mRNA_Ecto-sp13_S_contig20000.6523.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20000.6523.1
Unique NamemRNA_Ecto-sp13_S_contig20000.6523.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20000.6523.1 vs. uniprot
Match: D7G574_ECTSI (RME-8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G574_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 1.980e-95
Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 1 
Query:    1 QGVGGLVAPRTFSARFFVTRLGFMRRKCRRMMAFTSDRLFIVRVDDGKAKASYPLKSVQLAPSDKVNQGKGIILTSDIGNVRHSFKCRNRTSLLAAFAELQDAARDRPLNLLFQVIKRSKTRGDVKMTLRVGPTSLDRVDGERLQHRVSSLPLLSVEKVYLFTDDATQ 504
            QGVGGLVAPRTF+ARFFVTRLGFMRRKCRRMMAFTSDRLFIVRVDDGKAKASYPLKSVQLAPSDK   GKGIILTSDIGNVRHSFKCRNRTSLLAAFAELQDAARDRPLNLLFQVIKRSKTRGDVKMTLRVGPTSLDRVDGERLQHRVSSLPLLSVEKVYLFTDDATQ
Sbjct:   68 QGVGGLVAPRTFAARFFVTRLGFMRRKCRRMMAFTSDRLFIVRVDDGKAKASYPLKSVQLAPSDK---GKGIILTSDIGNVRHSFKCRNRTSLLAAFAELQDAARDRPLNLLFQVIKRSKTRGDVKMTLRVGPTSLDRVDGERLQHRVSSLPLLSVEKVYLFTDDATQ 232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20000.6523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G574_ECTSI1.980e-9597.62RME-8_N domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20000contigEcto-sp13_S_contig20000:1497..3198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size506
Hectar predicted targeting categorymitochondrion
Exons4
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.5734384-CDS-Ecto-sp13_S_contig20000:1496..16971681463007.5734384-CDS-Ecto-sp13_S_contig20000:1496..1697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20000 1497..1697 -
1681463007.584647-CDS-Ecto-sp13_S_contig20000:2272..23711681463007.584647-CDS-Ecto-sp13_S_contig20000:2272..2371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20000 2273..2371 -
1681463007.5934885-CDS-Ecto-sp13_S_contig20000:2623..27681681463007.5934885-CDS-Ecto-sp13_S_contig20000:2623..2768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20000 2624..2768 -
1681463007.6024854-CDS-Ecto-sp13_S_contig20000:3139..31981681463007.6024854-CDS-Ecto-sp13_S_contig20000:3139..3198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20000 3140..3198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20000.6523.1prot_Ecto-sp13_S_contig20000.6523.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20000 1497..3198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20000.6523.1

>prot_Ecto-sp13_S_contig20000.6523.1 ID=prot_Ecto-sp13_S_contig20000.6523.1|Name=mRNA_Ecto-sp13_S_contig20000.6523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
QGVGGLVAPRTFSARFFVTRLGFMRRKCRRMMAFTSDRLFIVRVDDGKAK
ASYPLKSVQLAPSDKVNQGKGIILTSDIGNVRHSFKCRNRTSLLAAFAEL
QDAARDRPLNLLFQVIKRSKTRGDVKMTLRVGPTSLDRVDGERLQHRVSS
LPLLSVEKVYLFTDDATQ
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mRNA from alignment at Ecto-sp13_S_contig20000:1497..3198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20000.6523.1 ID=mRNA_Ecto-sp13_S_contig20000.6523.1|Name=mRNA_Ecto-sp13_S_contig20000.6523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20000:1497..3198- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGGCGTCGGCGGCCTCGTGGCGCCGCGCACGTTTTCGGCGCGGTTCTT
CGTTACCAGGTGCCCATCCATGTTTCTCTATTGGAACCTCCAAGGTTTTA
CACTAGATTGATGTCGATCGCGTCCGAGTGCCCCCCCCGCTCTCCCCCTC
ATCCTGCGTGCGCGCGTAGTTTGCGCAGTGGCTGTTATCTCTAATAAACT
CCAATTTCACTCCAATTTCACTCTAATTTCAAACCCTAGTTAATCAGTGA
ACCGGTTGGACGGTCTCGCACAATGATTTGTCATCGTAGCACGAGCGGGT
GTTTACCATTCATTGCATTTGCAACATTCATAGGTTTGTCGTCTAGGTAT
CAACGTCGGGTTGACGCCTGCATCCTCAACCTCTCTCTCTCCCTTTCGCT
CTCTCGTTGTCCTGTTGTTTGTTGTCCCAGGCTTGGGTTCATGCGTCGTA
AGTGCAGGCGAATGATGGCATTCACGTCGGACCGCCTGTTCATCGTTAGG
GTAGACGACGGGAAGGCTAAGGCCAGCTACCCGCTCAAGAGCGTACAGCT
AGCCCCTTCGGACAAGGTCAACCAGGCGAGTATAAACACGAGTAACGCCC
ATCTTGCCGGTGTGCACTGCTGTATTGCTTGGGCCGCATGTTTCAGCCGC
GTGGTTTTTTCGAACACGTTTTCCGGAGGCGTTTGTTTTGGTGTATGCCC
TGGTAAAAATGCATTTGTGGGATACCAACATTTTCTTATCACGGGCGACT
TTTGGTGATCATGAGGAGAAGCGAACGTCGTGAGCGCGTGGTTTGACGTC
GTTGTTGTTGCTGTGGCGTTTTTTCAGGGAAAGGGCATCATTTTGACAAG
CGACATCGGTAACGTTCGTCACTCGTTCAAGTGCCGGAACCGCACCAGCC
TCTTGGCGGCCTTCGCCGAGCTGCAGGTGAGAGGGGTCAGAGAGCGAAAA
GGTGACGCGTGCAATCTTGTACGACAGCAGTACAACGAGAGATCCTGCCG
TTTCTCGTGCCGTTAATACCTTGCCTTGAAGAAGTGTTGAGTCTCATGCA
CCGGTTGTCACCAGTGACACCATGTGAAAAATTCCGCCCTTTATCCTCTG
CACGAAGTCGTTGAGTACGAGGCCTACACCACACCACAATTCCTTCCTTG
CGCCTTTCTCCCCGGACCTTGGCGCTCTAGTTAATATACTGCAGTCATTC
CTCGGAACATGACACAATTTTTACGGACACTCCGCCGGTGAAGGAAGCAT
TTCTGCCCAAAGGCATGATCCCCCACAGAATGTAGAACACAAAGGGGGGC
ATCAATCGTAAGGACACTTGTTTCGACGAAAAACCATGTGTGTCCTTAAC
CACGGGACAACTGTATACCCAACCGATTGCCACATTGTTGTAACAGCTTT
TTTCACCCTTGTCAGCTTCGAAACTGACGGCCCCGATTCGCCCGTGTCTG
TCCTCTATCTTCTCTCATCTCCCCTATTTTTTGCTCTCCGCCCGCGTTCA
GGATGCGGCACGGGACCGGCCTTTAAATCTCTTGTTCCAGGTGATCAAGC
GCAGCAAGACTCGAGGCGACGTCAAGATGACCTTGCGGGTGGGGCCCACT
TCGCTGGATCGCGTCGACGGGGAGCGACTGCAGCACCGGGTGTCGTCTCT
GCCCCTCCTGAGCGTGGAGAAGGTGTATCTCTTCACCGACGACGCTACGC
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20000:1497..3198-

>mRNA_Ecto-sp13_S_contig20000.6523.1 ID=mRNA_Ecto-sp13_S_contig20000.6523.1|Name=mRNA_Ecto-sp13_S_contig20000.6523.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20000:1497..3198- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGGCGTCGGCGGCCTCGTGGCGCCGCGCACGTTTTCGGCGCGGTTCTT
CGTTACCAGGCTTGGGTTCATGCGTCGTAAGTGCAGGCGAATGATGGCAT
TCACGTCGGACCGCCTGTTCATCGTTAGGGTAGACGACGGGAAGGCTAAG
GCCAGCTACCCGCTCAAGAGCGTACAGCTAGCCCCTTCGGACAAGGTCAA
CCAGGGAAAGGGCATCATTTTGACAAGCGACATCGGTAACGTTCGTCACT
CGTTCAAGTGCCGGAACCGCACCAGCCTCTTGGCGGCCTTCGCCGAGCTG
CAGGATGCGGCACGGGACCGGCCTTTAAATCTCTTGTTCCAGGTGATCAA
GCGCAGCAAGACTCGAGGCGACGTCAAGATGACCTTGCGGGTGGGGCCCA
CTTCGCTGGATCGCGTCGACGGGGAGCGACTGCAGCACCGGGTGTCGTCT
CTGCCCCTCCTGAGCGTGGAGAAGGTGTATCTCTTCACCGACGACGCTAC
GCAG
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