mRNA_Ecto-sp13_S_contig19995.6504.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19995.6504.1
Unique NamemRNA_Ecto-sp13_S_contig19995.6504.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7FRV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV1_ECTSI)

HSP 1 Score: 441 bits (1134), Expect = 7.790e-145
Identity = 231/247 (93.52%), Postives = 235/247 (95.14%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C ICT +YGRTMAFECTKCSSGEGVAVGVIFVSALAV GAA VAYLVSNEREG  X  LIV VKDKVSFRS+KIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFD+GWVISAGCVVDFDFHDHLLTATIGPIIVVGVL ATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLAD NSYLRADYSIQCSSTKH+ALQIFAVFMVLLYPVGIPLFYGILLY TRE
Sbjct:  633 CAICTENYGRTMAFECTKCSSGEGVAVGVIFVSALAVGGAALVAYLVSNEREGXXXXXLIVLVKDKVSFRSLKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDIGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLGATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADSNSYLRADYSIQCSSTKHRALQIFAVFMVLLYPVGIPLFYGILLYNTRE 879          
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 6.370e-76
Identity = 135/249 (54.22%), Postives = 179/249 (71.89%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAGAAFVA--YLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C++C+  Y  ++AF CT+C    G  + ++ V  + V GAA     +LVS E EG    G+I RV  ++  +S+KIVVVVWQILTQFS VANVTYP +YQRFLD +++LNFDV W+ SAGC+V+ DFH  LL ATIGP++ + +L+ TY  A  R+ GS+ A+ ++  KH+S VLL+TFLVYSSVS+TVF+ F C+ L D   YLRADY I+C S++HQA Q+FA  M+L+YPVGIPLFYG LLYK R 
Sbjct: 1364 CSVCSEGYSMSLAFTCTECVDDHG-GIAIMVVVGVFVLGAAIALCMHLVSGEMEGA-RRGVIHRVVKRLPLQSIKIVVVVWQILTQFSSVANVTYPDVYQRFLDGVNILNFDVLWIPSAGCLVEVDFHGRLLVATIGPLVALALLAITYTVAKRRSSGSEAALQKIRHKHMSMVLLITFLVYSSVSATVFQSFACEDLDDHKKYLRADYRIECDSSEHQAFQVFAGIMILVYPVGIPLFYGYLLYKHRR 1610          
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 2.710e-72
Identity = 124/248 (50.00%), Postives = 172/248 (69.35%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCSSGEG-VAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C +C+  Y   +AF CT+CS G G +A+  +    +     A  +Y +S  R G    G++ R+   +  +SVKIV+V WQILTQF+ VANVTYP +Y+RFLD +DV NFD+ WV+SAGC+ D DFHD LL +T+ P+I +  L+ TYAAA   NRG  E++  ++ KHVS VLL+TFL+YSSVS+T+F+ FVC+ L DG +YLRADY+I C S+KH+A Q++A FMV++Y VGIP  Y  LL++ R 
Sbjct:  845 CAVCSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSG-RVGDVRSGVVARLGQYIPLQSVKIVIVAWQILTQFTSVANVTYPDVYKRFLDGLDVFNFDLSWVLSAGCIFDIDFHDRLLASTVSPVIGLLFLAGTYAAAVSMNRGKAESLQVIWNKHVSLVLLLTFLIYSSVSATLFKAFVCEELEDGTNYLRADYTIDCDSSKHKAFQVYAGFMVVVYVVGIPALYAFLLFRDRH 1091          
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 9.150e-72
Identity = 132/251 (52.59%), Postives = 170/251 (67.73%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAG----AAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C IC+  Y   M+F C  CS   G   G+   +ALAV G     A V+Y+ S ER G G G ++ RV   +  +SVKIVVV WQI+TQF++VANVTYPH+YQ FL+ ++V NFD+ W++SAGCVVD DFHD LL ATIGPI    +L  TYAAA   +RG+ E +  V  KHV  VLL+TF VYSSVS+T+FR F C+ L DG +YL ADY I+C S+KH+  +++A FMVLLY  GIP  Y  LL++ R+
Sbjct: 1200 CAICSEGYSAQMSFTCRTCSDNAG---GIALAAALAVVGLVLLVAVVSYVSSGERNGKGRG-IVERVGRYIPLQSVKIVVVAWQIMTQFTNVANVTYPHVYQNFLNGLEVFNFDLSWMLSAGCVVDVDFHDRLLMATIGPIFAALLLVCTYAAAVRIHRGATETLENVRHKHVFMVLLLTFFVYSSVSATLFRTFACETLEDGKTYLLADYRIECDSSKHKRFEVYAGFMVLLYTAGIPALYSFLLFRDRD 1446          
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 4.200e-71
Identity = 125/249 (50.20%), Postives = 173/249 (69.48%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCS--SGEGVAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C IC+  Y   ++F C+KCS  S  G+AV V+    +     A V+Y+ S E   G  GG++  V   +  +S+KIV+V WQILTQF+ VANVTYP +YQ  LDV+DV NFD+ W++SAGCVVD +FH  LL +TI PI+ + +L+ TYAAA+  NRG  E +  ++ KHV+ VLL+TF VYSSVSST+FR F CD L     YLRADYSI+C+S++H+ +Q++A FM+++Y VGIP  Y  LL+K+R+
Sbjct: 1099 CGICSDGYTEQLSFACSKCSENSAGGIAVAVVLALLIVFLAVAVVSYVTSGEVGMGRKGGIVELVTRYIPLQSLKIVIVSWQILTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNFHGRLLVSTISPIVALLLLACTYAAAARINRGEPEKLNIIWNKHVTVVLLLTFFVYSSVSSTLFRAFACDDLDYSKDYLRADYSIECNSSEHRGIQVYAGFMIVIYTVGIPALYAELLFKSRD 1347          
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.110e-70
Identity = 131/251 (52.19%), Postives = 177/251 (70.52%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAG----AAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C+IC+  Y   ++F+C++CS   G   G+I  S LAV       A V+Y+VS+ + G G  G + R+   +  +S KIVVV WQILTQF+ VANVTYP +YQRFLD + V NFD+ WV+SAGC+V  DFHD LL +TIGPI+ +  L  TYAAA+  NRG+ E +  ++ +HVS VLL+T  VYSSVSST+F+ F C+ LADG +YLRADY I C S+KH+ALQ++A  MV++Y VGIP  YG+LL++ R+
Sbjct: 1656 CSICSDGYTAGLSFKCSECSDSAG---GIILASFLAVVALLVAVAVVSYVVSD-KVGEGSRGTVERLGRYIPLQSAKIVVVSWQILTQFTAVANVTYPDVYQRFLDGLGVFNFDLSWVLSAGCIVVVDFHDRLLISTIGPIVALLFLCWTYAAATRINRGATETLQVIWNRHVSMVLLLTVFVYSSVSSTLFQTFACESLADGETYLRADYRITCDSSKHKALQVYAGVMVVVYTVGIPALYGVLLFRDRD 1902          
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 6.260e-70
Identity = 127/252 (50.40%), Postives = 173/252 (68.65%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAG----AAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGS-DEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C +C+  +     F C +CS   G   G++   ALAVAG       V+Y+ S +R G G G ++ RV   +  +SVKIVVV WQ++TQF+ VAN+TYP +YQ FLD + + NFD+GW++SAGCV D DFHD LL +TIGPII V VL+ TYAAA+  +RG+ D  +  V+ KHV  VLL++F VYSSVSST+FR F C+ L DG +YLRADY I+C S++H+  +++A  M+L+Y VGIP  YG LLY+ R+
Sbjct: 1009 CAVCSHGFSAQFGFTCRECSDSAG---GIVLAVALAVAGIFAAVVVVSYVTSGKRNGRGQG-IVERVALYIPLQSVKIVVVAWQVVTQFTVVANITYPDVYQTFLDGLKLFNFDLGWILSAGCVTDVDFHDRLLMSTIGPIIAVMVLACTYAAATRIHRGATDTTLQNVWDKHVLVVLLLSFFVYSSVSSTLFRTFACETLGDGKNYLRADYRIECDSSRHKGFEVYAGIMMLVYTVGIPGLYGFLLYRDRD 1256          
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 9.600e-70
Identity = 121/250 (48.40%), Postives = 169/250 (67.60%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCSSGE--GVAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIAR-VFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C+IC+G Y + + F CTKCS  +  G+ V                +Y++S + +GG  GGL+ R+   +  +SVKIV+V WQILTQF+ VANVTYP +YQ FLD +DV NFD+ WV S GC+ D DFHD LL +TI P++ +  L+ T AA +  NRGS + +   V++KHVS  LL+TFLVYS+VSS +F+ F C+ L DG +YLR+DY I+C S+ H+A Q++A FM++LYPVGIP  Y  LL++ R+
Sbjct:  816 CSICSGGYTKQLGFSCTKCSENKAGGIVVXXXXXXXXXXXXXXXXSYIMSRDDDGGAEGGLVERMARHIPLQSVKIVIVSWQILTQFTSVANVTYPDVYQDFLDAMDVFNFDLSWVFSTGCIFDIDFHDRLLVSTISPLVALSFLACTNAAVARTNRGSPQNLQNNVWQKHVSMGLLLTFLVYSNVSSVLFQSFACEELHDGKNYLRSDYRIECDSSGHKAFQVYAGFMIVLYPVGIPALYAGLLFRDRD 1065          
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 2.730e-69
Identity = 125/248 (50.40%), Postives = 169/248 (68.15%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCSSGEG-VAVGVIFVSALAVAGAAFVAYLVSNEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C +C+G Y   +   C+KCS   G +A+GV    A  +   A V+Y VS E EG   G ++ R    V  +SVKIV+V WQILTQF+ VAN+ +PH+YQRFLD +++ NFD+GWV+SAGCV D DFHD LL +TI PI+ +  L+A YAAA+  +  S E + RV+ KHVS VLL+TFLVY+SVS+ +F+ F C+ L D  +YLRADY I+C S KH A Q++A FM++LY VGIP  YG  L++  +
Sbjct:  566 CAVCSGGYTARLGMACSKCSDRAGSIALGVSVSVAGLLFTVALVSYAVSGESEGRARG-VVERTGRFVPLQSVKIVIVAWQILTQFTSVANIRFPHVYQRFLDALELFNFDLGWVLSAGCVFDVDFHDRLLVSTIAPIVGLLFLAAVYAAAARNSHRSSEDLQRVWHKHVSLVLLLTFLVYASVSAVLFQTFACEELDDRKNYLRADYRIECDSPKHSAFQVYAGFMIVLYTVGIPALYGGFLFRDSD 812          
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 4.890e-68
Identity = 126/253 (49.80%), Postives = 167/253 (66.01%), Query Frame = 1
Query:   31 CTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAGAAFVAYLVS------NEREGGGXGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVANVTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVVGVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRMFVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGILLYKTRE 771
            C IC+  Y   + F C+KC +  G   G++  +ALAV G   V  +VS      +   G    G    +K  +  +++KI+VV WQI+TQF+  ANVTYP +YQRFL+ +DV NFD+ WV+SAGCV+D DFHD LL +TIGPI+ +  L+ATY A S  NRG+   +  V+ +HVS VLL+ FLVYS VSS VF+ F CD L  G  YLRADY I+C S+KHQ  +++A FM+LLYPVGIP FYG LL + R+
Sbjct:  606 CAICSDDYSAQLGFTCSKCPNRAG---GILLATALAVIGLFTVVAVVSYVAWRVDPNTGCAMAG---HLKRYLPLQTLKILVVAWQIVTQFTSAANVTYPDVYQRFLNGLDVFNFDISWVLSAGCVMDLDFHDRLLLSTIGPIMALLFLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFLVYSGVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLLRDRD 852          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19995.6504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRV1_ECTSI7.790e-14593.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JY65_9PHAE6.370e-7654.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G301_ECTSI2.710e-7250.00Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI9.150e-7252.59Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5K0E9_9PHAE4.200e-7150.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G5Y7_ECTSI1.110e-7052.19Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LIY0_ECTSI6.260e-7050.40Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FTL7_ECTSI9.600e-7048.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G2Z8_ECTSI2.730e-6950.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHH1_ECTSI4.890e-6849.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19995contigEcto-sp13_S_contig19995:755..1941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score442.2
Seed ortholog evalue1.7e-121
Seed eggNOG ortholog2880.D7FRV1
Model size771
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG OGs2BFIX@1,2S176@2759
Cds size771
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463005.2464569-CDS-Ecto-sp13_S_contig19995:754..10361681463005.2464569-CDS-Ecto-sp13_S_contig19995:754..1036Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19995 755..1036 +
1681463005.2683415-CDS-Ecto-sp13_S_contig19995:1452..19411681463005.2683415-CDS-Ecto-sp13_S_contig19995:1452..1941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19995 1453..1941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19995.6504.1prot_Ecto-sp13_S_contig19995.6504.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19995 755..1941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19995.6504.1

>prot_Ecto-sp13_S_contig19995.6504.1 ID=prot_Ecto-sp13_S_contig19995.6504.1|Name=mRNA_Ecto-sp13_S_contig19995.6504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
MPSSFALNTDCTICTGSYGRTMAFECTKCSSGEGVAVGVIFVSALAVAGA
AFVAYLVSNEREGGGGGGLIVRVKDKVSFRSVKIVVVVWQILTQFSDVAN
VTYPHIYQRFLDVIDVLNFDVGWVISAGCVVDFDFHDHLLTATIGPIIVV
GVLSATYAAASYRNRGSDEAIARVFRKHVSAVLLVTFLVYSSVSSTVFRM
FVCDPLADGNSYLRADYSIQCSSTKHQALQIFAVFMVLLYPVGIPLFYGI
LLYKTRE
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mRNA from alignment at Ecto-sp13_S_contig19995:755..1941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19995.6504.1 ID=mRNA_Ecto-sp13_S_contig19995.6504.1|Name=mRNA_Ecto-sp13_S_contig19995.6504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19995:755..1941+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTCTTCTTTCGCGTTGAACACAGACTGCACGATCTGCACGGGAAG CTACGGTCGAACCATGGCTTTTGAGTGCACCAAGTGCTCCTCTGGCGAAG GCGTCGCCGTCGGTGTAATTTTCGTTTCGGCTCTGGCAGTGGCGGGCGCC GCGTTCGTGGCGTACTTGGTGTCGAACGAGCGGGAGGGGGGCGGAGGCGG GGGCTTGATCGTCCGGGTGAAGGACAAGGTGTCTTTCCGGTCGGTCAAGA TCGTCGTCGTTGTCTGGCAGATTTTGACTCAGGTGAGGTTTTGCGAAGAA AGTGGGTGCTATTCGCCACTCGGGGTGGTGTGCCGGTGTGTTTAAAAAAA AAAAAAGACACCGCGATATTTACCGTCGGTGGCTCAAACCTTTGTGTACA CCCTGCGAACTGAGGCTGCTGATAGTCGGGGTTCGGGTCATCGGGGTTTT TCGACCAGCTGAACGATCGCATCTTCTCACCGCCACGGAGAAAGACAGCG GCCGCCGCGGCTTGTTCTCGAGCACAACAACCATTTGTTTCTTGATGAAA GGTGTCTTTCGAAAACGCCCGCCCTGTTCGAGCTTGATACCACCCCAAGC GCGTCGATAATCCTGGCGCCGTTTTTGCATCCGTAACTCCTCACCTCTCC ACCCGAACGCTTGCTCTTGGTTGCGCTGTGGTTGTTGTCTCAAAACAGTT CTCGGACGTGGCGAATGTCACCTACCCTCATATCTACCAGCGGTTTTTGG ATGTCATTGACGTGCTCAACTTCGACGTTGGGTGGGTGATTTCGGCCGGG TGCGTTGTCGACTTCGACTTCCACGATCATTTGCTGACGGCCACTATCGG GCCCATCATCGTGGTGGGTGTCCTGAGCGCGACCTACGCAGCAGCCTCGT ATCGGAATCGTGGTTCGGATGAAGCCATCGCCAGGGTCTTTCGCAAGCAC GTTTCGGCGGTGCTCCTGGTGACATTTCTCGTGTATTCATCGGTGTCGTC GACCGTATTTCGGATGTTCGTGTGCGACCCACTTGCGGACGGCAATTCTT ATCTTCGTGCGGACTACAGCATCCAGTGCAGCTCCACCAAGCACCAAGCT CTGCAGATCTTCGCTGTTTTCATGGTGCTTTTGTATCCCGTAGGTATCCC TCTGTTTTACGGCATCCTCCTCTATAAGACCCGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19995:755..1941+

>mRNA_Ecto-sp13_S_contig19995.6504.1 ID=mRNA_Ecto-sp13_S_contig19995.6504.1|Name=mRNA_Ecto-sp13_S_contig19995.6504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19995:755..1941+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTCTTCTTTCGCGTTGAACACAGACTGCACGATCTGCACGGGAAG
CTACGGTCGAACCATGGCTTTTGAGTGCACCAAGTGCTCCTCTGGCGAAG
GCGTCGCCGTCGGTGTAATTTTCGTTTCGGCTCTGGCAGTGGCGGGCGCC
GCGTTCGTGGCGTACTTGGTGTCGAACGAGCGGGAGGGGGGCGGAGGCGG
GGGCTTGATCGTCCGGGTGAAGGACAAGGTGTCTTTCCGGTCGGTCAAGA
TCGTCGTCGTTGTCTGGCAGATTTTGACTCAGTTCTCGGACGTGGCGAAT
GTCACCTACCCTCATATCTACCAGCGGTTTTTGGATGTCATTGACGTGCT
CAACTTCGACGTTGGGTGGGTGATTTCGGCCGGGTGCGTTGTCGACTTCG
ACTTCCACGATCATTTGCTGACGGCCACTATCGGGCCCATCATCGTGGTG
GGTGTCCTGAGCGCGACCTACGCAGCAGCCTCGTATCGGAATCGTGGTTC
GGATGAAGCCATCGCCAGGGTCTTTCGCAAGCACGTTTCGGCGGTGCTCC
TGGTGACATTTCTCGTGTATTCATCGGTGTCGTCGACCGTATTTCGGATG
TTCGTGTGCGACCCACTTGCGGACGGCAATTCTTATCTTCGTGCGGACTA
CAGCATCCAGTGCAGCTCCACCAAGCACCAAGCTCTGCAGATCTTCGCTG
TTTTCATGGTGCTTTTGTATCCCGTAGGTATCCCTCTGTTTTACGGCATC
CTCCTCTATAAGACCCGCGAG
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