELLSKLYRILLPIPMWFAYYESQDDNQVFLGVYLCLKAMVASSYLKVLFLMVKASLTTDLEIGRLASSQEVAEAGHPDCPICYDEMVSPVLLPCGHLFCEECVLEW 388
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: UPI001CB9658D (E3 ubiquitin-protein ligase RNFT1-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9658D) HSP 1 Score: 101 bits (252), Expect = 4.530e-23 Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
Q ++ +VE A +LYR LPAPVW F+ K+ S + G+YL K V +V F A + R E+ G ATPE+V+EAG C+IC ++M P+LL CNH+FC +CV+EW
Sbjct: 281 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSVVEKVGSFYSALKALSRKEMHYGSYATPEQVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEW 397
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A251TUA1_HELAN (Putative RING finger and transmembrane domain-containing protein 1 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TUA1_HELAN) HSP 1 Score: 101 bits (251), Expect = 6.890e-23 Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
Q ++ +VE A +LYR LPAPVW F+ K+ S + G+YL K V +V F A + R E+ G ATPE+V+EAG C+IC ++M P+LL CNH+FC +CV+EW
Sbjct: 294 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSVVGKVGSFYAALKALSRKEMHYGSYATPEKVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEW 410
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A2U1QL92_ARTAN (RING finger and transmembrane domain-containing protein 1 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QL92_ARTAN) HSP 1 Score: 98.2 bits (243), Expect = 9.020e-22 Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 1
Query: 1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY------GKDSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
Q ++ +VE +LYR LPAPVW F+ G S ++ G+YL K + +V F A + R E+ G AT E+V+EAG C+IC ++M P+LL CNH+FC +CV+EW
Sbjct: 292 QGQMLTLVEYGLLLYRAFLPAPVWYRFFLNKEYGGLFSSFITGLYLTFKLTSLVEKVRSFYAALKALSRKEMHYGSYATLEQVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEW 408
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A251SG25_HELAN (Putative zinc finger, RING/FYVE/PHD-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SG25_HELAN) HSP 1 Score: 98.2 bits (243), Expect = 9.300e-22 Identity = 50/118 (42.37%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
Q ++ +VE A +LYR LPAPVW F+ K+ S + G+YL K V +V F A + R E+ G AT E+V+EAG C+IC ++M P+LL CNH+FC +CV+EW
Sbjct: 297 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSVVEKVGSFYAALKALSRKEMHYGSYATSEQVSEAGDM-CAICQEKMQAPVLLCCNHIFCEDCVSEW 413
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A2J6K7G5_LACSA (RING-type domain-containing protein n=4 Tax=Asteraceae TaxID=4210 RepID=A0A2J6K7G5_LACSA) HSP 1 Score: 98.2 bits (243), Expect = 1.030e-21 Identity = 49/118 (41.53%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
Q ++ +VE A +LYR LPAPVW F+ K+ S + G+YL K + +V F A + R E+ G AT E+V+EAG C+IC ++M P+LL CNH+FC +CV+EW
Sbjct: 316 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSIVEKVGSFYAAMKALSRKEMHYGSYATSEQVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEW 432 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20039.6539.1 >prot_Ecto-sp13_S_contig20039.6539.1 ID=prot_Ecto-sp13_S_contig20039.6539.1|Name=mRNA_Ecto-sp13_S_contig20039.6539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp MAFVLYRCLLPAPVWLEFYGKDSDYVAGIYLVLKGMQVSFRVDRFVRAACback to top mRNA from alignment at Ecto-sp13_S_contig20039:464..1280- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20039.6539.1 ID=mRNA_Ecto-sp13_S_contig20039.6539.1|Name=mRNA_Ecto-sp13_S_contig20039.6539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=817bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20039:464..1280- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20039:464..1280- >mRNA_Ecto-sp13_S_contig20039.6539.1 ID=mRNA_Ecto-sp13_S_contig20039.6539.1|Name=mRNA_Ecto-sp13_S_contig20039.6539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20039:464..1280- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |