mRNA_Ecto-sp13_S_contig19995.6504.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7FRV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV1_ECTSI) HSP 1 Score: 441 bits (1134), Expect = 7.790e-145 Identity = 231/247 (93.52%), Postives = 235/247 (95.14%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C ICT +YGRTMAFECTKCSSGEGVAVGVIFVSALAV GAA VAYLVSNEREG X LIV VKDKVSFRS+KIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFD+GWVISAGCVVDFDFHDHLLTATIGPIIVVGVL ATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLAD NSYLRADYSIQCSSTKH+ALQIFAVFMVLLYPVGIPLFYGILLY TRE
Sbjct: 633 CAICTENYGRTMAFECTKCSSGEGVAVGVIFVSALAVGGAALVAYLVSNEREGXXXXXLIVLVKDKVSFRSLKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDIGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLGATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADSNSYLRADYSIQCSSTKHRALQIFAVFMVLLYPVGIPLFYGILLYNTRE 879
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 260 bits (665), Expect = 6.370e-76 Identity = 135/249 (54.22%), Postives = 179/249 (71.89%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAGAAFVA--YLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C++C+ Y ++AF CT+C G + ++ V + V GAA +LVS E EG G+I RV ++ +S+KIVVVVWQILTQFS VANVTYP +YQRFLD +++LNFDV W+ SAGC+V+ DFH LL ATIGP++ + +L+ TY A R+ GS+ A+ ++ KH+S VLL+TFLVYSSVS+TVF+ F C+ L D YLRADY I+C S++HQA Q+FA M+L+YPVGIPLFYG LLYK R
Sbjct: 1364 CSVCSEGYSMSLAFTCTECVDDHG-GIAIMVVVGVFVLGAAIALCMHLVSGEMEGA-RRGVIHRVVKRLPLQSIKIVVVVWQILTQFSSVANVTYPDVYQRFLDGVNILNFDVLWIPSAGCLVEVDFHGRLLVATIGPLVALALLAITYTVAKRRSSGSEAALQKIRHKHMSMVLLITFLVYSSVSATVFQSFACEDLDDHKKYLRADYRIECDSSEHQAFQVFAGIMILVYPVGIPLFYGYLLYKHRR 1610
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 249 bits (637), Expect = 2.710e-72 Identity = 124/248 (50.00%), Postives = 172/248 (69.35%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCSSGEG-VAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C +C+ Y +AF CT+CS G G +A+ + + A +Y +S R G G++ R+ + +SVKIV+V WQILTQF+ VANVTYP +Y+RFLD +DV NFD+ WV+SAGC+ D DFHD LL +T+ P+I + L+ TYAAA NRG E++ ++ KHVS VLL+TFL+YSSVS+T+F+ FVC+ L DG +YLRADY+I C S+KH+A Q++A FMV++Y VGIP Y LL++ R
Sbjct: 845 CAVCSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSG-RVGDVRSGVVARLGQYIPLQSVKIVIVAWQILTQFTSVANVTYPDVYKRFLDGLDVFNFDLSWVLSAGCIFDIDFHDRLLASTVSPVIGLLFLAGTYAAAVSMNRGKAESLQVIWNKHVSLVLLLTFLIYSSVSATLFKAFVCEELEDGTNYLRADYTIDCDSSKHKAFQVYAGFMVVVYVVGIPALYAFLLFRDRH 1091
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 248 bits (634), Expect = 9.150e-72 Identity = 132/251 (52.59%), Postives = 170/251 (67.73%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAG----AAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C IC+ Y M+F C CS G G+ +ALAV G A V+Y+ S ER G G G ++ RV + +SVKIVVV WQI+TQF++VANVTYPH+YQ FL+ ++V NFD+ W++SAGCVVD DFHD LL ATIGPI +L TYAAA +RG+ E + V KHV VLL+TF VYSSVS+T+FR F C+ L DG +YL ADY I+C S+KH+ +++A FMVLLY GIP Y LL++ R+
Sbjct: 1200 CAICSEGYSAQMSFTCRTCSDNAG---GIALAAALAVVGLVLLVAVVSYVSSGERNGKGRG-IVERVGRYIPLQSVKIVVVAWQIMTQFTNVANVTYPHVYQNFLNGLEVFNFDLSWMLSAGCVVDVDFHDRLLMATIGPIFAALLLVCTYAAAVRIHRGATETLENVRHKHVFMVLLLTFFVYSSVSATLFRTFACETLEDGKTYLLADYRIECDSSKHKRFEVYAGFMVLLYTAGIPALYSFLLFRDRD 1446
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 246 bits (629), Expect = 4.200e-71 Identity = 125/249 (50.20%), Postives = 173/249 (69.48%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCS--SGEGVAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C IC+ Y ++F C+KCS S G+AV V+ + A V+Y+ S E G GG++ V + +S+KIV+V WQILTQF+ VANVTYP +YQ LDV+DV NFD+ W++SAGCVVD +FH LL +TI PI+ + +L+ TYAAA+ NRG E + ++ KHV+ VLL+TF VYSSVSST+FR F CD L YLRADYSI+C+S++H+ +Q++A FM+++Y VGIP Y LL+K+R+
Sbjct: 1099 CGICSDGYTEQLSFACSKCSENSAGGIAVAVVLALLIVFLAVAVVSYVTSGEVGMGRKGGIVELVTRYIPLQSLKIVIVSWQILTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNFHGRLLVSTISPIVALLLLACTYAAAARINRGEPEKLNIIWNKHVTVVLLLTFFVYSSVSSTLFRAFACDDLDYSKDYLRADYSIECNSSEHRGIQVYAGFMIVIYTVGIPALYAELLFKSRD 1347
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 245 bits (626), Expect = 1.110e-70 Identity = 131/251 (52.19%), Postives = 177/251 (70.52%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAG----AAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C+IC+ Y ++F+C++CS G G+I S LAV A V+Y+VS+ + G G G + R+ + +S KIVVV WQILTQF+ VANVTYP +YQRFLD + V NFD+ WV+SAGC+V DFHD LL +TIGPI+ + L TYAAA+ NRG+ E + ++ +HVS VLL+T VYSSVSST+F+ F C+ LADG +YLRADY I C S+KH+ALQ++A MV++Y VGIP YG+LL++ R+
Sbjct: 1656 CSICSDGYTAGLSFKCSECSDSAG---GIILASFLAVVALLVAVAVVSYVVSD-KVGEGSRGTVERLGRYIPLQSAKIVVVSWQILTQFTAVANVTYPDVYQRFLDGLGVFNFDLSWVLSAGCIVVVDFHDRLLISTIGPIVALLFLCWTYAAATRINRGATETLQVIWNRHVSMVLLLTVFVYSSVSSTLFQTFACESLADGETYLRADYRITCDSSKHKALQVYAGVMVVVYTVGIPALYGVLLFRDRD 1902
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 243 bits (620), Expect = 6.260e-70 Identity = 127/252 (50.40%), Postives = 173/252 (68.65%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAG----AAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGS-DEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C +C+ + F C +CS G G++ ALAVAG V+Y+ S +R G G G ++ RV + +SVKIVVV WQ++TQF+ VAN+TYP +YQ FLD + + NFD+GW++SAGCV D DFHD LL +TIGPII V VL+ TYAAA+ +RG+ D + V+ KHV VLL++F VYSSVSST+FR F C+ L DG +YLRADY I+C S++H+ +++A M+L+Y VGIP YG LLY+ R+
Sbjct: 1009 CAVCSHGFSAQFGFTCRECSDSAG---GIVLAVALAVAGIFAAVVVVSYVTSGKRNGRGQG-IVERVALYIPLQSVKIVVVAWQVVTQFTVVANITYPDVYQTFLDGLKLFNFDLGWILSAGCVTDVDFHDRLLMSTIGPIIAVMVLACTYAAATRIHRGATDTTLQNVWDKHVLVVLLLSFFVYSSVSSTLFRTFACETLGDGKNYLRADYRIECDSSRHKGFEVYAGIMMLVYTVGIPGLYGFLLYRDRD 1256
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 242 bits (618), Expect = 9.600e-70 Identity = 121/250 (48.40%), Postives = 169/250 (67.60%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCSSGE--GVAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIAR-VFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C+IC+G Y + + F CTKCS + G+ V +Y++S + +GG GGL+ R+ + +SVKIV+V WQILTQF+ VANVTYP +YQ FLD +DV NFD+ WV S GC+ D DFHD LL +TI P++ + L+ T AA + NRGS + + V++KHVS LL+TFLVYS+VSS +F+ F C+ L DG +YLR+DY I+C S+ H+A Q++A FM++LYPVGIP Y LL++ R+
Sbjct: 816 CSICSGGYTKQLGFSCTKCSENKAGGIVVXXXXXXXXXXXXXXXXSYIMSRDDDGGAEGGLVERMARHIPLQSVKIVIVSWQILTQFTSVANVTYPDVYQDFLDAMDVFNFDLSWVFSTGCIFDIDFHDRLLVSTISPLVALSFLACTNAAVARTNRGSPQNLQNNVWQKHVSMGLLLTFLVYSNVSSVLFQSFACEELHDGKNYLRSDYRIECDSSGHKAFQVYAGFMIVLYPVGIPALYAGLLFRDRD 1065
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 240 bits (612), Expect = 2.730e-69 Identity = 125/248 (50.40%), Postives = 169/248 (68.15%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCSSGEG-VAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C +C+G Y + C+KCS G +A+GV A + A V+Y VS E EG G ++ R V +SVKIV+V WQILTQF+ VAN+ +PH+YQRFLD +++ NFD+GWV+SAGCV D DFHD LL +TI PI+ + L+A YAAA+ + S E + RV+ KHVS VLL+TFLVY+SVS+ +F+ F C+ L D +YLRADY I+C S KH A Q++A FM++LY VGIP YG L++ +
Sbjct: 566 CAVCSGGYTARLGMACSKCSDRAGSIALGVSVSVAGLLFTVALVSYAVSGESEGRARG-VVERTGRFVPLQSVKIVIVAWQILTQFTSVANIRFPHVYQRFLDALELFNFDLGWVLSAGCVFDVDFHDRLLVSTIAPIVGLLFLAAVYAAAARNSHRSSEDLQRVWHKHVSLVLLLTFLVYASVSAVLFQTFACEELDDRKNYLRADYRIECDSPKHSAFQVYAGFMIVLYTVGIPALYGGFLFRDSD 812
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 236 bits (603), Expect = 4.890e-68 Identity = 126/253 (49.80%), Postives = 167/253 (66.01%), Query Frame = 1
Query: 31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAGAAFVAYLVS------NEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
C IC+ Y + F C+KC + G G++ +ALAV G V +VS + G G +K + +++KI+VV WQI+TQF+ ANVTYP +YQRFL+ +DV NFD+ WV+SAGCV+D DFHD LL +TIGPI+ + L+ATY A S NRG+ + V+ +HVS VLL+ FLVYS VSS VF+ F CD L G YLRADY I+C S+KHQ +++A FM+LLYPVGIP FYG LL + R+
Sbjct: 606 CAICSDDYSAQLGFTCSKCPNRAG---GILLATALAVIGLFTVVAVVSYVAWRVDPNTGCAMAG---HLKRYLPLQTLKILVVAWQIVTQFTSAANVTYPDVYQRFLNGLDVFNFDISWVLSAGCVMDLDFHDRLLLSTIGPIMALLFLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFLVYSGVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLLRDRD 852 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19995.6504.1 >prot_Ecto-sp13_S_contig19995.6504.1 ID=prot_Ecto-sp13_S_contig19995.6504.1|Name=mRNA_Ecto-sp13_S_contig19995.6504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp MPSSFALNTDCTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAGAback to top mRNA from alignment at Ecto-sp13_S_contig19995:755..1941+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19995.6504.1 ID=mRNA_Ecto-sp13_S_contig19995.6504.1|Name=mRNA_Ecto-sp13_S_contig19995.6504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19995:755..1941+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19995:755..1941+ >mRNA_Ecto-sp13_S_contig19995.6504.1 ID=mRNA_Ecto-sp13_S_contig19995.6504.1|Name=mRNA_Ecto-sp13_S_contig19995.6504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19995:755..1941+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |