mRNA_Ecto-sp13_S_contig20012.6529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20012.6529.1
Unique NamemRNA_Ecto-sp13_S_contig20012.6529.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20012.6529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20012contigEcto-sp13_S_contig20012:2403..2894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size479
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.951852-CDS-Ecto-sp13_S_contig20012:2402..25871681463007.951852-CDS-Ecto-sp13_S_contig20012:2402..2587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20012 2403..2587 +
1681463007.9626725-CDS-Ecto-sp13_S_contig20012:2600..27481681463007.9626725-CDS-Ecto-sp13_S_contig20012:2600..2748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20012 2601..2748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.972619-UTR-Ecto-sp13_S_contig20012:2748..28941681463007.972619-UTR-Ecto-sp13_S_contig20012:2748..2894Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20012 2749..2894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20012.6529.1prot_Ecto-sp13_S_contig20012.6529.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20012 2403..2748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20012.6529.1

>prot_Ecto-sp13_S_contig20012.6529.1 ID=prot_Ecto-sp13_S_contig20012.6529.1|Name=mRNA_Ecto-sp13_S_contig20012.6529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
GQITHIIVAPVAKSHVLLCKWEQNPTSIGSGVSVSPRCRILVGDLFLESF
LPTLADCPRRDALVSHRYAEHHSVIHTRSRTVLLCAVLQFFQRREETTSN
SKPTENGSHK*
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mRNA from alignment at Ecto-sp13_S_contig20012:2403..2894+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20012.6529.1 ID=mRNA_Ecto-sp13_S_contig20012.6529.1|Name=mRNA_Ecto-sp13_S_contig20012.6529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20012:2403..2894+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCAAATCACGCACATCATTGTCGCTCCCGTCGCGAAAAGCCACGTGCT
TCTATGCAAGTGGGAACAAAATCCCACAAGTATCGGTTCTGGAGTTTCGG
TTTCACCACGCTGTAGAATTCTGGTCGGTGATCTCTTCCTCGAATCTTTT
TTACCAACCCTGGCAGACTGCCCCCGTAGAGACGCGCATCGCACAGAGGC
TAGTAAGTCACCGTTATGCGGAACACCACTCCGTGATACATACTCGAAGC
AGAACTGTCCTACTATGCGCAGTACTGCAGTTCTTTCAAAGGCGAGAAGA
GACGACAAGCAACTCGAAGCCCACAGAGAATGGTAGTCATAAATAGTATT
CCTGCCAAAGCCGCTTTGATCCTGGGTGGTGTGGAGCTCTTGTACTGCTC
GAAATAGATGGTCACAAACGCACTTCTCGGGTAGGAGGCACATGATTCTC
TGCGCATCACACTTACATTGAAAATAACTTCGTCTTCCTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20012:2403..2894+

>mRNA_Ecto-sp13_S_contig20012.6529.1 ID=mRNA_Ecto-sp13_S_contig20012.6529.1|Name=mRNA_Ecto-sp13_S_contig20012.6529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20012:2403..2894+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCAAATCACGCACATCATTGTCGCTCCCGTCGCGAAAAGCCACGTGCT
TCTATGCAAGTGGGAACAAAATCCCACAAGTATCGGTTCTGGAGTTTCGG
TTTCACCACGCTGTAGAATTCTGGTCGGTGATCTCTTCCTCGAATCTTTT
TTACCAACCCTGGCAGACTGCCCCCGTAGAGACGCGCTAGTAAGTCACCG
TTATGCGGAACACCACTCCGTGATACATACTCGAAGCAGAACTGTCCTAC
TATGCGCAGTACTGCAGTTCTTTCAAAGGCGAGAAGAGACGACAAGCAAC
TCGAAGCCCACAGAGAATGGTAGTCATAAATAG
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