mRNA_Ecto-sp13_S_contig20039.6539.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20039.6539.1
Unique NamemRNA_Ecto-sp13_S_contig20039.6539.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: D7FJ26_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ26_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 4.250e-74
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 1
Query:    1 QRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            QRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDY AGIYLVLKGMQVSFR DRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRM+RPLLLPCNHLFCGECVAEW
Sbjct:  364 QRRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYFAGIYLVLKGMQVSFRADRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEW 475          
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A6H5L8S9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S9_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.930e-71
Identity = 107/111 (96.40%), Postives = 111/111 (100.00%), Query Frame = 1
Query:    4 RRVNAVVEMAFVLYRCLLPAPVWLEFYGKDSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            RRVNAVVEMAFVLYRCLLPAP+WLEFYGKDSDY+AGIYL+LKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRM+RPLLLPCNHLFCGECVAEW
Sbjct:  626 RRVNAVVEMAFVLYRCLLPAPIWLEFYGKDSDYLAGIYLLLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMSRPLLLPCNHLFCGECVAEW 736          
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A7S3XZP7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZP7_HETAK)

HSP 1 Score: 109 bits (273), Expect = 3.380e-28
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY---GKDSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            +R+V  ++E+AF++YR  LP PVWL++Y   G   D    +Y  +K   +  R   F+      R+GEL+ G  AT E +AEAG PDCSIC++ + +P+ L C HLFC  CV +W
Sbjct:   16 RRKVMGLMELAFLVYRTALPVPVWLQWYTCGGTAPDVFGVLYFFIKNFLIIHRFRVFLAGLSSYRKGELEYGAYATAETLAEAGHPDCSICFEALTKPVQLTCTHLFCEACVGQW 130          
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A7S2XZV9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.130e-28
Identity = 47/112 (41.96%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    7 RVNAVVEMAFVLYRCLLPAPVWLEFYGKDSD--YVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            ++ A++EM  V+YR LLP  VW ++Y  +S     A  Y+++KG+ VS R+   V  A    RG L+ G   TP+ +AEAGSP CSIC++ M+ P++L C H++C  C+ EW
Sbjct:    1 KLYALMEMTSVVYRSLLPVAVWFQYYQVNSQGQMFATFYIIMKGLLVSRRLQALVEGAMQFIRGGLEHGTFVTPDGLAEAGSPACSICFEPMSHPVMLHCRHMYCETCIEEW 112          
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A7S2S9Z2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9Z2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.210e-25
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    1 QRRVNAVVEMAFVLYRCLLPAPVWLEFYGK--DSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            ++R+  ++E+   LYR LLP P+W  +Y    D+    G+YL LK M  S  +             +L+ G+LA+ +EVAEAG PDC ICYD M  P+LLPC HLFC ECV EW
Sbjct:  275 KKRIYVLLELLSKLYRILLPIPMWFAYYESQDDNQVFLGVYLCLKAMVASSYLKVLFLMVKASLTTDLEIGRLASSQEVAEAGHPDCPICYDEMVSPVLLPCGHLFCEECVLEW 388          
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: UPI001CB9658D (E3 ubiquitin-protein ligase RNFT1-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9658D)

HSP 1 Score: 101 bits (252), Expect = 4.530e-23
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            Q ++  +VE A +LYR  LPAPVW  F+  K+     S  + G+YL  K   V  +V  F  A   + R E+  G  ATPE+V+EAG   C+IC ++M  P+LL CNH+FC +CV+EW
Sbjct:  281 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSVVEKVGSFYSALKALSRKEMHYGSYATPEQVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEW 397          
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A251TUA1_HELAN (Putative RING finger and transmembrane domain-containing protein 1 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TUA1_HELAN)

HSP 1 Score: 101 bits (251), Expect = 6.890e-23
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            Q ++  +VE A +LYR  LPAPVW  F+  K+     S  + G+YL  K   V  +V  F  A   + R E+  G  ATPE+V+EAG   C+IC ++M  P+LL CNH+FC +CV+EW
Sbjct:  294 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSVVGKVGSFYAALKALSRKEMHYGSYATPEKVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEW 410          
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A2U1QL92_ARTAN (RING finger and transmembrane domain-containing protein 1 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QL92_ARTAN)

HSP 1 Score: 98.2 bits (243), Expect = 9.020e-22
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY------GKDSDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            Q ++  +VE   +LYR  LPAPVW  F+      G  S ++ G+YL  K   +  +V  F  A   + R E+  G  AT E+V+EAG   C+IC ++M  P+LL CNH+FC +CV+EW
Sbjct:  292 QGQMLTLVEYGLLLYRAFLPAPVWYRFFLNKEYGGLFSSFITGLYLTFKLTSLVEKVRSFYAALKALSRKEMHYGSYATLEQVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEW 408          
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A251SG25_HELAN (Putative zinc finger, RING/FYVE/PHD-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SG25_HELAN)

HSP 1 Score: 98.2 bits (243), Expect = 9.300e-22
Identity = 50/118 (42.37%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            Q ++  +VE A +LYR  LPAPVW  F+  K+     S  + G+YL  K   V  +V  F  A   + R E+  G  AT E+V+EAG   C+IC ++M  P+LL CNH+FC +CV+EW
Sbjct:  297 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSVVEKVGSFYAALKALSRKEMHYGSYATSEQVSEAGDM-CAICQEKMQAPVLLCCNHIFCEDCVSEW 413          
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Match: A0A2J6K7G5_LACSA (RING-type domain-containing protein n=4 Tax=Asteraceae TaxID=4210 RepID=A0A2J6K7G5_LACSA)

HSP 1 Score: 98.2 bits (243), Expect = 1.030e-21
Identity = 49/118 (41.53%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 QRRVNAVVEMAFVLYRCLLPAPVWLEFY-GKD-----SDYVAGIYLVLKGMQVSFRVDRFVRAACYVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECVAEW 336
            Q ++  +VE A +LYR  LPAPVW  F+  K+     S  + G+YL  K   +  +V  F  A   + R E+  G  AT E+V+EAG   C+IC ++M  P+LL CNH+FC +CV+EW
Sbjct:  316 QGQMLTLVEYALLLYRAFLPAPVWYRFFLNKEYGSLFSSLITGLYLTFKLTSIVEKVGSFYAAMKALSRKEMHYGSYATSEQVSEAGDM-CAICQEKMQAPILLCCNHIFCEDCVSEW 432          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20039.6539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ26_ECTSI4.250e-7497.32RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L8S9_9PHAE1.930e-7196.40RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3XZP7_HETAK3.380e-2841.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZV9_9STRA4.130e-2841.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2S9Z2_9STRA1.210e-2544.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI001CB9658D4.530e-2343.22E3 ubiquitin-protein ligase RNFT1-like n=1 Tax=Eri... [more]
A0A251TUA1_HELAN6.890e-2343.22Putative RING finger and transmembrane domain-cont... [more]
A0A2U1QL92_ARTAN9.020e-2240.68RING finger and transmembrane domain-containing pr... [more]
A0A251SG25_HELAN9.300e-2242.37Putative zinc finger, RING/FYVE/PHD-type n=2 Tax=H... [more]
A0A2J6K7G5_LACSA1.030e-2141.53RING-type domain-containing protein n=4 Tax=Astera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20039contigEcto-sp13_S_contig20039:464..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score221.1
Seed ortholog evalue2.4e-55
Seed eggNOG ortholog2880.D7FJ26
Model size339
KEGG koko:K22379
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
Exons3
EggNOG free text desc.protein polyubiquitination
EggNOG OGsCOG5243@1,KOG0802@2759
EC2.3.2.27
Cds size312
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.5258422-CDS-Ecto-sp13_S_contig20039:463..6041681463008.5258422-CDS-Ecto-sp13_S_contig20039:463..604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20039 464..604 -
1681463008.536012-CDS-Ecto-sp13_S_contig20039:783..8521681463008.536012-CDS-Ecto-sp13_S_contig20039:783..852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20039 784..852 -
1681463008.5446334-CDS-Ecto-sp13_S_contig20039:1151..12531681463008.5446334-CDS-Ecto-sp13_S_contig20039:1151..1253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20039 1152..1253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.5536673-UTR-Ecto-sp13_S_contig20039:1253..12801681463008.5536673-UTR-Ecto-sp13_S_contig20039:1253..1280Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20039 1254..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20039.6539.1prot_Ecto-sp13_S_contig20039.6539.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20039 464..1253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20039.6539.1

>prot_Ecto-sp13_S_contig20039.6539.1 ID=prot_Ecto-sp13_S_contig20039.6539.1|Name=mRNA_Ecto-sp13_S_contig20039.6539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MAFVLYRCLLPAPVWLEFYGKDSDYVAGIYLVLKGMQVSFRVDRFVRAAC
YVRRGELDRGKLATPEEVAEAGSPDCSICYDRMNRPLLLPCNHLFCGECV
AEW*
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mRNA from alignment at Ecto-sp13_S_contig20039:464..1280-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20039.6539.1 ID=mRNA_Ecto-sp13_S_contig20039.6539.1|Name=mRNA_Ecto-sp13_S_contig20039.6539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=817bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20039:464..1280- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGAAGGGTGAACGCGGTCGTGGAGATGGCGTTCGTGCTCTACCGGTG CCTTTTGCCGGCACCTGTCTGGCTGGAGTTTTACGGCAAGGACAGCGACT ACGTCGCAGGGATTTATCTCGTCCTCAAGGTGATCCTTCTCCCTGCCGCT TCCCCCTGCTAGGCGCGTTGCTGTTCTATGACGGGCCGTCATGCATGCTT TGCTCGCTTGCCGTCTAGCCTGTTTCGCTACCCTCAAGAGGACGACTATT GCAAGGGCTCTTTGGCGAGGGGGAAGCCGAACAACCCTTTCCGTGGAGTG TTTGGTCTTGCAGATGGTAAACCAACGCCAACGCTTCTGACCTTTTTTTG AACCCGCTCACGTGCTCTGTCCTTCTTGCTGTATCGCCGTGATGTATATC CTCTGCCCGCGGCTCGATTACCGAAAAGGGGATGCAAGTCTCGTTTCGTG TAGATCGGTTCGTCAGGGCGGCGTGCTACGTGCGAAGGGGGGAACTGGTG AGCGGCATACAAAAAGTGACATACGTACCATTTGTTCGGCTCGACGAAGC ACACACGCACATATGTCATCGCCGCCGTGGCTCCGGCATTGCCGCCTTCT ACCCCCCCTGTGTTCGCTTTCGGTGCATTGGTCCACCTTTCCGTAATTTC TCGTTCGTTTGTTTTCGGGTGATTAGGACCGAGGGAAGTTGGCCACGCCG GAAGAGGTAGCCGAGGCCGGGTCGCCGGACTGTTCCATCTGCTACGACCG GATGAACCGGCCGCTGCTGCTTCCATGCAACCACCTCTTCTGTGGGGAGT GCGTGGCCGAGTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20039:464..1280-

>mRNA_Ecto-sp13_S_contig20039.6539.1 ID=mRNA_Ecto-sp13_S_contig20039.6539.1|Name=mRNA_Ecto-sp13_S_contig20039.6539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20039:464..1280- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTTCGTGCTCTACCGGTGCCTTTTGCCGGCACCTGTCTGGCTGGA
GTTTTACGGCAAGGACAGCGACTACGTCGCAGGGATTTATCTCGTCCTCA
AGGGGATGCAAGTCTCGTTTCGTGTAGATCGGTTCGTCAGGGCGGCGTGC
TACGTGCGAAGGGGGGAACTGGACCGAGGGAAGTTGGCCACGCCGGAAGA
GGTAGCCGAGGCCGGGTCGCCGGACTGTTCCATCTGCTACGACCGGATGA
ACCGGCCGCTGCTGCTTCCATGCAACCACCTCTTCTGTGGGGAGTGCGTG
GCCGAGTGGTGA
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