mRNA_Ecto-sp13_S_contig2003.6535.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig2003.6535.1
Unique NamemRNA_Ecto-sp13_S_contig2003.6535.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: D8LHS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHS7_ECTSI)

HSP 1 Score: 622 bits (1603), Expect = 2.730e-218
Identity = 325/362 (89.78%), Postives = 338/362 (93.37%), Query Frame = 2
Query:  371 MGNLLYSPLRGHPIPPSAFSALVPRGLPAFVSSSVQGPPAPLLLNPASTCKSPPRHRRPIWSSVSRGGCGGVGRGFSRRRKHLHRASADQSLLLCSLTTEASDHVASPCPENPRSPRQDRDSRGDAIAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGVEAMRRGVEACLLPSSPPQQTPKERKTELEERNER 1456
            MGNLLYSPLRGH  PPSAFSALVPRGLPAFVSSS Q PPA LLL+PASTCKSPPRHR PI SSVS GGCGGVGR F+RRRKHLHRASADQSLLLCSLTTEAS     PCPEN RSPRQDRDSRGDAIAQATLRWIRSTV+GLNLCPWAAGALVGG LRVLVHPAQQP PAATD+QERLPGSDV GGVS+DSG+SSDAADLLEG V+VA  EAV L+ALGGEAAANATTLVVARPPLAQGF+EFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAV+QISDPA VWERN+DTTRKLGVEAMRRGVEACL+PSSPPQQTPKE KT+LEERNER
Sbjct:    1 MGNLLYSPLRGHATPPSAFSALVPRGLPAFVSSSSQVPPALLLLHPASTCKSPPRHRPPIRSSVSCGGCGGVGREFARRRKHLHRASADQSLLLCSLTTEASR----PCPENTRSPRQDRDSRGDAIAQATLRWIRSTVIGLNLCPWAAGALVGGQLRVLVHPAQQPLPAATDYQERLPGSDVGGGVSKDSGASSDAADLLEGLVEVATGEAVALSALGGEAAANATTLVVARPPLAQGFEEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVEQISDPAKVWERNVDTTRKLGVEAMRRGVEACLVPSSPPQQTPKEAKTDLEERNER 358          
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: A0A1W1X5E7_9NEIS (Uncharacterized protein n=1 Tax=Andreprevotia lacus DSM 23236 TaxID=1121001 RepID=A0A1W1X5E7_9NEIS)

HSP 1 Score: 127 bits (320), Expect = 2.290e-30
Identity = 74/204 (36.27%), Postives = 105/204 (51.47%), Query Frame = 2
Query:  743 DAIAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGV 1354
            D +  AT  W+   V+GLNLCP+A    V   +R++V  A+                                   L+GF++   RE   L  +  + A   TTL++  P L   F  F  V G  +E ++E GL G +Q+A+FHPQ++FEG+E D+ SNYTNR+PYP LHLL ED ++ A     D A ++ERNI+   KLGV
Sbjct:    4 DDVIAATRLWLEKAVIGLNLCPFAKAVYVKNQVRIVVSEARH----------------------------------LDGFLEDLDRELDYL--VAADPAETDTTLLI-HPTLLADFLVFNDVTGIAEEAVEEHGLEGVIQIASFHPQFQFEGTEPDEISNYTNRAPYPTLHLLREDSIARAAAAFPDAAAIFERNIEVLEKLGV 170          
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: A0A1E2UMS8_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Thiodiazotropha endoloripes TaxID=1818881 RepID=A0A1E2UMS8_9GAMM)

HSP 1 Score: 127 bits (318), Expect = 4.670e-30
Identity = 74/214 (34.58%), Postives = 111/214 (51.87%), Query Frame = 2
Query:  743 DAIAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGVEAMRRGVEAC 1384
            +AI  AT  W+  TVVGLNLCP+AA  +  G +R LV P                                     ++G  +    E  T+  L     A A+ L+V  P   + F ++L +   V+E I E+GL GK QLA+FHP Y+F+GS+E D +NYTNRSPYP+ H + E+ ++ A+K    P  + +RNI+  R++G+EA+ + +  C
Sbjct:    4 EAILAATRCWVEGTVVGLNLCPFAAVPVEAGRIRYLVCPESD----------------------------------MDGIYRAILAEFETMLQLQD---AEASLLIV--PAGLEAFDDYLDLLQVVEEVIPEAGLEGKFQLASFHPDYQFDGSDESDPANYTNRSPYPMFHFIREESLAEALKHYPQPELIPQRNIELLREMGLEAVEQRLARC 178          
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: A0A0Q6U3L2_9BURK (Uncharacterized protein n=4 Tax=Burkholderiales TaxID=80840 RepID=A0A0Q6U3L2_9BURK)

HSP 1 Score: 125 bits (314), Expect = 1.500e-29
Identity = 73/209 (34.93%), Postives = 103/209 (49.28%), Query Frame = 2
Query:  743 DAIAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGVEAMRR 1369
            + + Q T  W+   V+GLNLCP+A    V   +R +V  A +P                                  E  +K  ARE + LN    E      T +V  P +   F +F     A D  ++E  L G +Q+A FHP Y+FEGSE DD +NY+NRSPYP LH+L ED +  AV+ + D A+++E N++T  KLGVE  R+
Sbjct:    4 EQVIQDTRDWVIKAVIGLNLCPFAKAVHVNERIRYVVSDATEP----------------------------------EALLKDLARELLALNRADPE---EVDTTLVIHPNVLTDFLDFNDFLDAADALVEELKLDGILQIADFHPAYQFEGSEPDDIANYSNRSPYPTLHILREDSIERAVESMPDTASIYENNLETLDKLGVEGWRK 175          
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: A0A7S2XWH7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWH7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.240e-29
Identity = 75/214 (35.05%), Postives = 110/214 (51.40%), Query Frame = 2
Query:  749 IAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGG--EAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGVEAMRRGVEAC 1384
            + +AT+ W++  V+GLNLCPWA   L  G +R+ V   Q       DH          G V R+              V+   R+  + + LG   E    +T L V    +   F+ +L     V E ++E GL+  +Q+ATFHP Y+F    +DD  N+TNRSPYP+LH LLED+VS AV   SD   +W+RNI + +K G   M++ ++ C
Sbjct:   89 VEEATMAWVKRVVIGLNLCPWAMPTLKDGKMRIQVSQGQ-------DH----------GAVLRE--------------VRRCVRKLASDHRLGQTREEGNPSTVLFVCPQKMLARFEVYLDFVEMVQEMLEEEGLQDVLQVATFHPHYQFAEHGKDDVENFTNRSPYPILHFLLEDEVSEAVDNYSDTDKIWQRNIQSMQKAGTAEMKKVLKNC 271          
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: A0A2V7YM76_9BACT (DUF1415 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7YM76_9BACT)

HSP 1 Score: 124 bits (312), Expect = 3.150e-29
Identity = 74/209 (35.41%), Postives = 108/209 (51.67%), Query Frame = 2
Query:  743 DAIAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGVEAMRR 1369
            + I +AT +W+   V+GLNLCP+A        +R +V  A+ P       +E L                   ADL++    +AA E   +           TTL++  P +   F ++    G  ++ +   GL G +Q+A+FHP Y+F G+E DD +NYTNRSPYP LHLL E  V  AV  + D A ++ERN++T R+LGVE  RR
Sbjct:    6 EEIVKATRQWLEKAVIGLNLCPFAKPVHARDQIRYVVSQAETP-------EELL-------------------ADLIDELQTLAAAEPEEIE----------TTLLI-HPRVLNDFLDYNDFLGVAEDTVAGLGLEGVLQVASFHPDYQFAGTEPDDVTNYTNRSPYPTLHLLREASVERAVAAVPDAAEIYERNMETLRRLGVEGWRR 177          
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: UPI00055108BC (DUF1415 domain-containing protein n=1 Tax=Andreprevotia chitinilytica TaxID=396808 RepID=UPI00055108BC)

HSP 1 Score: 124 bits (310), Expect = 5.570e-29
Identity = 72/206 (34.95%), Postives = 105/206 (50.97%), Query Frame = 2
Query:  737 RGDAIAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGV 1354
            R + I   T +W+   V+GLNLCP+A    V   +R++V  A+                                   L+GF++   RE   L+ L     A   T ++  P L   F  F  V G  +E + E  L G +Q+A+FHPQ++F+G+E DD SNYTNRSPYP LHLL E  ++ AV+   D + ++ERNI+T +KLG+
Sbjct:    2 RQEDILSVTRQWLEKAVIGLNLCPFAKSVYVKNQVRIVVSEARH----------------------------------LDGFLEDLDRE---LDLLAATDPAEIDTTLLIHPSLFDDFLIFNDVTGIAEEAVAEHELEGVIQVASFHPQFQFDGTEPDDISNYTNRSPYPTLHLLREASIARAVEAFPDASAIFERNIETLQKLGL 170          
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: UPI0015660F00 (DUF1415 domain-containing protein n=1 Tax=Paraburkholderia sp. NMBU_R16 TaxID=2698676 RepID=UPI0015660F00)

HSP 1 Score: 124 bits (310), Expect = 6.240e-29
Identity = 75/209 (35.89%), Postives = 102/209 (48.80%), Query Frame = 2
Query:  743 DAIAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGVEAMRR 1369
            +A+  AT  W+   V+GLNLCP+A      G +R +V                                 SDA D+     ++ A     L  L     A   T ++  P     F EF       +  +D+ GL+G +Q+A+FHP YRFEGSE +D  NYTNR+PYP+LHLL E  V+ AV    D A+V+ERNI+T R+LG E  RR
Sbjct:    9 EAVVAATQHWLVRAVIGLNLCPFAKAVHAKGQIRYVV---------------------------------SDARDMEGALTELEAE----LKWLAEADPAQVDTTLLILPHALGAFLEFNDCVFFAERLVDQLGLQGMLQIASFHPDYRFEGSEPEDIENYTNRAPYPILHLLREASVTRAVDAFPDAADVYERNIETMRRLGHECWRR 180          
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: A0A831W436_9GAMM (DUF1415 domain-containing protein n=1 Tax=Sedimenticola thiotaurini TaxID=1543721 RepID=A0A831W436_9GAMM)

HSP 1 Score: 124 bits (310), Expect = 8.230e-29
Identity = 76/214 (35.51%), Postives = 106/214 (49.53%), Query Frame = 2
Query:  746 AIAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGVEAMRRGVEACL 1387
            AI  AT RWIR  V+GLNLCP+AA  +    +R LV P ++P                                  E   +    E      L  E       +V   P   + F ++L +  + ++ I E+GL G +QLA+FHP Y FEG+ EDD +NYTNRSPYP+ HL+  + ++ AV +  DP  + ERNI T R+LG+  MRR +E  L
Sbjct:    6 AIVAATRRWIREVVIGLNLCPFAAAPMERETIRYLVCPERRP----------------------------------EAIYRALLAEMEVFVQLPEEQVETGLFIV---PAGLESFDDYLDLLYSAEQAIPEAGLEGVLQLASFHPDYLFEGAPEDDPANYTNRSPYPMFHLIRSEGLARAVARYPDPEQIPERNIRTLRELGLAEMRRRLERVL 182          
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Match: A0A7S0DXV1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DXV1_9CRYP)

HSP 1 Score: 125 bits (315), Expect = 8.940e-29
Identity = 72/218 (33.03%), Postives = 108/218 (49.54%), Query Frame = 2
Query:  731 DSRGDAIAQATLRWIRSTVVGLNLCPWAAGALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADLLEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAVDEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLEDQVSAAVKQISDPANVWERNIDTTRKLGVEAMRRGVEAC 1384
            D R   ++++T+ WI+S V+GLNLCPWA  AL  G + + V  A    P A      + G+                   +E       RE                T ++    L   F ++  +A  +D  ID+   RG +QLATFHPQY+F  +EEDD  N+TNRSPYP+ HLL E ++  A++   DP  VW+RN+ T ++ G   M++ ++ C
Sbjct:   79 DQRRAMVSESTMSWIKSAVIGLNLCPWAKSALKEGLIDIKVSDA----PDANSLMNEVVGN-------------------IEEMADSEGRE----------------TRIIVTECLLANFADYNKIANTIDRKIDQMDCRGIIQLATFHPQYQFADAEEDDVENWTNRSPYPMFHLLREIEIEEALEDYDDPDEVWQRNMRTVKEKGKCFMQQLLDRC 257          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig2003.6535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHS7_ECTSI2.730e-21889.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1W1X5E7_9NEIS2.290e-3036.27Uncharacterized protein n=1 Tax=Andreprevotia lacu... [more]
A0A1E2UMS8_9GAMM4.670e-3034.58Uncharacterized protein n=1 Tax=Candidatus Thiodia... [more]
A0A0Q6U3L2_9BURK1.500e-2934.93Uncharacterized protein n=4 Tax=Burkholderiales Ta... [more]
A0A7S2XWH7_9STRA2.240e-2935.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2V7YM76_9BACT3.150e-2935.41DUF1415 domain-containing protein n=1 Tax=Acidobac... [more]
UPI00055108BC5.570e-2934.95DUF1415 domain-containing protein n=1 Tax=Andrepre... [more]
UPI0015660F006.240e-2935.89DUF1415 domain-containing protein n=1 Tax=Paraburk... [more]
A0A831W436_9GAMM8.230e-2935.51DUF1415 domain-containing protein n=1 Tax=Sediment... [more]
A0A7S0DXV1_9CRYP8.940e-2933.03Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig2003contigEcto-sp13_S_contig2003:767..5348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score627.9
Seed ortholog evalue3e-177
Seed eggNOG ortholog2880.D8LHS7
Model size2026
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Protein of unknown function (DUF1415)
EggNOG OGs2SA80@2759,COG3310@1
Ec32 ortholog descriptionProtein of unknown function DUF1415
Ec32 orthologEc-18_000300.1
Cds size1089
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig2003.6535.1prot_Ecto-sp13_S_contig2003.6535.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig2003 1334..4978 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.254033-UTR-Ecto-sp13_S_contig2003:766..13331681463008.254033-UTR-Ecto-sp13_S_contig2003:766..1333Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2003 767..1333 -
1681463008.3123233-UTR-Ecto-sp13_S_contig2003:4978..53481681463008.3123233-UTR-Ecto-sp13_S_contig2003:4978..5348Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig2003 4979..5348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463008.2706041-CDS-Ecto-sp13_S_contig2003:1333..15191681463008.2706041-CDS-Ecto-sp13_S_contig2003:1333..1519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2003 1334..1519 -
1681463008.2785332-CDS-Ecto-sp13_S_contig2003:2713..28241681463008.2785332-CDS-Ecto-sp13_S_contig2003:2713..2824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2003 2714..2824 -
1681463008.2864563-CDS-Ecto-sp13_S_contig2003:3705..41971681463008.2864563-CDS-Ecto-sp13_S_contig2003:3705..4197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2003 3706..4197 -
1681463008.2967873-CDS-Ecto-sp13_S_contig2003:4678..49781681463008.2967873-CDS-Ecto-sp13_S_contig2003:4678..4978Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig2003 4679..4978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig2003.6535.1

>prot_Ecto-sp13_S_contig2003.6535.1 ID=prot_Ecto-sp13_S_contig2003.6535.1|Name=mRNA_Ecto-sp13_S_contig2003.6535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=363bp
MGNLLYSPLRGHPIPPSAFSALVPRGLPAFVSSSVQGPPAPLLLNPASTC
KSPPRHRRPIWSSVSRGGCGGVGRGFSRRRKHLHRASADQSLLLCSLTTE
ASDHVASPCPENPRSPRQDRDSRGDAIAQATLRWIRSTVVGLNLCPWAAG
ALVGGHLRVLVHPAQQPPPAATDHQERLPGSDVAGGVSRDSGSSSDAADL
LEGFVKVAAREAVTLNALGGEAAANATTLVVARPPLAQGFQEFLSVAGAV
DEFIDESGLRGKVQLATFHPQYRFEGSEEDDASNYTNRSPYPVLHLLLED
QVSAAVKQISDPANVWERNIDTTRKLGVEAMRRGVEACLLPSSPPQQTPK
ERKTELEERNER*
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mRNA from alignment at Ecto-sp13_S_contig2003:767..5348-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig2003.6535.1 ID=mRNA_Ecto-sp13_S_contig2003.6535.1|Name=mRNA_Ecto-sp13_S_contig2003.6535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2003:767..5348- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTTTGATAGTGACTCGGGTGGCGTTCCTTCAGGGAGTTGGTGCTACAT GCATCGACACTGCTGCTCCCATTCAGGCCAATAATGGCTGGCGGCTGAGG GCCGTACGCCTGCGTATCAGGCTCCCTCAAGGAGCACCAACGCCAGTAGA ATGAACGAACGAACATCTTGGGCGGTCTACTACCTTGCTGCTCTCTTCCG AGAAACGTCGTCAACACGACAAGTTCGAACTCCAAGTACCGAGGCTCATC ACTGGACTGTTCACGTCGCCCAACCACCAGGCTTCATCGGGAAGCTCGAC AGTGCCAACGGCGAGCGGGCATCGAGAGAGGAGATGAGGCCGACACAACT TGGCTAAAGGTACCGACGTGATGGGAAACCTCCTCTACAGCCCACTACGC GGCCACCCGATACCGCCATCGGCCTTCTCCGCCCTCGTGCCCCGAGGGCT CCCAGCTTTCGTCTCATCAAGCGTCCAGGGACCGCCGGCACCGCTGTTAC TGAATCCGGCCTCAACATGTAAGTCACCTCCTCGACATCGTCGTCCGATT TGGAGCAGTGTCTCGCGCGGAGGGTGTGGTGGAGTCGGGAGGGGATTTTC TCGCAGGAGGAAACATCTTCATCGTGCATCAGCAGACCAATCGTTGTTGC TGTGTTCACTCACCACGGAGGTGAGAAGTGTTTGCGGCCGTGGTGATCGG CCATGGCTACAGCAGTAGGTGTGTTGAGTACGTTCACCATCTCCACGACC CATGTGATCATCACGAAGGGTACTAGACCGTGGTCGCAAGTAAATTGGCA TCTTCTTATTGGTGAAGCCGTGTACTGTACGAGAGTGTATCACTTGAGGG CATACGCTGCCTTGGACCTCGGGTATCACTATCAATGTGTTGCTACTGCT GTGTGCATACATGTACGGGGTGTACTGTAGTTGAATTCGTGGGGCAAACC GAACCACAGCATTGCCGTAGCCAGGATCTTCCACACAATCGTTCATCTTC ATACCGACAAACATATTTCACCGTTTCTGACATAGGATTGCTGCCTTACT GATTTGTGATGCACCGCAAGCGTGCTCCTCGTGCTACTCCTTTTCCATCT CCCCTACACAAACGTACCCCCGCCCTTTCCGGTTGGCTTGATTCCGATCA GGCTTCCGATCACGTTGCCAGCCCGTGCCCAGAAAATCCACGTTCTCCGC GGCAAGACAGGGACAGCCGTGGCGACGCCATAGCGCAGGCCACTCTGCGC TGGATCCGCTCCACCGTAGTAGGGCTAAACCTCTGCCCGTGGGCAGCCGG CGCCCTTGTAGGCGGACATTTGCGAGTCCTTGTACACCCGGCGCAGCAGC CTCCGCCAGCCGCTACCGACCACCAAGAACGCCTCCCTGGCAGTGATGTC GCCGGCGGCGTGAGCAGGGACTCCGGCTCAAGCAGCGATGCGGCCGATCT GTTGGAGGGCTTCGTGAAGGTGGCCGCGCGAGAGGCGGTGACACTGAACG CCCTGGGCGGGGAGGCCGCCGCCAACGCCACGACGCTGGTCGTAGCGAGG CCGCCGCTAGCCCAAGGCTTTCAGGAGTTTCTTTCGGTGGCCGGGGCCGT GGACGAATTCATTGACGAATCGGGTTTGCGGGGCAAGGTCCAGGTGAAGG ATGGGCGGTTTTTTTTTTCCTCCCCGTCCATGTGCTTTCTATGCAGTACA CATCGCGTGTGCCGTGTGTTCCATGTGTTGATCGGCCTGTTTCTTCATGA AAACGGATGGGGCCAAGGCGGTGTTTAGCTGGCACAATTTGGTGTCATCG CCGGCTGTGCTTGTGCTCTCGATCTACTGTACTTCTATCTAAGTTCTCAT CTGAGTTGTTTCGTAAACGACCGCTCCACCGGTAGCGATGACCCCCTTGC TCCCACGGGAAGAGCGCATCCGTGCCTACCATAAGCTTTTTGTGGGGGCC AACATATGAAGCACGTACCAATACCACAACGTACATCTTCCCGCCTTGAC TGCCCGTAGTAGCACATGCCTGTTTCTGCTTTTCCGAATTCCTGGAGCAC TTCTTGTTCGAATGATTTGGGGGTTACAAGCGCTTGGTACGGGGTAGTCA CGCTCGTCCTCGATATCCTTGTCTTGGGCGTTTCGCTTCCATCCTCACTA GTCATACACTTCCTGTATGTCGCCCTCCAACCCGACTACCATATTTTTCG CTGTCTATACGACACAACGAGTTTTTTACCCGAAACTTCCATTCTAGAAG CACTTGACGGGTTGCTGCGCATAGTAGCCTCTCGTAGGACTGAAGTGAGC CGTGTATCCTACCATAGCTTTGTTCCAGAATGGAGTTGGCCCCTGCTAGA TCTAGTAAATAGAACAGCGCAAGACAAAAGGTCAAGTGTGGGCAGCCGTG TCCTTCTTGCCGAACCCATCGTGTGACAGCTTCATTGTGCTGCGATCCAC AACTGCGCGTACCCCATCCCCCTCGCCACCATTTTTTGTTTGCAATCGTG TGGGACGCCTCCACGTACATGAAGCTGGCGACGTTTCACCCTCAGTACCG GTTCGAGGGCTCTGAGGAGGATGACGCGTCCAACTACACAAATCGATCCC CCTACCCCGTGCTGCACCTGCTGCTGGAAGATCAGGTACGGGTGGTTCCC CTCCCCACGTGACGCAAACCCCTCTTTAGCCTTGTTCTAGCGGTTGGTCG CGCGGGTGTCAGAAGTCGTGTATTCTGTGTTGATTTTTGTGTGTGTGCGG ATAAGCTCGTGGGGTAATATTTACTGCAGAAGAGAGAAAAAAAGTCCTAC GAGTACGCAATCATGTGAGCTGTACGAGGGGAGGTGCCCGGTGGAGGGCG GAAAGCTACAAGGACTAGCCGTGGACACATCTGGTTCGTGTAAACACACC CTGTCCTTGACGATACCGCGCGGATGGTGCCACGAGCAAGGGGTCAAATC GATAGTTTTTCTAATTTTGGGCACGACACACGGGGGGGGGGGCATGTCGA CCGCCCTAACGTTCTTGGGGTTGGTGCTATCATAGGGGTAAGAGCCAGCA ACCCCCTGTCTCCAGAAAGAGGCACGGAAAGGGCAAACGAGTTTCCCTCT TCCTCTGCCACGTTCACCCCCCGGTGTTTCCCTTCGGAATTGGGTTTTCG TCGCTTGGCGACGACATTGTAAAACAACCCGACCACTTCGTGAGCTCGAT AAGCAAGTTACCGGGGGGGGGTTCTTACCTTGTTTTTTTTTGCCGTAGCC GTAACGGTGATCGAGTATTGACAGATTATGTTGTGCGGGGTCGAGAACCC TCACTCTACTCGAAAGGGCATGATCGCACCACGTCGTGTTAAATTGGTCA AGCACCCTCGAGGCAGTTGCATAGTCCTGTTGACTGCCTCTGGAAGTGAA AGCACCAGAAAATGAGTAGGTCATTCGCAGCTGTCCGTACGCAAGGAAGT AAGCACAAGATGCCGAACACTCTTAGCAGGATGCAGCGCACCCTCCGCGC GGCTCGCCGAATACCTCACACCGCTGCGCGCTTGGTGATGTGAGAGCCTG GTCAGGTGAGAACCCGGCGTGCTCCGTCCCGGCTGCGAAGGGATGTGAGG TCGATGGTCAAACAACTACGGCATGCACGACGATGAGAACCCCCCTCTGC CACACTTTTGCGGCTGCCCCCCGACACCCTCATTTACTCCAGGAGCCTTC TAAGCGCGTGAAAATTTTATTTTTCGGTACATCAGAGGTAGGTTCTCGAT AAATCGCGTCAGCCCGTGTGTCCCTCCCCCCCTCGCCCGCCCTCATGTTT TGCGAAATTCCACACTTCTTGACGCACAGGTGTCCGCGGCGGTCAAGCAG ATCAGCGACCCGGCTAATGTGTGGGAGAGGAACATCGACACCACGAGGAA GCTTGGCGTTGAAGCCATGCGTCGTGGGGTAGAGGCGTGCCTTTTGCCCT CCTCGCCACCGCAGCAGACGCCGAAGGAACGGAAAACAGAGCTGGAAGAG AGGAACGAGCGATGATGGCGTTCTTTTGCGATTGCGTCCCCAAAACTGAA AGAAAAAATAACTGAAAAAAAACGCACCCGACCCTAGGTCCACCACATTT TTCTCTGTGCATGTGTGGCGGATCCGTTGCACGTCGGGCTTTACCCCATG AGGGGAGGCAAGTCGTCGCTGCTGTAGACTGTTGGTGGATGGAGTGGGCA GGCAGATCGCCCGCCCTTTCGACTCGCCGCGACGTACATAGGCCTTGGCC CCTAATATGCTGGTGGCAAGAGGGTGCCTTATAAGACGGAGCTCCGATGT GAAAGGGTTCGGGTCGATTGCGCGGACTCGACCCGCTTAGCATACGCAGT TGAGGTACCCTCTTTTTCCCGTACAAGAGGGGTCTCCGATACAAGACGGT CGAATCGAAGGCGTTCGTCACACCATCCTCTTATCTCGAAGCCACGCTGC GATAGAATGCTGTGAAACAGGGCTGCTGGATAAAGTCGGCCCCTAGCTCT TTCGTAACCAGTGGTGCACAGTTTGATGCATACATGTAGGCTATGTGCCC CAACGAACTCCACGGCGTGCCTGGAATTTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig2003:767..5348-

>mRNA_Ecto-sp13_S_contig2003.6535.1 ID=mRNA_Ecto-sp13_S_contig2003.6535.1|Name=mRNA_Ecto-sp13_S_contig2003.6535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig2003:767..5348- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAAACCTCCTCTACAGCCCACTACGCGGCCACCCGATACCGCCATC
GGCCTTCTCCGCCCTCGTGCCCCGAGGGCTCCCAGCTTTCGTCTCATCAA
GCGTCCAGGGACCGCCGGCACCGCTGTTACTGAATCCGGCCTCAACATGT
AAGTCACCTCCTCGACATCGTCGTCCGATTTGGAGCAGTGTCTCGCGCGG
AGGGTGTGGTGGAGTCGGGAGGGGATTTTCTCGCAGGAGGAAACATCTTC
ATCGTGCATCAGCAGACCAATCGTTGTTGCTGTGTTCACTCACCACGGAG
GCTTCCGATCACGTTGCCAGCCCGTGCCCAGAAAATCCACGTTCTCCGCG
GCAAGACAGGGACAGCCGTGGCGACGCCATAGCGCAGGCCACTCTGCGCT
GGATCCGCTCCACCGTAGTAGGGCTAAACCTCTGCCCGTGGGCAGCCGGC
GCCCTTGTAGGCGGACATTTGCGAGTCCTTGTACACCCGGCGCAGCAGCC
TCCGCCAGCCGCTACCGACCACCAAGAACGCCTCCCTGGCAGTGATGTCG
CCGGCGGCGTGAGCAGGGACTCCGGCTCAAGCAGCGATGCGGCCGATCTG
TTGGAGGGCTTCGTGAAGGTGGCCGCGCGAGAGGCGGTGACACTGAACGC
CCTGGGCGGGGAGGCCGCCGCCAACGCCACGACGCTGGTCGTAGCGAGGC
CGCCGCTAGCCCAAGGCTTTCAGGAGTTTCTTTCGGTGGCCGGGGCCGTG
GACGAATTCATTGACGAATCGGGTTTGCGGGGCAAGGTCCAGCTGGCGAC
GTTTCACCCTCAGTACCGGTTCGAGGGCTCTGAGGAGGATGACGCGTCCA
ACTACACAAATCGATCCCCCTACCCCGTGCTGCACCTGCTGCTGGAAGAT
CAGGTGTCCGCGGCGGTCAAGCAGATCAGCGACCCGGCTAATGTGTGGGA
GAGGAACATCGACACCACGAGGAAGCTTGGCGTTGAAGCCATGCGTCGTG
GGGTAGAGGCGTGCCTTTTGCCCTCCTCGCCACCGCAGCAGACGCCGAAG
GAACGGAAAACAGAGCTGGAAGAGAGGAACGAGCGATGA
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